Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Forward (+)

65657749 .. 65663850

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCGCGGTCGAAGTGCACCGTTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGATCGCTCAATGCTGGCATTTTGCCCAAATAACAATGAAGTTCACATCTATACTCTGATGCAATCCAAATGGGAAAAGCTGCATGTTCTTCAGAAGATTCTTCTTGCAACAGCAGCTACAGATGGAAAATGCCGAATATTTTCCACTTACATTAAGGTCGTCGATGCAAAGGAATCGAAAACAGTCTCATCTTCAGATGCAAAGTTTGGAGAGCTAATTCTTCAGCTTGATCTATCGTCTTCTTGGGCATTTGGTGTGAGGTGGTCACCAAGTGGCAATACCTTAGCATATGTAGGCCATAACTCTATGATTTACTTTGTCGATGAGGTGGGGCCTTCTCCTCTGGCTCAAAATGTTGCATTCCGTGATTTGCCTCTCCGTGATGTCCTATTTCTTTCTGAACGACTAGTCATTGGCGTGGGATTTGATTGCAACCCCATGGTTTTTGCAGCAGATGAAAGAGGAATATGGAGTTTTATAAGATTTCTTGGGGAAAGAAGGATTACTTCTTCAGGTCCAAAATATGGTTCACAGCTTTCTGGAGCTTTTCGGACGCTATATGGCCAACCAAAGCATGGATTGAGCAATGATACAAATGACCATTCAAGACCACAAGGAACCGTCCATGAAAACTGCATTAATTGTATCGTGCCACTTGGAACTTCAGGGAGTTCTAAAGTAATGCGCTTCAGCACATCAGGATTGGATGGAAAAGTCGTTGTCTGGGATCTGGAGAATCAAGCCGACTTATCAGAGTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

275

Amino Acids

30.42

Weight (kDa)

6.7

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccB7I	CCANNNNNTGG	2 cut(s)	584, 635
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	6, 8
AclWI	GGATC	1 cut(s)	795
AcoI	YGGCCR	2 cut(s)	3, 622
AcuI	CTGAAG	6 cut(s)	134, 237, 266, 555, 708, 733
AdeI	CACNNNGTG	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	584, 635
AgsI	TTSAA	1 cut(s)	666
AhlI	ACTAGT	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	571, 603
AluBI	AGCT	6 cut(s)	139, 176, 274, 286, 595, 605
AluI	AGCT	6 cut(s)	139, 176, 274, 286, 595, 605
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	795
AoxI	GGCC	4 cut(s)	3, 355, 392, 622
ApaLI	GTGCAC	1 cut(s)	17
ApeKI	GCWGC	3 cut(s)	139, 173, 509
AseI	ATTAAT	1 cut(s)	699
Asp700I	GAANNNNTTC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	747
AspS9I	GGNCC	2 cut(s)	392, 575
AsuHPI	GGTGA	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	126, 185, 521
BccI	CCATC	2 cut(s)	176, 761
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcoDI	GTCTC	1 cut(s)	250
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	4 cut(s)	6, 140, 174, 510
BlsI	GCNGC	4 cut(s)	7, 141, 175, 511
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	392, 575
BmiI	GGNNCC	3 cut(s)	56, 393, 679
BmsI	GCATC	4 cut(s)	45, 108, 214, 247
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	621, 812
Bpu10I	CCTNAGC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	6, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 635
Bse3DI	GCAATG	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	6, 498
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	2 cut(s)	584, 635
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	126, 185, 521
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	4 cut(s)	5, 357, 394, 624
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	584, 635
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	4 cut(s)	5, 357, 394, 624
Bsp1286I	GDGCHC	2 cut(s)	21, 59
Bsp143I	GATC	3 cut(s)	61, 289, 787
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	2 cut(s)	6, 8
BspANI	GGCC	4 cut(s)	5, 357, 394, 624
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	56, 393, 679
BspPI	GGATC	1 cut(s)	795
BsrDI	GCAATG	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	6, 498
BssMI	GATC	3 cut(s)	61, 289, 787
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	23, 244, 682
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	30, 343
BstDSI	CCRYGG	2 cut(s)	6, 498
BstEII	GGTNACC	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	3 cut(s)	64, 292, 790
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	61, 289, 787
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 63, 173
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	126, 185, 521
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	4 cut(s)	5, 357, 394, 624
BtgI	CCRYGG	2 cut(s)	6, 498
BtsCI	GGATG	1 cut(s)	772
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	747
Cfr13I	GGNCC	2 cut(s)	392, 575
Cfr42I	CCGCGG	1 cut(s)	9
CseI	GACGC	1 cut(s)	622
CviAII	CATG	5 cut(s)	47, 143, 499, 635, 686
DdeI	CTNAG	2 cut(s)	30, 343
DpnI	GATC	3 cut(s)	63, 291, 789
DpnII	GATC	3 cut(s)	61, 289, 787
DraIII	CACNNNGTG	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	3, 622
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	6 cut(s)	134, 237, 266, 555, 708, 733
Eco91I	GGTNACC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	5 cut(s)	50, 146, 502, 638, 689
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FatI	CATG	5 cut(s)	46, 142, 498, 634, 685
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	6, 140, 174, 510
FokI	GGATG	1 cut(s)	779
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	6, 140, 174, 510
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	4 cut(s)	6, 140, 174, 510
GsuI	CTGGAG	2 cut(s)	621, 812
HaeIII	GGCC	4 cut(s)	5, 357, 394, 624
HgaI	GACGC	1 cut(s)	622
HhaI	GCGC	1 cut(s)	747
Hin1II	CATG	5 cut(s)	50, 146, 502, 638, 689
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HinfI	GANTC	3 cut(s)	157, 233, 796
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	3 cut(s)	19, 103, 590
Hpy188I	TCNGA	6 cut(s)	117, 153, 256, 460, 612, 814
Hpy188III	TCNNGA	4 cut(s)	600, 666, 759, 791
Hpy8I	GTNNAC	3 cut(s)	19, 103, 590
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	405, 552
HpyCH4III	ACNGT	3 cut(s)	23, 244, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 63, 173
HpyF3I	CTNAG	2 cut(s)	30, 343
Hsp92II	CATG	5 cut(s)	50, 146, 502, 638, 689
HspAI	GCGC	1 cut(s)	745
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	61, 289, 787
LmnI	GCTCC	2 cut(s)	54, 602
LpnPI	CCDG	9 cut(s)	59, 72, 389, 558, 585, 711, 744, 769, 776
Lsp1109I	GCAGC	3 cut(s)	126, 185, 521
LweI	GCATC	4 cut(s)	45, 108, 214, 247
MaeI	CTAG	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	3 cut(s)	63, 291, 789
MboI	GATC	3 cut(s)	61, 289, 787
MboII	GAAGA	7 cut(s)	140, 152, 166, 243, 272, 291, 561
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	2 cut(s)	21, 59
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	2 cut(s)	276, 700
MluNI	TGGCCA	1 cut(s)	624
MnlI	CCTC	5 cut(s)	312, 379, 411, 444, 515
Mox20I	TGGCCA	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	3 cut(s)	213, 699, 823
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	624
MspA1I	CMGCKG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	419
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	42, 63, 173
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	61, 289, 787
NlaIII	CATG	5 cut(s)	50, 146, 502, 638, 689
NlaIV	GGNNCC	3 cut(s)	56, 393, 679
NmuCI	GTSAC	1 cut(s)	324
NspI	RCATGY	1 cut(s)	146
PctI	GAATGC	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	157, 233, 796
PflMI	CCANNNNNTGG	2 cut(s)	584, 635
PkrI	GCNGC	4 cut(s)	7, 141, 175, 511
PshBI	ATTAAT	1 cut(s)	699
PsiI	TTATAA	1 cut(s)	539
PspEI	GGTNACC	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	56, 393, 679
PspPI	GGNCC	2 cut(s)	392, 575
PsuI	RGATCY	1 cut(s)	787
RseI	CAYNNNNRTG	1 cut(s)	476
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	213, 699, 823
SatI	GCNGC	4 cut(s)	6, 140, 174, 510
Sau3AI	GATC	3 cut(s)	61, 289, 787
Sau96I	GGNCC	2 cut(s)	392, 575
SduI	GDGCHC	2 cut(s)	21, 59
SfaNI	GCATC	4 cut(s)	45, 108, 214, 247
SfcI	CTRYAG	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	466
Sse9I	AATT	2 cut(s)	276, 700
SsiI	CCGC	2 cut(s)	6, 8
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	1 cut(s)	467
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	23, 244, 682
TaqI	TCGA	4 cut(s)	12, 222, 236, 381
TasI	AATT	2 cut(s)	276, 700
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	157, 233, 796
Tru1I	TTAA	3 cut(s)	213, 699, 823
Tru9I	TTAA	3 cut(s)	213, 699, 823
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	3 cut(s)	139, 173, 509
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	3 cut(s)	111, 531, 702
TspGWI	ACGGA	2 cut(s)	413, 428
TspRI	CASTG	1 cut(s)	38
Van91I	CCANNNNNTGG	2 cut(s)	584, 635
VneI	GTGCAC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	699
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.