AT2G30933

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007207
Physical Location & Seq
Reverse (-)
13163993 .. 13166902
2910 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30933.2

Sequence Viewer

Length: 684 bp
ATGGATAAAGGCTTCAGATTAGTAACCAGTCTTCTTCTTCTCTCCTTCTTCTTCTCAGGTACAAAAGCAATTACTGAACCAATAGAAGAAGAAAAAGACATAACCACACCATTAGCCACAAACCCAACCACCACACCAACAACCGTGGTCCCTAACTCCGACTCTGACGCTTCCGCGGTGGCCACAACGCCACTAACGATTCCATCGTCACCACACGGTGTAGCCTACCCAGGTGATCAGAGCTGGTGCGTTGCTAGAGAGAACGTTGCAAAAATGGCGTTACAAGCGGCTTTGGACTATGCATGTGGGATTGGTGGAGCAGACTGCTCTGAGATACAAGAAGGAGGAAATTGTTATAACCCCAACTCGTTGAGAGCACATGCCTCTTTTGCCTTCAATAGTTATTACCAGAAGAATCCAATCCCTAGTAGTTGCAATTTTGATGGAACTGCTATCACTATCAGTGCTGACCCAAGTTTAGGTTCATGCCACTTTCCATCTACAAGCACGAGTGAATCGATATTGAACGTAACAAGTGAAGATGGATTAGGGCTTTTCGGGAGAATACCATCTCATCCAACTCCCAAGCCTGAAGCTTCAACCTCCTCCTCAAGAACTTTGATCTCATTTCTCTACTTCCTTTGCTTTTGTGTTTTATATCCACTTGTTATAACCTTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

227

Amino Acids

24.07

Weight (kDa)

4.73

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 81 - 151 3.5e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 357, 671
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 174, 176, 287
AclI AACGTT 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 3 cut(s) 397, 526, 600
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 2 cut(s) 466, 498
AluBI AGCT 2 cut(s) 243, 596
AluI AGCT 2 cut(s) 243, 596
Alw21I GWGCWC 1 cut(s) 379
AoxI GGCC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 201, 245
AvaII GGWCC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BauI CACGAG 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 5 cut(s) 211, 437, 505, 536, 577
BciT130I CCWGG 1 cut(s) 231
BclI TGATCA 1 cut(s) 235
BfaI CTAG 2 cut(s) 255, 426
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 595
Bsa29I ATCGAT 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 144, 174, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 3 cut(s) 144, 174, 229
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMII CTCAG 2 cut(s) 69, 321
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 595, 598
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 235, 621
BspACI CCGC 3 cut(s) 174, 176, 287
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 68, 322
BspDI ATCGAT 1 cut(s) 518
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 3 cut(s) 144, 174, 229
BssMI GATC 2 cut(s) 235, 621
BssSI CACGAG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 145, 218
BstDEI CTNAG 2 cut(s) 55, 330
BstDSI CCRYGG 2 cut(s) 144, 174
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 2 cut(s) 238, 624
BstMBI GATC 2 cut(s) 235, 621
BstMWI GCNNNNNNNGC 3 cut(s) 275, 284, 389
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 2 cut(s) 306, 383
BstSCI CCNGG 1 cut(s) 229
BstUI CGCG 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 23
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 2 cut(s) 144, 174
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 148
Cfr42I CCGCGG 1 cut(s) 177
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviAII CATG 3 cut(s) 303, 380, 486
CviJI RGCY 9 cut(s) 12, 116, 182, 224, 243, 290, 553, 589, 596
CviKI_1 RGCY 9 cut(s) 12, 116, 182, 224, 243, 290, 553, 589, 596
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 55, 330
DpnI GATC 2 cut(s) 237, 623
DpnII GATC 2 cut(s) 235, 621
DraIII CACNNNGTG 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 304
FaeI CATG 3 cut(s) 306, 383, 489
FaiI YATR 9 cut(s) 101, 300, 304, 357, 381, 487, 658, 671, 682
FaqI GGGAC 1 cut(s) 134
FatI CATG 3 cut(s) 302, 379, 485
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 561
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 2 cut(s) 255, 426
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 182
HgaI GACGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 306, 383, 489
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 4 cut(s) 161, 199, 415, 515
HphI GGTGA 2 cut(s) 201, 245
Hpy188I TCNGA 5 cut(s) 17, 160, 166, 240, 331
Hpy188III TCNNGA 2 cut(s) 559, 612
HpyAV CCTTC 3 cut(s) 55, 335, 403
HpyCH4III ACNGT 2 cut(s) 145, 218
HpyCH4IV ACGT 2 cut(s) 264, 528
HpyCH4V TGCA 3 cut(s) 269, 302, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 284, 389
HpyF3I CTNAG 2 cut(s) 55, 330
HpySE526I ACGT 2 cut(s) 264, 528
Hsp92II CATG 3 cut(s) 306, 383, 489
Ksp22I TGATCA 1 cut(s) 235
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 2 cut(s) 235, 621
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 7 cut(s) 40, 42, 216, 229, 243, 422, 603
MaeI CTAG 2 cut(s) 255, 426
MaeII ACGT 2 cut(s) 264, 528
MaeIII GTNAC 4 cut(s) 22, 207, 279, 529
MalI GATC 2 cut(s) 237, 623
MboI GATC 2 cut(s) 235, 621
MboII GAAGA 9 cut(s) 23, 26, 29, 40, 43, 98, 101, 424, 551
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 3 cut(s) 69, 349, 436
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 2 cut(s) 183, 602
MnlI CCTC 5 cut(s) 338, 394, 613, 616, 619
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 304
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 677
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 275, 284, 389
NdeII GATC 2 cut(s) 235, 621
NlaIII CATG 3 cut(s) 306, 383, 489
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 2 cut(s) 306, 383
PcsI WCGNNNNNNNCGW 3 cut(s) 194, 203, 515
PfeI GAWTC 3 cut(s) 199, 415, 515
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PsiI TTATAA 2 cut(s) 357, 671
Psp1406I AACGTT 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SacII CCGCGG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 235, 621
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 379
SetI ASST 9 cut(s) 61, 235, 245, 267, 484, 531, 598, 605, 677
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
Sse9I AATT 3 cut(s) 69, 349, 436
SsiI CCGC 3 cut(s) 174, 176, 287
SspMI CTAG 2 cut(s) 255, 426
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 145, 218
TaiI ACGT 2 cut(s) 267, 531
TaqI TCGA 1 cut(s) 518
TasI AATT 3 cut(s) 69, 349, 436
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 3 cut(s) 199, 415, 515
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 148
XceI RCATGY 2 cut(s) 306, 383
XspI CTAG 2 cut(s) 255, 426
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.