Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Reverse (-)

18859392 .. 18865086

Gene Structure 5695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGGCGGTCGAAGTTCACAAGTTCGCTCAGTGCATCACTTGTCATGCTTGGAGCCGTGATCGCTCCATGCTGGCATTTTGTCCGAACAACAATGAAGTTCACATCTATGCTCTGTTGCAAGGCAAGTGGGAGAAGCTACATGTTCTTCAGAAGCATGACCAAATTGTATCTGGGATAGACTGGAGCGCAAGGTCGAACAAAATAGTTACTGCATCTCATGATCGGAATTCCTATGTCTGGAATCTTGAAGGATCAGAGTGGGTACCAACCCTTGTTATCCTTCGGCTAAATCGTGCTGCACTCTGTGTTCGGTGGAGTCCAAGAGAAAACAAATTTGCTGTTGGAAGTGGGGCAAAAATTGTTTGTATATGCTACTACGAGCAAGAGAACAACTGGTGGGTCAGTAAACTTATCAGAAAAAGACATGACTCTTCTGTGACAAGTGTTGCTTGGCATCCAAATAATATTCTTCTTGCAACTGCATCTACAGATGGAAAGTGCCGAATATTTTCCACCTTTATTAAGGTCGTTGACGCAAAGGAATCAAGAACAGGCCCATCTGCAGATTCAAAATTTGGAGAGCAAATTCTTCAACTTGATCTCTCCTTTACTTGGTCATTTGGTGTTAGGTGGTCACCAAGTGGCAATACCTTAGCATATGTAGGCCATAATTCTATGATTTACTTTGTTGATGATGTGGGACCTTCTCCTTTGGCTCAAAATGTTGCATTCCGTGATTTGCCTCTCCGTGATGTCTTATTTCTTTCTGAAAGATTAGTTATAGGTGTGGGATTTGATTGCAACCCAATGGTTTTTGCGGCAGATGAAAGAGGAATATGGAGTTTTATCAAATTTCTGGGGGAAAGAAAGACAACATCTTCAGGTCCAAAATATGGTTCACAGTTTTCTGAAGCATTTGGAAAGCTATATGGCCAACCAAAACAGGGATTCAACAATGATACAAATGAGCATTCAAGGTCACGAGGAGGGGTCCATGAGAACTGCATTAATTGTATCGTGCCGCTTGGAGATCCAGGGAGTTCTAAAGTGAAACGCTTCAGCACATCGGGATTGGATGGAAAAATTGTTGTCTGGGATATGGAGAACCAAGAAGATTTAGCGGAGTACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

379

Amino Acids

42.53

Weight (kDa)

8.27

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	896
AciI	CCGC	5 cut(s)	5, 8, 821, 1025, 1124
AclWI	GGATC	2 cut(s)	262, 1028
AcoI	YGGCCR	1 cut(s)	934
AcsI	RAATTY	5 cut(s)	229, 335, 575, 588, 854
AcuI	CTGAAG	4 cut(s)	134, 867, 933, 1045
AdeI	CACNNNGTG	2 cut(s)	308, 644
AfaI	GTAC	2 cut(s)	267, 1130
AfiI	CCNNNNNNNGG	4 cut(s)	240, 615, 896, 947
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	251, 573, 596, 955, 978
AjnI	CCWGG	1 cut(s)	1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AluBI	AGCT	2 cut(s)	139, 928
AluI	AGCT	2 cut(s)	139, 928
AlwI	GGATC	2 cut(s)	262, 1028
AoxI	GGCC	3 cut(s)	556, 667, 934
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	5 cut(s)	229, 335, 575, 588, 854
AseI	ATTAAT	1 cut(s)	1011
Asp700I	GAANNNNTTC	2 cut(s)	511, 1058
Asp718I	GGTACC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	4 cut(s)	557, 704, 887, 994
AsuHPI	GGTGA	1 cut(s)	630
AvaII	GGWCC	3 cut(s)	704, 887, 994
BalI	TGGCCA	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	265
BauI	CACGAG	1 cut(s)	984
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	488, 568, 1073
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	1038
BfmI	CTRYAG	2 cut(s)	489, 564
BisI	GCNGC	4 cut(s)	6, 300, 822, 1025
BlsI	GCNGC	4 cut(s)	7, 301, 823, 1026
BmcAI	AGTACT	1 cut(s)	1130
Bme1390I	CCNGG	1 cut(s)	1038
Bme18I	GGWCC	3 cut(s)	704, 887, 994
BmgT120I	GGNCC	4 cut(s)	557, 704, 887, 994
BmiI	GGNNCC	4 cut(s)	56, 267, 705, 995
BmrFI	CCNGG	1 cut(s)	1038
BmsI	GCATC	4 cut(s)	45, 224, 466, 494
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	1037
BsaXI	ACNNNNNCTCC	1 cut(s)	1118
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 615, 896, 947
Bse1I	ACTGG	2 cut(s)	188, 401
BseBI	CCWGG	1 cut(s)	1038
BseDI	CCNNGG	1 cut(s)	1037
BseGI	GGATG	2 cut(s)	457, 1084
BseLI	CCNNNNNNNGG	4 cut(s)	240, 615, 896, 947
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	188, 401
BseRI	GAGGAG	1 cut(s)	1002
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	558, 669, 936
BshNI	GGYRCC	1 cut(s)	265
BsiEI	CGRYCG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	4 cut(s)	240, 615, 896, 947
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	2 cut(s)	731, 973
BsnI	GGCC	3 cut(s)	558, 669, 936
Bsp143I	GATC	5 cut(s)	61, 223, 254, 601, 1033
BspACI	CCGC	5 cut(s)	5, 8, 821, 1025, 1124
BspANI	GGCC	3 cut(s)	558, 669, 936
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	56, 267, 705, 995
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	2 cut(s)	262, 1028
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	188, 401
BssECI	CCNNGG	1 cut(s)	1037
BssMI	GATC	5 cut(s)	61, 223, 254, 601, 1033
BssSI	CACGAG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	1038
Bst4CI	ACNGT	1 cut(s)	906
Bst6I	CTCTTC	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	30, 655
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	457, 1084
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	5 cut(s)	64, 226, 257, 604, 1036
BstMBI	GATC	5 cut(s)	61, 223, 254, 601, 1033
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	1038
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	1036
BstSFI	CTRYAG	2 cut(s)	489, 564
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	1033
BstYI	RGATCY	1 cut(s)	1033
BsuRI	GGCC	3 cut(s)	558, 669, 936
BtsCI	GGATG	2 cut(s)	457, 1084
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	4 cut(s)	557, 704, 887, 994
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	266, 1129
CspCI	CAANNNNNGTGG	2 cut(s)	110, 145
CviAII	CATG	7 cut(s)	47, 70, 143, 158, 221, 428, 998
CviJI	RGCY	8 cut(s)	57, 139, 289, 558, 669, 719, 928, 936
CviKI_1	RGCY	8 cut(s)	57, 139, 289, 558, 669, 719, 928, 936
CviQI	GTAC	2 cut(s)	266, 1129
DdeI	CTNAG	2 cut(s)	30, 655
DpnI	GATC	5 cut(s)	63, 225, 256, 603, 1035
DpnII	GATC	5 cut(s)	61, 223, 254, 601, 1033
DraIII	CACNNNGTG	2 cut(s)	308, 644
EaeI	YGGCCR	1 cut(s)	934
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco47I	GGWCC	3 cut(s)	704, 887, 994
Eco57I	CTGAAG	4 cut(s)	134, 867, 933, 1045
Eco91I	GGTNACC	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	1036
FaeI	CATG	7 cut(s)	50, 73, 146, 161, 224, 431, 1001
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	7 cut(s)	46, 69, 142, 157, 220, 427, 997
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	6, 300, 822, 1025
FokI	GGATG	2 cut(s)	444, 1091
Fsp4HI	GCNGC	4 cut(s)	6, 300, 822, 1025
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	6, 300, 822, 1025
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	558, 669, 936
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	7 cut(s)	50, 73, 146, 161, 224, 431, 1001
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	6 cut(s)	244, 319, 431, 545, 569, 951
HphI	GGTGA	1 cut(s)	630
Hpy166II	GTNNAC	5 cut(s)	19, 103, 410, 535, 902
Hpy188I	TCNGA	7 cut(s)	87, 153, 228, 259, 419, 772, 913
Hpy188III	TCNNGA	6 cut(s)	221, 241, 248, 549, 984, 1071
Hpy8I	GTNNAC	5 cut(s)	19, 103, 410, 535, 902
HpyAV	CCTTC	3 cut(s)	245, 293, 717
HpyCH4III	ACNGT	1 cut(s)	906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	2 cut(s)	30, 655
Hsp92II	CATG	7 cut(s)	50, 73, 146, 161, 224, 431, 1001
HspAI	GCGC	1 cut(s)	189
KpnI	GGTACC	1 cut(s)	269
Kzo9I	GATC	5 cut(s)	61, 223, 254, 601, 1033
LmnI	GCTCC	3 cut(s)	54, 71, 186
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	4 cut(s)	45, 224, 466, 494
MaeIII	GTNAC	4 cut(s)	208, 439, 636, 981
MalI	GATC	5 cut(s)	63, 225, 256, 603, 1035
MboI	GATC	5 cut(s)	61, 223, 254, 601, 1033
MboII	GAAGA	6 cut(s)	140, 426, 464, 584, 873, 1127
MflI	RGATCY	1 cut(s)	1033
MlsI	TGGCCA	1 cut(s)	936
MluNI	TGGCCA	1 cut(s)	936
MlyI	GAGTC	2 cut(s)	328, 425
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	756, 827, 980, 983
Mox20I	TGGCCA	1 cut(s)	936
MroXI	GAANNNNTTC	2 cut(s)	511, 1058
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	2 cut(s)	525, 1011
MslI	CAYNNNNRTG	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	936
MspR9I	CCNGG	1 cut(s)	1038
Mva1269I	GAATGC	2 cut(s)	731, 973
MvaI	CCWGG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	5 cut(s)	61, 223, 254, 601, 1033
NlaIII	CATG	7 cut(s)	50, 73, 146, 161, 224, 431, 1001
NlaIV	GGNNCC	4 cut(s)	56, 267, 705, 995
NmuCI	GTSAC	3 cut(s)	439, 636, 981
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PctI	GAATGC	2 cut(s)	731, 973
PdmI	GAANNNNTTC	2 cut(s)	511, 1058
PfeI	GAWTC	4 cut(s)	244, 545, 569, 951
PflMI	CCANNNNNTGG	1 cut(s)	896
PkrI	GCNGC	4 cut(s)	7, 301, 823, 1026
PleI	GAGTC	2 cut(s)	327, 425
PpsI	GAGTC	2 cut(s)	327, 425
PpuMI	RGGWCCY	1 cut(s)	704
PscI	ACATGT	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	1011
Psp5II	RGGWCCY	1 cut(s)	704
Psp6I	CCWGG	1 cut(s)	1036
PspEI	GGTNACC	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	1036
PspN4I	GGNNCC	4 cut(s)	56, 267, 705, 995
PspPI	GGNCC	4 cut(s)	557, 704, 887, 994
PspPPI	RGGWCCY	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	1033
RsaI	GTAC	2 cut(s)	267, 1130
RsaNI	GTAC	2 cut(s)	266, 1129
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	525, 1011
SatI	GCNGC	4 cut(s)	6, 300, 822, 1025
Sau3AI	GATC	5 cut(s)	61, 223, 254, 601, 1033
Sau96I	GGNCC	4 cut(s)	557, 704, 887, 994
ScaI	AGTACT	1 cut(s)	1130
SchI	GAGTC	2 cut(s)	328, 425
ScrFI	CCNGG	1 cut(s)	1038
SfaNI	GCATC	4 cut(s)	45, 224, 466, 494
SfcI	CTRYAG	2 cut(s)	489, 564
SinI	GGWCC	3 cut(s)	704, 887, 994
SmiMI	CAYNNNNRTG	1 cut(s)	108
SsiI	CCGC	5 cut(s)	5, 8, 821, 1025, 1124
SspI	AATATT	2 cut(s)	469, 510
StyD4I	CCNGG	1 cut(s)	1036
TaaI	ACNGT	1 cut(s)	906
TaqI	TCGA	2 cut(s)	12, 197
TatI	WGTACW	1 cut(s)	1128
TauI	GCSGC	3 cut(s)	8, 824, 1027
TfiI	GAWTC	4 cut(s)	244, 545, 569, 951
Tru1I	TTAA	2 cut(s)	525, 1011
Tru9I	TTAA	2 cut(s)	525, 1011
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	3 cut(s)	439, 636, 981
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	3 cut(s)	439, 636, 981
TspDTI	ATGAA	2 cut(s)	111, 843
TspGWI	ACGGA	2 cut(s)	725, 740
TspRI	CASTG	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	896
VpaK11BI	GGWCC	3 cut(s)	704, 887, 994
VspI	ATTAAT	1 cut(s)	1011
XapI	RAATTY	5 cut(s)	229, 335, 575, 588, 854
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmnI	GAANNNNTTC	2 cut(s)	511, 1058
ZrmI	AGTACT	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.