Rorug02G0427100

glucan endo-1,3-beta-glucosidase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
54785283 .. 54785477
195 bp
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UTR
Exon/CDS
Intron
Rorug02G0427100.1

Sequence Viewer

Length: 195 bp
ATGTGGGCGGCTCTCAACTACGGTGGCTCCACCGTTTTCCTAGAAGGAAGAGTGAGATTGGAAGGAAGTGTACCTGCGACGACGAACTTCAATGACGAAATCGAGCGGCGCAGCGGGAGACCCAGCATGAATCATATGAGTGAAGTGAAGACTACGGTTTTCAGATTCTGCTGGTATGCATGTAAAGGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

7.25

Weight (kDa)

8.8

Isoelectric Point (pI)

63.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 106
AciI CCGC 3 cut(s) 8, 106, 114
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 189
AvaII GGWCC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 3 cut(s) 9, 107, 112
BlsI GCNGC 3 cut(s) 10, 108, 113
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 28, 190
BpiI GAAGAC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
BseXI GCAGC 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 112
BspACI CCGC 3 cut(s) 8, 106, 114
BspLI GGNNCC 2 cut(s) 28, 190
BspMI ACCTGC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 23, 34, 157
Bst6I CTCTTC 1 cut(s) 43
BstHHI GCGC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 155
BveI ACCTGC 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 168
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 2 cut(s) 127, 180
CviJI RGCY 2 cut(s) 11, 27
CviKI_1 RGCY 2 cut(s) 11, 27
CviQI GTAC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 2 cut(s) 130, 183
FaiI YATR 5 cut(s) 128, 135, 137, 177, 181
FatI CATG 2 cut(s) 126, 179
FauI CCCGC 1 cut(s) 107
FauNDI CATATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 9, 107, 112
Fsp4HI GCNGC 3 cut(s) 9, 107, 112
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 110
GluI GCNGC 3 cut(s) 9, 107, 112
GsaI CCCAGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 130, 183
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 2 cut(s) 130, 165
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 2 cut(s) 82, 85
HpyAV CCTTC 2 cut(s) 38, 56
HpyCH4III ACNGT 3 cut(s) 23, 34, 157
HpyCH4V TGCA 1 cut(s) 179
Hsp92II CATG 2 cut(s) 130, 183
HspAI GCGC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 87, 136, 157
Lsp1109I GCAGC 1 cut(s) 123
MaeI CTAG 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 106
MboII GAAGA 2 cut(s) 60, 160
Mph1103I ATGCAT 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 114
NdeI CATATG 1 cut(s) 135
NlaIII CATG 2 cut(s) 130, 183
NlaIV GGNNCC 2 cut(s) 28, 190
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 183
PfeI GAWTC 2 cut(s) 130, 165
PkrI GCNGC 3 cut(s) 10, 108, 113
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 28, 190
PspPI GGNCC 1 cut(s) 189
PspPPI RGGWCCY 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 168
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 3 cut(s) 9, 107, 112
Sau96I GGNCC 1 cut(s) 189
SetI ASST 1 cut(s) 76
SgeI CNNG 7 cut(s) 53, 86, 115, 127, 135, 139, 184
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 138
SsiI CCGC 3 cut(s) 8, 106, 114
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 23, 34, 157
TaqI TCGA 1 cut(s) 102
TauI GCSGC 2 cut(s) 11, 109
TfiI GAWTC 2 cut(s) 130, 165
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 189
XceI RCATGY 1 cut(s) 183
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.