Rh2CG474500

glucan endo-1,3-beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007207
Physical Location & Seq
Reverse (-)
63980323 .. 63982353
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG474500.1

Sequence Viewer

Length: 741 bp
ATGGTGATGATGATTGGTGGAAGGTTCAACTATGGTATAATAGTATTCCTGATCCTATTGGGTCATTTCTTCTGTTCAGGTTTGAAGGTGAGAATTAAAGAACAAAGCCATGAACAGAAACAGCTACATATTACTACTTCAATTTCCACAACCCAGAAAGACATCACAACCCCAATAACCACAGTTCCTACAATAACTCCCACCACTCCCACTTCATTAACACCAATTATGAACCCTACTTCCACACCAGATTCAACCTCTCCAGTTACTACAAACCCCTTTTCTACTACCACAACATCATCCACTTCTGCAAGTTGGTGTGTTGCTAGCCCAAGTGCATCACAAATGGCATTACAAGTTGCCTTGGACTATGCTTGTGGCTATGGTGGCACTGATTGTTCAGAGATTCAGCTTGGTCGAAGTTGTTACAACCCAAATACTGTCCGAGACCATGCTTCTTTTGCATTCAATAACTTTTATCAGAAGAATCCAGTTCCAAATAGCTGCAATTTTGGTGGCACTGCTGTCATCACCAACAATGATCCAAGTACTGGGACATGTCAATATCCATCCACTAGCACAAGTTCATCGATTTTGAACACAACAAATTCAAGTGGCTCAACGGTTTTCGGTGCAGTGCCTTCTGGTCCTTCTACCTCTTCAGCAGCTGCTGCTGCAAGTTCACACAGCCTGCGAAACTTGTTCACTATGATGTCTCTGACGGTGGTTCTACTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

246

Amino Acids

25.87

Weight (kDa)

7.61

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 105 - 175 2.7e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 551
AclWI GGATC 2 cut(s) 46, 536
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 7 cut(s) 28, 85, 141, 255, 469, 598, 612
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 4 cut(s) 124, 412, 504, 668
AluI AGCT 4 cut(s) 124, 412, 504, 668
Alw26I GTCTC 2 cut(s) 441, 720
AlwI GGATC 2 cut(s) 46, 536
AlwNI CAGNNNCTG 2 cut(s) 668, 671
ApeKI GCWGC 5 cut(s) 504, 665, 668, 671, 674
ApoI RAATTY 1 cut(s) 607
AspS9I GGNCC 1 cut(s) 647
AsuHPI GGTGA 3 cut(s) 16, 100, 523
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 1 cut(s) 647
BbvI GCAGC 5 cut(s) 491, 655, 658, 661, 677
BccI CCATC 1 cut(s) 577
BcoDI GTCTC 2 cut(s) 441, 720
BfaI CTAG 2 cut(s) 327, 576
BisI GCNGC 5 cut(s) 505, 666, 669, 672, 675
BlsI GCNGC 5 cut(s) 506, 667, 670, 673, 676
BmcAI AGTACT 1 cut(s) 550
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 647
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 1 cut(s) 347
BmtI GCTAGC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 561
BpmI CTGGAG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 3 cut(s) 263, 491, 556
BseCI ATCGAT 1 cut(s) 590
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 299, 569
BseLI CCNNNNNNNGG 1 cut(s) 551
BseNI ACTGG 3 cut(s) 263, 491, 556
BseXI GCAGC 5 cut(s) 491, 655, 658, 661, 677
BsgI GTGCAG 1 cut(s) 654
BshVI ATCGAT 1 cut(s) 590
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 2 cut(s) 441, 720
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 1 cut(s) 464
Bso31I GGTCTC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 51, 541
BspDI ATCGAT 1 cut(s) 590
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 2 cut(s) 46, 536
BspTNI GGTCTC 1 cut(s) 441
BsrI ACTGG 3 cut(s) 263, 491, 556
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 2 cut(s) 51, 541
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 4 cut(s) 184, 442, 625, 724
Bst6I CTCTTC 1 cut(s) 664
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 2 cut(s) 328, 692
BstF5I GGATG 2 cut(s) 299, 569
BstKTI GATC 2 cut(s) 54, 544
BstMAI GTCTC 2 cut(s) 441, 720
BstMBI GATC 2 cut(s) 51, 541
BstMWI GCNNNNNNNGC 4 cut(s) 387, 461, 671, 674
BstNSI RCATGY 1 cut(s) 561
BstV1I GCAGC 5 cut(s) 491, 655, 658, 661, 677
Bsu15I ATCGAT 1 cut(s) 590
BsuTUI ATCGAT 1 cut(s) 590
BtsCI GGATG 2 cut(s) 299, 569
BtsI GCAGTG 2 cut(s) 519, 642
BtsIMutI CAGTG 3 cut(s) 390, 519, 642
Cac8I GCNNGC 2 cut(s) 328, 692
CaiI CAGNNNCTG 2 cut(s) 668, 671
Cfr13I GGNCC 1 cut(s) 647
ClaI ATCGAT 1 cut(s) 590
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 3 cut(s) 110, 452, 558
CviJI RGCY 9 cut(s) 108, 124, 330, 381, 412, 504, 618, 668, 690
CviKI_1 RGCY 9 cut(s) 108, 124, 330, 381, 412, 504, 618, 668, 690
CviQI GTAC 1 cut(s) 549
DpnI GATC 2 cut(s) 53, 543
DpnII GATC 2 cut(s) 51, 541
Eam1104I CTCTTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 645
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 3 cut(s) 113, 455, 561
FaqI GGGAC 1 cut(s) 568
FatI CATG 3 cut(s) 109, 451, 557
Fnu4HI GCNGC 5 cut(s) 505, 666, 669, 672, 675
FokI GGATG 2 cut(s) 286, 556
Fsp4HI GCNGC 5 cut(s) 505, 666, 669, 672, 675
FspBI CTAG 2 cut(s) 327, 576
GluI GCNGC 5 cut(s) 505, 666, 669, 672, 675
GsuI CTGGAG 1 cut(s) 246
Hin1II CATG 3 cut(s) 113, 455, 561
HinfI GANTC 3 cut(s) 251, 406, 487
HphI GGTGA 3 cut(s) 16, 100, 523
Hpy166II GTNNAC 2 cut(s) 683, 705
Hpy188I TCNGA 4 cut(s) 403, 446, 483, 720
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 2 cut(s) 683, 705
HpyAV CCTTC 4 cut(s) 15, 79, 651, 660
HpyCH4III ACNGT 4 cut(s) 184, 442, 625, 724
HpyCH4V TGCA 6 cut(s) 311, 338, 464, 507, 635, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 387, 461, 671, 674
Hsp92II CATG 3 cut(s) 113, 455, 561
Kzo9I GATC 2 cut(s) 51, 541
LpnPI CCDG 9 cut(s) 62, 63, 167, 261, 276, 504, 537, 630, 704
Lsp1109I GCAGC 5 cut(s) 491, 655, 658, 661, 677
LweI GCATC 1 cut(s) 347
MaeI CTAG 2 cut(s) 327, 576
MaeIII GTNAC 2 cut(s) 265, 425
MalI GATC 2 cut(s) 53, 543
MboI GATC 2 cut(s) 51, 541
MboII GAAGA 3 cut(s) 61, 496, 651
MluCI AATT 5 cut(s) 93, 141, 225, 508, 607
MnlI CCTC 2 cut(s) 268, 667
MseI TTAA 3 cut(s) 96, 218, 739
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 668
Mva1269I GAATGC 1 cut(s) 464
MwoI GCNNNNNNNGC 4 cut(s) 387, 461, 671, 674
NdeII GATC 2 cut(s) 51, 541
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 113, 455, 561
NspI RCATGY 1 cut(s) 561
PciI ACATGT 1 cut(s) 557
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 3 cut(s) 251, 406, 487
PflMI CCANNNNNTGG 1 cut(s) 551
PkrI GCNGC 5 cut(s) 506, 667, 670, 673, 676
PscI ACATGT 1 cut(s) 557
PspPI GGNCC 1 cut(s) 647
PstNI CAGNNNCTG 2 cut(s) 668, 671
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 3 cut(s) 96, 218, 739
SatI GCNGC 5 cut(s) 505, 666, 669, 672, 675
Sau3AI GATC 2 cut(s) 51, 541
Sau96I GGNCC 1 cut(s) 647
ScaI AGTACT 1 cut(s) 550
SetI ASST 9 cut(s) 26, 82, 90, 126, 260, 414, 506, 659, 670
SfaNI GCATC 1 cut(s) 347
SinI GGWCC 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 710
Sse9I AATT 5 cut(s) 93, 141, 225, 508, 607
SspMI CTAG 2 cut(s) 327, 576
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 4 cut(s) 184, 442, 625, 724
TaqI TCGA 2 cut(s) 418, 590
TasI AATT 5 cut(s) 93, 141, 225, 508, 607
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 3 cut(s) 251, 406, 487
Tru1I TTAA 3 cut(s) 96, 218, 739
Tru9I TTAA 3 cut(s) 96, 218, 739
TscAI CASTG 3 cut(s) 397, 526, 642
TseI GCWGC 5 cut(s) 504, 665, 668, 671, 674
TspDTI ATGAA 4 cut(s) 126, 204, 245, 576
TspRI CASTG 3 cut(s) 397, 526, 642
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 1 cut(s) 607
XceI RCATGY 1 cut(s) 561
XspI CTAG 2 cut(s) 327, 576
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.