Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8083376.1

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 336

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8083376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 164 bp

atggccgcggtcgaagtgcaccgttttgctcagtgcatcacttgccatgcttggagccctgatcgctcaatgctggcattttgtccaaataacaatgaggttcacatctatactctgatgcaatccaaatgggaaaagctgcatgttcttcagaaggtaccgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

54

Amino Acids

6.31

Weight (kDa)

7.79

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	6, 8
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	159
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	6, 140
BlsI	GCNGC	2 cut(s)	7, 141
BmiI	GGNNCC	2 cut(s)	56, 159
BmsI	GCATC	2 cut(s)	45, 108
BsaJI	CCNNGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	21, 59
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	6, 8
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	56, 159
BspT107I	GGYRCC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	23, 162
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 63
BstNSI	RCATGY	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	75
Cfr42I	CCGCGG	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	47, 143
CviJI	RGCY	3 cut(s)	5, 57, 139
CviKI_1	RGCY	3 cut(s)	5, 57, 139
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	2 cut(s)	50, 146
FaiI	YATR	3 cut(s)	48, 111, 144
FatI	CATG	2 cut(s)	46, 142
Fnu4HI	GCNGC	2 cut(s)	6, 140
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	6, 140
GluI	GCNGC	2 cut(s)	6, 140
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	50, 146
Hpy166II	GTNNAC	2 cut(s)	19, 103
Hpy188I	TCNGA	2 cut(s)	117, 153
Hpy8I	GTNNAC	2 cut(s)	19, 103
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	23, 162
HpyCH4V	TGCA	4 cut(s)	19, 36, 121, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 63
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	50, 146
KpnI	GGTACC	1 cut(s)	161
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	2 cut(s)	59, 72
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	2 cut(s)	45, 108
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	21, 59
MnlI	CCTC	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	42, 63
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	50, 146
NlaIV	GGNNCC	2 cut(s)	56, 159
NspI	RCATGY	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	7, 141
PspN4I	GGNNCC	2 cut(s)	56, 159
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SacII	CCGCGG	1 cut(s)	9
SatI	GCNGC	2 cut(s)	6, 140
Sau3AI	GATC	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	21, 59
SetI	ASST	3 cut(s)	102, 141, 159
SfaNI	GCATC	2 cut(s)	45, 108
Sfr303I	CCGCGG	1 cut(s)	9
SgeI	CNNG	7 cut(s)	19, 54, 59, 63, 71, 86, 155
SgrBI	CCGCGG	1 cut(s)	9
SsiI	CCGC	2 cut(s)	6, 8
TaaI	ACNGT	2 cut(s)	23, 162
TaqI	TCGA	1 cut(s)	12
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	139
TspRI	CASTG	1 cut(s)	38
VneI	GTGCAC	1 cut(s)	17
XceI	RCATGY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.