Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Reverse (-)

12921651 .. 12926733

Gene Structure 5083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1143300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGGCGGTGGAAGTTCACAAGTTCGCTCAATGCATTACTTGCCATGCTTGGAGCCGTGATCGCTCCATGCTGGCATTTTGTCCGAACAACAATGAAGTTCACATCTATGCTCTGTTGCAAGGCAAGTGGGAGAAGCTGCATGTTCTTCAGAAGCATGACCAAATTGTATCTGGGATAGATTGGAGCGCAAGGTCAAACAAAATAGTTACTGCATCTCATGATCGGAATTCCTATGTCTGGAATCTAGAAGGGTCTGAGTGGGTACCAACCCTTGTTATCCTTCGGCTAAATCGCGCTGCACTTTGTGTTAAGTGGAGTCCAAGAGAAAATAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGTATATGCTACTATGAGCAAGAAAATAACTGGTGGGTCAGTAAACTTATCAGAAAAAGGCATGACTCTTCTGTGACAAGTGTTGCGTGGCATCCCAATAATATTCTTCTTGCAACAGCATCTACAGATGGAAAATGCCGTATATTTTCCACTTTTATTAAGGTCGTCGACGCAAAGGAATCAAGAACAGGCCCATTTGCTGATTCAAAATTTGGAGAGCAAATTCTTCAGCTTGATCTCTCATTTTCCTGGTCATTTGGCGTGAGGTGGTCACCGAGTGGCAGTACCTTAGCATATGTAGGCCATAATTCTATGATTTACTTCGTTGATGATGTGGGACCTTCTCCTTTGGCTCAGAATGTTGCATTCCGTGATTTGCCTCTCCGTGATGTGTTATTTCTTTCTGAAAGATTACTTATAGGTGTGGGATTTGATTGCAATCCAATGGTTTTTGCGGCAGATTTACATGGAATATGGCATTTTATCAAATTTCTTGGGGAAAGAAAGACAACATCTTCAGGTCCAAAATATGGTTCACAGTTTTCTGAAGCATTTGGAAAGCTATATGGCCAACAGAAACATGGATTGAACAATGATACAAATGAACATTCAAGATCACGAGGAGGCGTCCATGAGAACTGCATTAATTGTATCGTGCCACTTGGAGAACCAGGGAGTTCTAAAGTAACGCGCTTCAGCACATCAGGATTGGATGGAAAAGTTGTTGTGTGGGATATGGAGAACCAAGCAGATTTATCGGAGTATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

379

Amino Acids

42.48

Weight (kDa)

8.27

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	4 - 83	7.9e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	6 - 86	9.8e-07	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	8 - 173	1.4e-13	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	9 - 173	2.3e-20	WDR5 beta-propeller domain
Beta-prop_RIG_2nd	PF23775	9 - 117	4.6e-07	RIG second beta-propeller
Beta-prop_WDR3_1st	PF25173	10 - 86	1.5e-06	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	65 - 170	8.7e-09	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	66 - 174	4.8e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	79 - 172	5.5e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	90 - 174	8e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	100 - 232	1.6e-10	THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	104 - 181	4.1e-06	CAF1B/HIR1 beta-propeller domain
ANAPC4_WD40	PF12894	104 - 172	3.6e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40	PF00400	141 - 171	1.2e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	896
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	2 cut(s)	297, 1057
AciI	CCGC	3 cut(s)	5, 8, 821
AcoI	YGGCCR	1 cut(s)	934
AcsI	RAATTY	4 cut(s)	229, 575, 588, 854
AcuI	CTGAAG	5 cut(s)	134, 578, 867, 933, 1045
AcyI	GRCGYC	1 cut(s)	993
AdeI	CACNNNGTG	2 cut(s)	308, 644
AfaI	GTAC	2 cut(s)	267, 652
AfiI	CCNNNNNNNGG	2 cut(s)	240, 896
AgsI	TTSAA	3 cut(s)	573, 955, 978
AjnI	CCWGG	2 cut(s)	614, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AluBI	AGCT	3 cut(s)	139, 598, 928
AluI	AGCT	3 cut(s)	139, 598, 928
AoxI	GGCC	3 cut(s)	556, 667, 934
ApeKI	GCWGC	2 cut(s)	139, 299
ApoI	RAATTY	4 cut(s)	229, 575, 588, 854
AseI	ATTAAT	1 cut(s)	1011
Asp718I	GGTACC	1 cut(s)	265
AspLEI	GCGC	3 cut(s)	191, 299, 1059
AspS9I	GGNCC	3 cut(s)	557, 704, 887
AsuHPI	GGTGA	1 cut(s)	630
AvaII	GGWCC	2 cut(s)	704, 887
BalI	TGGCCA	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	265
BauI	CACGAG	1 cut(s)	984
BbvI	GCAGC	2 cut(s)	126, 286
BccI	CCATC	2 cut(s)	488, 1073
BceAI	ACGGC	2 cut(s)	42, 489
BcgI	CGANNNNNNTGC	1 cut(s)	1104
BciT130I	CCWGG	2 cut(s)	616, 1038
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	4 cut(s)	6, 140, 300, 822
BlsI	GCNGC	4 cut(s)	7, 141, 301, 823
Bme1390I	CCNGG	2 cut(s)	616, 1038
Bme18I	GGWCC	2 cut(s)	704, 887
BmgT120I	GGNCC	3 cut(s)	557, 704, 887
BmiI	GGNNCC	3 cut(s)	56, 267, 705
BmrFI	CCNGG	2 cut(s)	616, 1038
BmsI	GCATC	3 cut(s)	224, 466, 494
Bpu10I	CCTNAGC	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	804
BsaHI	GRCGYC	1 cut(s)	993
BsaJI	CCNNGG	1 cut(s)	1037
BsaXI	ACNNNNNCTCC	1 cut(s)	1118
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 896
Bse1I	ACTGG	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	616, 1038
BseDI	CCNNGG	1 cut(s)	1037
BseGI	GGATG	2 cut(s)	457, 1084
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	2 cut(s)	240, 896
BseMII	CTCAG	2 cut(s)	249, 734
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	1002
BseXI	GCAGC	2 cut(s)	126, 286
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	2 cut(s)	297, 1057
BshFI	GGCC	3 cut(s)	558, 669, 936
BshNI	GGYRCC	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	2 cut(s)	240, 896
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	3 cut(s)	558, 669, 936
Bsp143I	GATC	4 cut(s)	61, 223, 601, 980
BspACI	CCGC	3 cut(s)	5, 8, 821
BspANI	GGCC	3 cut(s)	558, 669, 936
BspCNI	CTCAG	2 cut(s)	250, 733
BspFNI	CGCG	2 cut(s)	297, 1057
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	56, 267, 705
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	1037
BssMI	GATC	4 cut(s)	61, 223, 601, 980
BssNI	GRCGYC	1 cut(s)	993
BssSI	CACGAG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	2 cut(s)	616, 1038
Bst4CI	ACNGT	2 cut(s)	364, 906
Bst6I	CTCTTC	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	993
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	258, 655, 720
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	457, 1084
BstFNI	CGCG	2 cut(s)	297, 1057
BstHHI	GCGC	3 cut(s)	191, 299, 1059
BstKTI	GATC	4 cut(s)	64, 226, 604, 983
BstMBI	GATC	4 cut(s)	61, 223, 601, 980
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 63
BstNI	CCWGG	2 cut(s)	616, 1038
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	2 cut(s)	614, 1036
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	2 cut(s)	297, 1057
BstV1I	GCAGC	2 cut(s)	126, 286
BsuRI	GGCC	3 cut(s)	558, 669, 936
BtsCI	GGATG	2 cut(s)	457, 1084
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	3 cut(s)	191, 299, 1059
Cfr13I	GGNCC	3 cut(s)	557, 704, 887
CseI	GACGC	2 cut(s)	545, 982
Csp6I	GTAC	2 cut(s)	266, 651
CspCI	CAANNNNNGTGG	2 cut(s)	110, 145
CviAII	CATG	9 cut(s)	47, 70, 143, 158, 221, 428, 833, 947, 998
CviJI	RGCY	9 cut(s)	57, 139, 289, 558, 598, 669, 719, 928, 936
CviKI_1	RGCY	9 cut(s)	57, 139, 289, 558, 598, 669, 719, 928, 936
CviQI	GTAC	2 cut(s)	266, 651
DdeI	CTNAG	3 cut(s)	258, 655, 720
DpnI	GATC	4 cut(s)	63, 225, 603, 982
DpnII	GATC	4 cut(s)	61, 223, 601, 980
DraIII	CACNNNGTG	2 cut(s)	308, 644
EaeI	YGGCCR	1 cut(s)	934
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	704, 887
Eco57I	CTGAAG	5 cut(s)	134, 578, 867, 933, 1045
Eco91I	GGTNACC	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	614, 1036
EcoT22I	ATGCAT	1 cut(s)	38
FaeI	CATG	9 cut(s)	50, 73, 146, 161, 224, 431, 836, 950, 1001
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	9 cut(s)	46, 69, 142, 157, 220, 427, 832, 946, 997
FauNDI	CATATG	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	6, 140, 300, 822
FokI	GGATG	2 cut(s)	444, 1091
Fsp4HI	GCNGC	4 cut(s)	6, 140, 300, 822
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	3 cut(s)	190, 298, 1058
GluI	GCNGC	4 cut(s)	6, 140, 300, 822
HaeIII	GGCC	3 cut(s)	558, 669, 936
HgaI	GACGC	2 cut(s)	545, 982
HhaI	GCGC	3 cut(s)	191, 299, 1059
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	9 cut(s)	50, 73, 146, 161, 224, 431, 836, 950, 1001
Hin6I	GCGC	3 cut(s)	189, 297, 1057
HinP1I	GCGC	3 cut(s)	189, 297, 1057
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	5 cut(s)	244, 319, 431, 545, 569
HphI	GGTGA	1 cut(s)	630
Hpy166II	GTNNAC	5 cut(s)	19, 103, 410, 535, 902
Hpy188I	TCNGA	9 cut(s)	87, 153, 228, 259, 419, 723, 772, 913, 1126
Hpy188III	TCNNGA	7 cut(s)	221, 241, 248, 549, 978, 984, 1071
Hpy8I	GTNNAC	5 cut(s)	19, 103, 410, 535, 902
Hpy99I	CGWCG	2 cut(s)	536, 539
HpyAV	CCTTC	3 cut(s)	245, 293, 717
HpyCH4III	ACNGT	2 cut(s)	364, 906
HpyCH4V	TGCA	9 cut(s)	36, 121, 142, 215, 302, 479, 731, 804, 1008
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 63
HpyF3I	CTNAG	3 cut(s)	258, 655, 720
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	9 cut(s)	50, 73, 146, 161, 224, 431, 836, 950, 1001
HspAI	GCGC	3 cut(s)	189, 297, 1057
KpnI	GGTACC	1 cut(s)	269
Kzo9I	GATC	4 cut(s)	61, 223, 601, 980
LmnI	GCTCC	3 cut(s)	54, 71, 186
Lsp1109I	GCAGC	2 cut(s)	126, 286
LweI	GCATC	3 cut(s)	224, 466, 494
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	4 cut(s)	208, 439, 636, 1051
MalI	GATC	4 cut(s)	63, 225, 603, 982
MboI	GATC	4 cut(s)	61, 223, 601, 980
MboII	GAAGA	5 cut(s)	140, 426, 464, 584, 873
MlsI	TGGCCA	1 cut(s)	936
MluCI	AATT	7 cut(s)	165, 229, 575, 588, 673, 854, 1012
MluNI	TGGCCA	1 cut(s)	936
MlyI	GAGTC	2 cut(s)	328, 425
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	624, 756, 980, 983
Mox20I	TGGCCA	1 cut(s)	936
Mph1103I	ATGCAT	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	3 cut(s)	312, 525, 1011
MslI	CAYNNNNRTG	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	936
MspR9I	CCNGG	2 cut(s)	616, 1038
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	2 cut(s)	616, 1038
MvnI	CGCG	2 cut(s)	297, 1057
MwoI	GCNNNNNNNGC	2 cut(s)	42, 63
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	4 cut(s)	61, 223, 601, 980
NlaIII	CATG	9 cut(s)	50, 73, 146, 161, 224, 431, 836, 950, 1001
NlaIV	GGNNCC	3 cut(s)	56, 267, 705
NmuCI	GTSAC	2 cut(s)	439, 636
NsiI	ATGCAT	1 cut(s)	38
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	3 cut(s)	244, 545, 569
PflMI	CCANNNNNTGG	1 cut(s)	896
PkrI	GCNGC	4 cut(s)	7, 141, 301, 823
PleI	GAGTC	2 cut(s)	327, 425
PpsI	GAGTC	2 cut(s)	327, 425
PpuMI	RGGWCCY	1 cut(s)	704
PshBI	ATTAAT	1 cut(s)	1011
Psp5II	RGGWCCY	1 cut(s)	704
Psp6I	CCWGG	2 cut(s)	614, 1036
PspEI	GGTNACC	1 cut(s)	636
PspGI	CCWGG	2 cut(s)	614, 1036
PspN4I	GGNNCC	3 cut(s)	56, 267, 705
PspPI	GGNCC	3 cut(s)	557, 704, 887
PspPPI	RGGWCCY	1 cut(s)	704
RsaI	GTAC	2 cut(s)	267, 652
RsaNI	GTAC	2 cut(s)	266, 651
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	312, 525, 1011
SatI	GCNGC	4 cut(s)	6, 140, 300, 822
Sau3AI	GATC	4 cut(s)	61, 223, 601, 980
Sau96I	GGNCC	3 cut(s)	557, 704, 887
SchI	GAGTC	2 cut(s)	328, 425
ScrFI	CCNGG	2 cut(s)	616, 1038
SfaNI	GCATC	3 cut(s)	224, 466, 494
SfcI	CTRYAG	1 cut(s)	489
SgrDI	CGTCGACG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	704, 887
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	7 cut(s)	165, 229, 575, 588, 673, 854, 1012
SsiI	CCGC	3 cut(s)	5, 8, 821
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	614, 1036
TaaI	ACNGT	2 cut(s)	364, 906
TaqI	TCGA	1 cut(s)	534
TasI	AATT	7 cut(s)	165, 229, 575, 588, 673, 854, 1012
TauI	GCSGC	2 cut(s)	8, 824
TfiI	GAWTC	3 cut(s)	244, 545, 569
Tru1I	TTAA	3 cut(s)	312, 525, 1011
Tru9I	TTAA	3 cut(s)	312, 525, 1011
TseFI	GTSAC	2 cut(s)	439, 636
TseI	GCWGC	2 cut(s)	139, 299
Tsp45I	GTSAC	2 cut(s)	439, 636
TspDTI	ATGAA	2 cut(s)	111, 984
TspGWI	ACGGA	2 cut(s)	725, 740
Van91I	CCANNNNNTGG	1 cut(s)	896
VpaK11BI	GGWCC	2 cut(s)	704, 887
VspI	ATTAAT	1 cut(s)	1011
XapI	RAATTY	4 cut(s)	229, 575, 588, 854
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	2 cut(s)	170, 944
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.