Rw2G039250

Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
64222173 .. 64228272
6100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039250.1

Sequence Viewer

Length: 1137 bp
ATGGCCGCGGTCGAAGTGCACCGTTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGATCGCTCAATGCTGGCATTTTGCCCAAATAACAATGAGGTTCACATCTATACTCTGATGCAATCCAAATGGGAAAAGCTGCATGTTCTTCAGAAGCATGACCAAATTATTTCTGGGATAGACTGGAGTGCAAGGTCAAACAAAATAGTTACTTCATCTCATGATCGGAATTCTTATGTCTGGAACCTAGAAGGATCAGAGTGGGTACCAACACTTGTCATCCTCCGGCTAAATCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTAGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAGCAAGAGAACAACTGGTGGGTCAGTAAACTGATCAGAAAAAGACACGACTCTTCTGTTACAAGTGTTGCTTGGCATCCCAATAATATTCTTCTTGCAACAGCATCTACAGATGGAAAATGCCGAATATTTTCCACTTACATTAAGGTCGTCGATGCAAAGGAATCGAAAACAGTCTCATCTTCAGATGCAAAGTTTGGAGAGCTAATTCTTCAGCTTGATCTATTGTCTTCTTGGGCATTTGGTGTGAGGTGGTCACCAAGTGGCAATACCTTAGCATATGTAGGCCATAACTCTATGATTTACTTTGTCGATGAGGTGGGGCCTTCTCCTCTGGCTCAAAATGTTGCATTCCGTGATTTGCCTCTCCGTGATGTCTTATTTCTTTCTGAACGACTAGTCATTGGTGTGGGATTTGATTGCAACCCCATGGTTTTTGCAGCAGATGAAAGAGGAATATGGAGTTTTATAAGATTTCTTGGGGAAAGAAGAATTACTTCTTCAGGTCCAAAATATGGTTCACAGCTTTCTGGAGCATTTCGGACGCTATATGGCCAACCAAAGCATGGATTGAGCAATGATACAAATGACCATTCAAGACCACAAGGAACCGTCCATGAAAACTGCATTAATTGTATTGTGCCGCTTGGAACTTCAGGGAGTTCTAAAGTAATGCGCTTCAGCACATCAGGATTGGATGGAAAAGTCGTTGTCTGGGATCTGGAGAATCAAGCAGACTTATCAGAGTATTTTTAA

Protein Analysis

378

Amino Acids

42.43

Weight (kDa)

8.01

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_EML PF23409 4 - 176 5.9e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 4 - 88 8.8e-13 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 7 - 86 8e-07 THOC3 beta-propeller domain
Beta-prop_RIG_2nd PF23775 9 - 117 1.9e-08 RIG second beta-propeller
WD40_CDC20-Fz PF24807 10 - 130 3.1e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 10 - 173 1.1e-20 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 11 - 87 6.7e-07 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 11 - 85 5.2e-07 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 11 - 172 2.8e-11 Prp19 WD40 domain
WD40_Gbeta PF25391 11 - 172 6.3e-07 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 67 - 184 6.1e-12 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 79 - 172 2.9e-06 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 90 - 227 3.3e-08 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 100 - 232 7.9e-12 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 104 - 189 2.2e-07 CAF1B/HIR1 beta-propeller domain
ANAPC4_WD40 PF12894 104 - 174 4.7e-07 Anaphase-promoting complex subunit 4 WD40 domain
WD40 PF00400 141 - 171 1.2e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 851
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 2 cut(s) 896, 947
AccII CGCG 1 cut(s) 8
AciI CCGC 3 cut(s) 6, 8, 1025
AclWI GGATC 2 cut(s) 262, 1107
AcoI YGGCCR 2 cut(s) 3, 934
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 6 cut(s) 134, 549, 578, 867, 1020, 1045
AdeI CACNNNGTG 2 cut(s) 308, 644
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 896, 947
AgsI TTSAA 1 cut(s) 978
AhlI ACTAGT 1 cut(s) 778
AjuI GAANNNNNNNTTGG 2 cut(s) 883, 915
AluBI AGCT 4 cut(s) 139, 586, 598, 907
AluI AGCT 4 cut(s) 139, 586, 598, 907
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 562
Alw44I GTGCAC 1 cut(s) 17
AlwI GGATC 2 cut(s) 262, 1107
AoxI GGCC 4 cut(s) 3, 667, 704, 934
ApaLI GTGCAC 1 cut(s) 17
ApeKI GCWGC 3 cut(s) 139, 299, 821
ApoI RAATTY 1 cut(s) 229
AseI ATTAAT 1 cut(s) 1011
Asp700I GAANNNNTTC 2 cut(s) 511, 877
Asp718I GGTACC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 1059
AspS9I GGNCC 2 cut(s) 704, 887
AsuHPI GGTGA 1 cut(s) 630
AvaII GGWCC 1 cut(s) 887
BaeGI GKGCMC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 936
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 126, 286, 833
BccI CCATC 2 cut(s) 488, 1073
BcgI CGANNNNNNTGC 2 cut(s) 528, 562
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 562
BcuI ACTAGT 1 cut(s) 778
BfaI CTAG 2 cut(s) 248, 779
BfmI CTRYAG 2 cut(s) 342, 489
BisI GCNGC 5 cut(s) 6, 140, 300, 822, 1025
BlsI GCNGC 5 cut(s) 7, 141, 301, 823, 1026
Bme18I GGWCC 1 cut(s) 887
BmgT120I GGNCC 2 cut(s) 704, 887
BmiI GGNNCC 5 cut(s) 56, 245, 267, 705, 991
BmsI GCATC 6 cut(s) 45, 108, 466, 494, 526, 559
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 3 cut(s) 205, 933, 1124
Bpu10I CCTNAGC 1 cut(s) 655
BsaJI CCNNGG 2 cut(s) 6, 810
Bsc4I CCNNNNNNNGG 2 cut(s) 896, 947
Bse1I ACTGG 2 cut(s) 188, 401
Bse3DI GCAATG 1 cut(s) 964
BseDI CCNNGG 2 cut(s) 6, 810
BseGI GGATG 3 cut(s) 279, 457, 1084
BseLI CCNNNNNNNGG 2 cut(s) 896, 947
BseMI GCAATG 1 cut(s) 964
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 188, 401
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 3 cut(s) 126, 286, 833
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 4 cut(s) 5, 669, 706, 936
BshNI GGYRCC 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 896, 947
BsmAI GTCTC 1 cut(s) 562
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 4 cut(s) 5, 669, 706, 936
Bsp1286I GDGCHC 2 cut(s) 21, 59
Bsp143I GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 3 cut(s) 6, 8, 1025
BspANI GGCC 4 cut(s) 5, 669, 706, 936
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 5 cut(s) 56, 245, 267, 705, 991
BspPI GGATC 2 cut(s) 262, 1107
BspT107I GGYRCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 964
BsrI ACTGG 2 cut(s) 188, 401
BssECI CCNNGG 2 cut(s) 6, 810
BssMI GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
BssT1I CCWWGG 1 cut(s) 810
Bst4CI ACNGT 4 cut(s) 23, 364, 556, 994
Bst6I CTCTTC 1 cut(s) 439
BstAPI GCANNNNNTGC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 30, 655
BstDSI CCRYGG 2 cut(s) 6, 810
BstEII GGTNACC 1 cut(s) 636
BstF5I GGATG 3 cut(s) 279, 457, 1084
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 1059
BstKTI GATC 6 cut(s) 64, 226, 257, 417, 604, 1102
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 42, 63
BstNSI RCATGY 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 636
BstSFI CTRYAG 2 cut(s) 342, 489
BstSLI GKGCMC 1 cut(s) 21
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 126, 286, 833
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 1099
BstYI RGATCY 1 cut(s) 1099
BsuRI GGCC 4 cut(s) 5, 669, 706, 936
BtgI CCRYGG 2 cut(s) 6, 810
BtsCI GGATG 3 cut(s) 279, 457, 1084
BtsIMutI CAGTG 2 cut(s) 38, 320
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 1059
Cfr13I GGNCC 2 cut(s) 704, 887
Cfr42I CCGCGG 1 cut(s) 9
CseI GACGC 1 cut(s) 934
Csp6I GTAC 1 cut(s) 266
CviAII CATG 7 cut(s) 47, 143, 158, 221, 811, 947, 998
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 2 cut(s) 30, 655
DpnI GATC 6 cut(s) 63, 225, 256, 416, 603, 1101
DpnII GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
DraIII CACNNNGTG 2 cut(s) 308, 644
EaeI YGGCCR 2 cut(s) 3, 934
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 887
Eco57I CTGAAG 6 cut(s) 134, 549, 578, 867, 1020, 1045
Eco91I GGTNACC 1 cut(s) 636
EcoO109I RGGNCCY 1 cut(s) 704
EcoO65I GGTNACC 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 7 cut(s) 50, 146, 161, 224, 814, 950, 1001
FalI AAGNNNNNCTT 4 cut(s) 436, 468, 862, 894
FatI CATG 7 cut(s) 46, 142, 157, 220, 810, 946, 997
FauNDI CATATG 2 cut(s) 371, 661
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 5 cut(s) 6, 140, 300, 822, 1025
FokI GGATG 3 cut(s) 266, 444, 1091
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 5 cut(s) 6, 140, 300, 822, 1025
FspBI CTAG 2 cut(s) 248, 779
GlaI GCGC 1 cut(s) 1058
GluI GCNGC 5 cut(s) 6, 140, 300, 822, 1025
GsuI CTGGAG 3 cut(s) 205, 933, 1124
HaeIII GGCC 4 cut(s) 5, 669, 706, 936
HapII CCGG 1 cut(s) 286
HgaI GACGC 1 cut(s) 934
HhaI GCGC 1 cut(s) 1059
Hin1II CATG 7 cut(s) 50, 146, 161, 224, 814, 950, 1001
Hin6I GCGC 1 cut(s) 1057
HinP1I GCGC 1 cut(s) 1057
HinfI GANTC 4 cut(s) 319, 431, 545, 1108
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 630
Hpy166II GTNNAC 4 cut(s) 19, 103, 410, 902
Hpy188I TCNGA 9 cut(s) 117, 153, 228, 259, 419, 568, 772, 924, 1126
Hpy188III TCNNGA 6 cut(s) 221, 241, 912, 978, 1071, 1103
Hpy8I GTNNAC 4 cut(s) 19, 103, 410, 902
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 245, 717
HpyCH4III ACNGT 4 cut(s) 23, 364, 556, 994
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 63
HpyF3I CTNAG 2 cut(s) 30, 655
Hsp92II CATG 7 cut(s) 50, 146, 161, 224, 814, 950, 1001
HspAI GCGC 1 cut(s) 1057
KpnI GGTACC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 414
KspI CCGCGG 1 cut(s) 9
Kzo9I GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
LmnI GCTCC 2 cut(s) 54, 914
Lsp1109I GCAGC 3 cut(s) 126, 286, 833
LweI GCATC 6 cut(s) 45, 108, 466, 494, 526, 559
MaeI CTAG 2 cut(s) 248, 779
MaeIII GTNAC 3 cut(s) 208, 439, 636
MalI GATC 6 cut(s) 63, 225, 256, 416, 603, 1101
MboI GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
MboII GAAGA 8 cut(s) 140, 426, 464, 555, 584, 603, 873, 882
MflI RGATCY 1 cut(s) 1099
MhlI GDGCHC 2 cut(s) 21, 59
MlsI TGGCCA 1 cut(s) 936
MluCI AATT 5 cut(s) 165, 229, 588, 873, 1012
MluNI TGGCCA 1 cut(s) 936
MlyI GAGTC 2 cut(s) 328, 425
MnlI CCTC 7 cut(s) 91, 293, 624, 691, 723, 756, 827
Mox20I TGGCCA 1 cut(s) 936
MroXI GAANNNNTTC 2 cut(s) 511, 877
MscI TGGCCA 1 cut(s) 936
MseI TTAA 3 cut(s) 525, 1011, 1135
MslI CAYNNNNRTG 1 cut(s) 788
Msp20I TGGCCA 1 cut(s) 936
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 731
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 42, 63
NcoI CCATGG 1 cut(s) 810
NdeI CATATG 2 cut(s) 371, 661
NdeII GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
NlaIII CATG 7 cut(s) 50, 146, 161, 224, 814, 950, 1001
NlaIV GGNNCC 5 cut(s) 56, 245, 267, 705, 991
NmuCI GTSAC 1 cut(s) 636
NspI RCATGY 1 cut(s) 146
PagI TCATGA 1 cut(s) 220
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 2 cut(s) 511, 877
PfeI GAWTC 2 cut(s) 545, 1108
PflMI CCANNNNNTGG 2 cut(s) 896, 947
PkrI GCNGC 5 cut(s) 7, 141, 301, 823, 1026
PleI GAGTC 2 cut(s) 327, 425
PpsI GAGTC 2 cut(s) 327, 425
PshBI ATTAAT 1 cut(s) 1011
PsiI TTATAA 1 cut(s) 851
PspEI GGTNACC 1 cut(s) 636
PspN4I GGNNCC 5 cut(s) 56, 245, 267, 705, 991
PspPI GGNCC 2 cut(s) 704, 887
PsuI RGATCY 1 cut(s) 1099
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 788
SacII CCGCGG 1 cut(s) 9
SaqAI TTAA 3 cut(s) 525, 1011, 1135
SatI GCNGC 5 cut(s) 6, 140, 300, 822, 1025
Sau3AI GATC 6 cut(s) 61, 223, 254, 414, 601, 1099
Sau96I GGNCC 2 cut(s) 704, 887
SchI GAGTC 2 cut(s) 328, 425
SduI GDGCHC 2 cut(s) 21, 59
SfaNI GCATC 6 cut(s) 45, 108, 466, 494, 526, 559
SfcI CTRYAG 2 cut(s) 342, 489
Sfr303I CCGCGG 1 cut(s) 9
SgrBI CCGCGG 1 cut(s) 9
SinI GGWCC 1 cut(s) 887
SmiMI CAYNNNNRTG 1 cut(s) 788
SpeI ACTAGT 1 cut(s) 778
Sse9I AATT 5 cut(s) 165, 229, 588, 873, 1012
SsiI CCGC 3 cut(s) 6, 8, 1025
SspI AATATT 2 cut(s) 469, 510
SspMI CTAG 2 cut(s) 248, 779
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 4 cut(s) 23, 364, 556, 994
TaqI TCGA 4 cut(s) 12, 534, 548, 693
TasI AATT 5 cut(s) 165, 229, 588, 873, 1012
TauI GCSGC 2 cut(s) 8, 1027
TfiI GAWTC 2 cut(s) 545, 1108
Tru1I TTAA 3 cut(s) 525, 1011, 1135
Tru9I TTAA 3 cut(s) 525, 1011, 1135
TscAI CASTG 2 cut(s) 38, 320
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 3 cut(s) 139, 299, 821
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 3 cut(s) 204, 843, 1014
TspGWI ACGGA 2 cut(s) 725, 740
TspRI CASTG 2 cut(s) 38, 320
Van91I CCANNNNNTGG 2 cut(s) 896, 947
VneI GTGCAC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 887
VspI ATTAAT 1 cut(s) 1011
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 2 cut(s) 170, 944
XmnI GAANNNNTTC 2 cut(s) 511, 877
XspI CTAG 2 cut(s) 248, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.