Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000480.1

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Forward (+)

92989 .. 96268

Gene Structure 3280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000480.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgctccattgtatgttgtctataagttcttggaaatccaatgtaaatgtacattcttcactgttgctcttttctgtatccttagaaaacaagtttgctgttggaagtggggcaaaaactgtttgcatatgctactatgagcaagagaacaactggtgggtcagtaaacttatcagaaaaagacacgactcttctgttacaagtgttgcttggcatcccaataatattcttcttgcaacagcatctacagatggaaaatgccgaatattttccacttatattaaggtcgtcgatgcaaaggaatcgaaaacagtctcatcttcagatgcaaagtttggagagctaattcttcagcttgatctatcgtcttcttgggcatttggtgtgaggtggtcaccaagtggcaataccttagtatatgtaggccataactctatgatttactttgtcgatgaggtgggaccttctcctctggctcaaaatgttgcattccgtgatttgcctctccgtgatgtcttatttctttctgaacgactagtcattggcgtgggattcgattgcaaccccatggtttttgcagcagatgaaagaggaatatggagttttataagatttcttggggaaagaaagattacatcttcaggtccaaaatatggttcacagctttctggagcatttcggacgctatatggccaaccaaagcatggattgagcaatgatacaaatgaccattcaagaccacagggaaccgtccatgaaaactgcattaagtactccactgtttcttctcttagacattccttgtttagtatcccaacttccactggaaatgttatgcacccactctacctgtcatggacaagtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

289

Amino Acids

32.16

Weight (kDa)

8.85

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AccB7I	CCANNNNNTGG	2 cut(s)	653, 704
AcoI	YGGCCR	1 cut(s)	691
AcuI	CTGAAG	3 cut(s)	306, 335, 624
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	51, 773
AfiI	CCNNNNNNNGG	2 cut(s)	653, 704
AgsI	TTSAA	1 cut(s)	735
AhlI	ACTAGT	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	640, 672
AluBI	AGCT	3 cut(s)	343, 355, 664
AluI	AGCT	3 cut(s)	343, 355, 664
Alw26I	GTCTC	1 cut(s)	319
AoxI	GGCC	2 cut(s)	424, 691
ApeKI	GCWGC	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	461, 644
AsuHPI	GGTGA	1 cut(s)	387
AvaII	GGWCC	2 cut(s)	461, 644
BalI	TGGCCA	1 cut(s)	693
BarI	GAAGNNNNNNTAC	2 cut(s)	802, 834
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	590
BccI	CCATC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciVI	GTATCC	2 cut(s)	88, 821
BcoDI	GTCTC	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	2 cut(s)	88, 821
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
BmcAI	AGTACT	1 cut(s)	773
Bme18I	GGWCC	2 cut(s)	461, 644
BmgT120I	GGNCC	2 cut(s)	461, 644
BmiI	GGNNCC	2 cut(s)	462, 748
BmsI	GCATC	4 cut(s)	223, 251, 283, 316
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 704
Bse1I	ACTGG	2 cut(s)	158, 829
Bse3DI	GCAATG	1 cut(s)	721
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	653, 704
BseMI	GCAATG	1 cut(s)	721
BseNI	ACTGG	2 cut(s)	158, 829
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	590
BshFI	GGCC	2 cut(s)	426, 693
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	653, 704
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	426, 693
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	567
BspANI	GGCC	2 cut(s)	426, 693
BspLI	GGNNCC	2 cut(s)	462, 748
BsrDI	GCAATG	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	158, 829
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	567
Bst4CI	ACNGT	5 cut(s)	63, 121, 313, 751, 781
Bst6I	CTCTTC	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	82, 412, 791
BstDSI	CCRYGG	1 cut(s)	567
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	590
BstV2I	GAAGAC	1 cut(s)	360
BsuI	GTATCC	2 cut(s)	88, 821
BsuRI	GGCC	2 cut(s)	426, 693
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	59, 777, 822
Cfr13I	GGNCC	2 cut(s)	461, 644
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	50, 772
CviAII	CATG	4 cut(s)	568, 704, 755, 855
CviJI	RGCY	6 cut(s)	343, 355, 426, 476, 664, 693
CviKI_1	RGCY	6 cut(s)	343, 355, 426, 476, 664, 693
CviQI	GTAC	2 cut(s)	50, 772
DdeI	CTNAG	3 cut(s)	82, 412, 791
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	461, 644
Eco57I	CTGAAG	3 cut(s)	306, 335, 624
Eco91I	GGTNACC	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	461
EcoO65I	GGTNACC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	4 cut(s)	571, 707, 758, 858
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	4 cut(s)	567, 703, 754, 854
FauNDI	CATATG	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	1 cut(s)	579
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	426, 693
HgaI	GACGC	1 cut(s)	691
Hin1II	CATG	4 cut(s)	571, 707, 758, 858
HinfI	GANTC	3 cut(s)	188, 302, 552
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	2 cut(s)	167, 659
Hpy188I	TCNGA	4 cut(s)	176, 325, 529, 681
Hpy188III	TCNNGA	2 cut(s)	669, 735
Hpy8I	GTNNAC	2 cut(s)	167, 659
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	5 cut(s)	63, 121, 313, 751, 781
HpyCH4V	TGCA	9 cut(s)	126, 236, 296, 329, 488, 561, 578, 765, 838
HpyF3I	CTNAG	3 cut(s)	82, 412, 791
Hsp92II	CATG	4 cut(s)	571, 707, 758, 858
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	2 cut(s)	9, 671
LpnPI	CCDG	7 cut(s)	139, 458, 627, 654, 728, 810, 863
Lsp1109I	GCAGC	1 cut(s)	590
LweI	GCATC	4 cut(s)	223, 251, 283, 316
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	2 cut(s)	196, 393
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	8 cut(s)	48, 183, 221, 312, 341, 360, 630, 777
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	2 cut(s)	345, 865
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	381, 448, 480, 513, 584
Mox20I	TGGCCA	1 cut(s)	693
MroXI	GAANNNNTTC	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	693
MseI	TTAA	2 cut(s)	282, 768
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	128
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	571, 707, 758, 858
NlaIV	GGNNCC	2 cut(s)	462, 748
NmuCI	GTSAC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	302, 552
PflMI	CCANNNNNTGG	2 cut(s)	653, 704
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	461
PspEI	GGTNACC	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	462, 748
PspPI	GGNCC	2 cut(s)	461, 644
PspPPI	RGGWCCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	51, 773
RsaNI	GTAC	2 cut(s)	50, 772
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	282, 768
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	2 cut(s)	461, 644
ScaI	AGTACT	1 cut(s)	773
SchI	GAGTC	1 cut(s)	182
SfaNI	GCATC	4 cut(s)	223, 251, 283, 316
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	2 cut(s)	461, 644
SmiMI	CAYNNNNRTG	1 cut(s)	545
SpeI	ACTAGT	1 cut(s)	535
Sse9I	AATT	2 cut(s)	345, 865
SspI	AATATT	2 cut(s)	226, 267
SspMI	CTAG	1 cut(s)	536
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	5 cut(s)	63, 121, 313, 751, 781
TaqI	TCGA	4 cut(s)	291, 305, 450, 555
TasI	AATT	2 cut(s)	345, 865
TatI	WGTACW	2 cut(s)	49, 771
TfiI	GAWTC	2 cut(s)	302, 552
Tru1I	TTAA	2 cut(s)	282, 768
Tru9I	TTAA	2 cut(s)	282, 768
TscAI	CASTG	3 cut(s)	66, 784, 829
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	2 cut(s)	600, 771
TspGWI	ACGGA	2 cut(s)	482, 497
TspRI	CASTG	3 cut(s)	66, 784, 829
Van91I	CCANNNNNTGG	2 cut(s)	653, 704
VpaK11BI	GGWCC	2 cut(s)	461, 644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	536
ZrmI	AGTACT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.