Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020041.1

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Forward (+)

5432 .. 7157

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020041.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggccgcggtcgaagtgcaccgttttgctcagtgcatcacttgccatgcttggagccctgatcgctcaatgctggcattttgcccaaataacaatgaggttcacatctatactctgatgcaatccaaatgggaaaagctgcatgttcttcagaagcatgaccaaattatttctgggatagactggagtgcaaggtcaaacaaaatagttacttcatctcatgatcggaattcttatgtctggaacctagaaggatcagagtgggtaccaacacttgttatccttcggctaaatcgtgctgcactttgtgttcagtggagtccaaaaggtattgaagcacttaagttttctgaatctgaaatgttttgcacctttccatttgtattaaactacccaattataactctgggcttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

138

Amino Acids

15.91

Weight (kDa)

7.0

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	401, 415
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	6, 8
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	267
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	335
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	139, 299
ApoI	RAATTY	1 cut(s)	229
Asp718I	GGTACC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	126, 286
BfaI	CTAG	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	6, 140, 300
BlsI	GCNGC	3 cut(s)	7, 141, 301
BmiI	GGNNCC	3 cut(s)	56, 245, 267
BmsI	GCATC	2 cut(s)	45, 108
BpmI	CTGGAG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	126, 286
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	265
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	21, 59
Bsp143I	GATC	3 cut(s)	61, 223, 254
BspACI	CCGC	2 cut(s)	6, 8
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	56, 245, 267
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	61, 223, 254
Bst4CI	ACNGT	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	64, 226, 257
BstMBI	GATC	3 cut(s)	61, 223, 254
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 63
BstNSI	RCATGY	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	126, 286
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	38, 320
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	220
Cfr42I	CCGCGG	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	4 cut(s)	47, 143, 158, 221
CviJI	RGCY	5 cut(s)	5, 57, 139, 289, 411
CviKI_1	RGCY	5 cut(s)	5, 57, 139, 289, 411
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	63, 225, 256
DpnII	GATC	3 cut(s)	61, 223, 254
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	4 cut(s)	50, 146, 161, 224
FaiI	YATR	8 cut(s)	48, 111, 144, 159, 222, 237, 401, 415
FatI	CATG	4 cut(s)	46, 142, 157, 220
Fnu4HI	GCNGC	3 cut(s)	6, 140, 300
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	6, 140, 300
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	3 cut(s)	6, 140, 300
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	50, 146, 161, 224
HinfI	GANTC	2 cut(s)	319, 353
Hpy166II	GTNNAC	2 cut(s)	19, 103
Hpy188I	TCNGA	6 cut(s)	117, 153, 228, 259, 352, 358
Hpy188III	TCNNGA	2 cut(s)	221, 241
Hpy8I	GTNNAC	2 cut(s)	19, 103
HpyAV	CCTTC	2 cut(s)	245, 293
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	7 cut(s)	19, 36, 121, 142, 191, 302, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 63
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	50, 146, 161, 224
KpnI	GGTACC	1 cut(s)	269
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	61, 223, 254
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	59, 72, 159, 169, 226, 392
Lsp1109I	GCAGC	2 cut(s)	126, 286
LweI	GCATC	2 cut(s)	45, 108
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	63, 225, 256
MboI	GATC	3 cut(s)	61, 223, 254
MboII	GAAGA	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	21, 59
MluCI	AATT	3 cut(s)	165, 229, 396
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	1 cut(s)	91
MseI	TTAA	2 cut(s)	342, 386
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	42, 63
NdeII	GATC	3 cut(s)	61, 223, 254
NlaIII	CATG	4 cut(s)	50, 146, 161, 224
NlaIV	GGNNCC	3 cut(s)	56, 245, 267
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	7, 141, 301
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PsiI	TTATAA	2 cut(s)	401, 415
PspN4I	GGNNCC	3 cut(s)	56, 245, 267
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	342, 386
SatI	GCNGC	3 cut(s)	6, 140, 300
Sau3AI	GATC	3 cut(s)	61, 223, 254
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	2 cut(s)	21, 59
SetI	ASST	6 cut(s)	102, 141, 197, 249, 331, 374
SfaNI	GCATC	2 cut(s)	45, 108
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	165, 229, 396
SsiI	CCGC	2 cut(s)	6, 8
SspMI	CTAG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	165, 229, 396
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	342, 386
Tru9I	TTAA	2 cut(s)	342, 386
TscAI	CASTG	2 cut(s)	38, 320
TseI	GCWGC	2 cut(s)	139, 299
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	38, 320
Vha464I	CTTAAG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.