Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007207

Physical Location & Seq

Genomic Coordinates Reverse (-)

19102717 .. 19105582

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G173500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTTATTTTTTGAAATAAGGAACCACTACCCTAATCAGATTTGGCACCATTTTATTTCCATGTTCAAAAAGTGCAAAGTTGAAAAAATAAAGCTTACTTTAGTTTTCATTTCTAGTACAGGTTTGAAGGTGACAAAAAAAGGAAAGAACGTTGGGAATATGAAAGAACAAGCCCATCAAAAGAGAAGGCTACAATTCACAAAAACTCCAATTTCTACCACCAAAAGGGACATCACAACTCCAATAACAACTGTTCCTACAATAACTCCAACCAATCCCACTTCATCAATACCAATTGCGAACCCAAATTCAGACCCAGATTCAACCTCTCCAGTCAGTGCAACCCCTAGCATGACCCCATTTTCTACAACACCATCATCCACTGGTTCAAGTTGGTGTGTTGCTAGCCAAAGTGCATCCCAAATGGCACTACAAGTTGCTTTGGACTATGCTTGTGGCTATGGTGGCACAGATTGCTCAGAAATTCAGTCTGGTAGAAGCTGTTACAACCCAAACAATGTCCGGGATCACGCTTCTTTTGCGTTCAATAACTACTATCAGAAGAACCCAGTTCCAAATAGCTGCAATTTTGGTGGAACTGCTGTGATCACTAGCACTGACCCAAGTACCGGGACATGTCAGTATCCATCTACCAGCACAAGTTCATCAGTCTTGAACACAACAAATACAAGTGGCTCAACTGTTTTTGGTGCTGTACCTTCTGGCCCTTCTACCTCAGCATCTGCAGCAGCTGCAAGCTCACATAGCCTTAGAAATATATTCATCATGGCCTGTTTAATTTTGTTCACAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

272

Amino Acids

28.98

Weight (kDa)

9.32

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30933 AT2G30933 AT2G30933
fragaria_vesca	FvH4_6g38290 FvH4_6g38290 FvH4_6g38290 FvH4_6g38290
malus_domestica	MD09G1151300.v1.1 MD17G1139000.v1.1
prunus_persica	Prupe.3G173500_v2.0.a1 Prupe.3G173500_v2.0.a1 Prupe.3G173500_v2.0.a1 Prupe.3G173500_v2.0.a1
pyrus_communis	pycom17g13200
rosa_chinensis	RchiOBHm_Chr2g0151601
rosa_laevigata	RLG00000020562
rosa_multiflora	Rmu_co8483005.1_g000001 Rmu_sc0005287.1_g000008
rosa_roxburghii	Rroxscaffold_2G00096330
rosa_rugosa	Rorug02G0427100
rosa_samantha	Rh2AG488000 Rh2BG500600 Rh2CG474500 Rh2DG511800
rosa_wichuraiana	Rw2G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	45
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	307, 483
AfaI	GTAC	3 cut(s)	118, 628, 717
AfiI	CCNNNNNNNGG	2 cut(s)	225, 629
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	8 cut(s)	14, 67, 83, 127, 324, 390, 547, 676
AluBI	AGCT	5 cut(s)	94, 501, 582, 752, 759
AluI	AGCT	5 cut(s)	94, 501, 582, 752, 759
AlwI	GGATC	1 cut(s)	534
AlwNI	CAGNNNCTG	2 cut(s)	743, 752
AoxI	GGCC	2 cut(s)	724, 789
ApeKI	GCWGC	4 cut(s)	582, 746, 749, 752
ApoI	RAATTY	2 cut(s)	307, 483
AspS9I	GGNCC	1 cut(s)	725
AsuC2I	CCSGG	2 cut(s)	524, 631
AsuHPI	GGTGA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	404
BaeI	ACNNNNGTAYC	2 cut(s)	610, 643
BanI	GGYRCC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	736
BbvI	GCAGC	4 cut(s)	569, 739, 758, 761
BccI	CCATC	3 cut(s)	183, 382, 655
BciVI	GTATCC	1 cut(s)	654
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	2 cut(s)	524, 631
BfaI	CTAG	4 cut(s)	114, 348, 405, 612
BfmI	CTRYAG	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	654
BisI	GCNGC	4 cut(s)	583, 747, 750, 753
BlsI	GCNGC	4 cut(s)	584, 748, 751, 754
Bme1390I	CCNGG	2 cut(s)	524, 631
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	2 cut(s)	23, 47
BmrFI	CCNGG	2 cut(s)	524, 631
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	425, 749
BmtI	GCTAGC	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	736
BpuMI	CCSGG	2 cut(s)	524, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 629
Bse1I	ACTGG	3 cut(s)	332, 388, 569
BseGI	GGATG	2 cut(s)	377, 416
BseLI	CCNNNNNNNGG	2 cut(s)	225, 629
BseMII	CTCAG	2 cut(s)	492, 750
BseNI	ACTGG	3 cut(s)	332, 388, 569
BseXI	GCAGC	4 cut(s)	569, 739, 758, 761
BshFI	GGCC	2 cut(s)	726, 791
BshNI	GGYRCC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	523, 630
BslFI	GGGAC	2 cut(s)	242, 646
BslI	CCNNNNNNNGG	2 cut(s)	225, 629
BsmFI	GGGAC	2 cut(s)	242, 646
BsnI	GGCC	2 cut(s)	726, 791
Bsp143I	GATC	2 cut(s)	526, 606
BspANI	GGCC	2 cut(s)	726, 791
BspCNI	CTCAG	2 cut(s)	491, 749
BspLI	GGNNCC	2 cut(s)	23, 47
BspMAI	CTGCAG	1 cut(s)	748
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	332, 388, 569
BssMI	GATC	2 cut(s)	526, 606
Bst4CI	ACNGT	2 cut(s)	253, 703
BstAPI	GCANNNNNTGC	2 cut(s)	474, 752
BstC8I	GCNNGC	2 cut(s)	406, 757
BstDEI	CTNAG	3 cut(s)	478, 736, 770
BstF5I	GGATG	2 cut(s)	377, 416
BstKTI	GATC	2 cut(s)	529, 609
BstMBI	GATC	2 cut(s)	526, 606
BstMWI	GCNNNNNNNGC	6 cut(s)	465, 474, 539, 746, 752, 765
BstNSI	RCATGY	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	522, 629
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	4 cut(s)	569, 739, 758, 761
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	726, 791
BtsCI	GGATG	2 cut(s)	377, 416
BtsIMutI	CAGTG	3 cut(s)	343, 381, 615
Cac8I	GCNNGC	2 cut(s)	406, 757
CaiI	CAGNNNCTG	2 cut(s)	743, 752
Cfr13I	GGNCC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	117, 627, 716
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	4 cut(s)	61, 352, 636, 787
CviQI	GTAC	3 cut(s)	117, 627, 716
DdeI	CTNAG	3 cut(s)	478, 736, 770
DpnI	GATC	2 cut(s)	528, 608
DpnII	GATC	2 cut(s)	526, 606
FaeI	CATG	4 cut(s)	64, 355, 639, 790
FaqI	GGGAC	2 cut(s)	242, 646
FatI	CATG	4 cut(s)	60, 351, 635, 786
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	4 cut(s)	583, 747, 750, 753
FokI	GGATG	2 cut(s)	364, 403
Fsp4HI	GCNGC	4 cut(s)	583, 747, 750, 753
FspBI	CTAG	4 cut(s)	114, 348, 405, 612
GluI	GCNGC	4 cut(s)	583, 747, 750, 753
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	726, 791
HapII	CCGG	2 cut(s)	523, 630
Hin1II	CATG	4 cut(s)	64, 355, 639, 790
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	2 cut(s)	523, 630
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	807
Hpy188I	TCNGA	4 cut(s)	39, 313, 481, 561
Hpy188III	TCNNGA	1 cut(s)	673
Hpy8I	GTNNAC	1 cut(s)	807
HpyAV	CCTTC	4 cut(s)	121, 180, 729, 738
HpyCH4III	ACNGT	2 cut(s)	253, 703
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	75, 341, 416, 585, 746, 755
HpyF10VI	GCNNNNNNNGC	6 cut(s)	465, 474, 539, 746, 752, 765
HpyF3I	CTNAG	3 cut(s)	478, 736, 770
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	64, 355, 639, 790
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	526, 606
Lsp1109I	GCAGC	4 cut(s)	569, 739, 758, 761
LweI	GCATC	2 cut(s)	425, 749
MaeI	CTAG	4 cut(s)	114, 348, 405, 612
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	130, 503
MalI	GATC	2 cut(s)	528, 608
MboI	GATC	2 cut(s)	526, 606
MboII	GAAGA	1 cut(s)	574
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	7 cut(s)	194, 210, 294, 307, 483, 586, 798
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	2 cut(s)	337, 745
MseI	TTAA	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	523, 630
MspR9I	CCNGG	2 cut(s)	524, 631
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	465, 474, 539, 746, 752, 765
NciI	CCSGG	2 cut(s)	524, 631
NdeII	GATC	2 cut(s)	526, 606
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	4 cut(s)	64, 355, 639, 790
NlaIV	GGNNCC	2 cut(s)	23, 47
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	639
PciI	ACATGT	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	4 cut(s)	584, 748, 751, 754
PscI	ACATGT	1 cut(s)	635
Psp1406I	AACGTT	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	23, 47
PspPI	GGNCC	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	2 cut(s)	743, 752
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	118, 628, 717
RsaNI	GTAC	3 cut(s)	117, 627, 716
SaqAI	TTAA	1 cut(s)	797
SatI	GCNGC	4 cut(s)	583, 747, 750, 753
Sau3AI	GATC	2 cut(s)	526, 606
Sau96I	GGNCC	1 cut(s)	725
ScrFI	CCNGG	2 cut(s)	524, 631
SfaNI	GCATC	2 cut(s)	425, 749
SfcI	CTRYAG	1 cut(s)	744
Sse9I	AATT	7 cut(s)	194, 210, 294, 307, 483, 586, 798
SspMI	CTAG	4 cut(s)	114, 348, 405, 612
StyD4I	CCNGG	2 cut(s)	522, 629
TaaI	ACNGT	2 cut(s)	253, 703
TaiI	ACGT	1 cut(s)	153
TasI	AATT	7 cut(s)	194, 210, 294, 307, 483, 586, 798
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	797
Tru9I	TTAA	1 cut(s)	797
TscAI	CASTG	3 cut(s)	343, 388, 622
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	4 cut(s)	582, 746, 749, 752
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	5 cut(s)	97, 176, 273, 654, 772
TspRI	CASTG	3 cut(s)	343, 388, 622
XapI	RAATTY	2 cut(s)	307, 483
XceI	RCATGY	1 cut(s)	639
XspI	CTAG	4 cut(s)	114, 348, 405, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.