Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007207

Physical Location & Seq

Genomic Coordinates Forward (+)

10860469 .. 10862832

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGTGGAAGGTTTATTTATCCTGTAATTCTAGTCTCCTGCTTGTTCCTCCTGTTGGGTAATTTCTTCTGTTCAGGTTTGAAGGTGACAAAAAAGGAAAAGAACATTGGACACGGCAAAGAACAAGACCAAGAAAATAAAGGGCCGAAATTCCCTAAAACCCTAATTTCCACCACCCAAAGAGACATCACTACTCCAATAACAACAGTCCCTACAATAACTCCCACAAATCCCACTTCATCAACACCAATTGTGAACCCTAATTCCAATCCAGCTGATTCAACATTTCCTGTCACAACAACGCCTAGCATGACCCCATATACTGCAACAACACCATCACCACCTGCATCCACTGGTTCAAGTTGGTGTGTTGCTAGCCAAAGTGCATCACAAATGGCATTACAAGTTGCTTTGGACTATGCTTGTGGCTATGGTGGCACTGATTGCTCAGAGATTCAGCCAGGACGAAGCTGTTATAATCCAAGCAATGTCCGGGATCACGCTTCTTTCGCATTCAATAACTATTATCAGAAGAACCCAGTTCCAAATAGCTGCAACTTTGGTGGAACCGCTGTGATCACGAGCACTGACCCAAGTACTGGAACGTGTCAATATCCATCCACTAGCACAAGTTCATCAGTCTTGAACACAACAAATACGAGTGGCTCCACTGTGTTTGGTGCTGTCCCTTCTGGCCCTACTACCTCAGCAGCAATAGTAGCTGCAAACTCCTCACATGGCGTGCACAATTTGTTCATCGTGGCATGTTTTCTGGTATTAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

263

Amino Acids

27.41

Weight (kDa)

8.06

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30933 AT2G30933 AT2G30933
fragaria_vesca	FvH4_6g38290 FvH4_6g38290 FvH4_6g38290 FvH4_6g38290
malus_domestica	MD09G1151300.v1.1 MD17G1139000.v1.1
prunus_persica	Prupe.3G173500_v2.0.a1 Prupe.3G173500_v2.0.a1 Prupe.3G173500_v2.0.a1 Prupe.3G173500_v2.0.a1
pyrus_communis	pycom17g13200
rosa_chinensis	RchiOBHm_Chr2g0151601
rosa_laevigata	RLG00000020562
rosa_multiflora	Rmu_co8483005.1_g000001 Rmu_sc0005287.1_g000008
rosa_roxburghii	Rroxscaffold_2G00096330
rosa_rugosa	Rorug02G0427100
rosa_samantha	Rh2AG488000 Rh2BG500600 Rh2CG474500 Rh2DG511800
rosa_wichuraiana	Rw2G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	599
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	2 cut(s)	55, 599
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	82, 282, 360, 517, 646
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	4 cut(s)	275, 471, 552, 722
AluI	AGCT	4 cut(s)	275, 471, 552, 722
Alw21I	GWGCWC	2 cut(s)	587, 747
Alw26I	GTCTC	2 cut(s)	40, 177
Alw44I	GTGCAC	1 cut(s)	743
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	2 cut(s)	143, 694
ApaLI	GTGCAC	1 cut(s)	743
ApeKI	GCWGC	3 cut(s)	552, 710, 722
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	143, 695
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	97, 330
AsuNHI	GCTAGC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	747
BauI	CACGAG	1 cut(s)	580
Bbv12I	GWGCWC	2 cut(s)	587, 747
BbvCI	CCTCAGC	1 cut(s)	706
BbvI	GCAGC	3 cut(s)	539, 709, 722
BccI	CCATC	2 cut(s)	343, 625
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	40, 177
BfaI	CTAG	4 cut(s)	32, 306, 375, 624
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	3 cut(s)	553, 711, 723
BlsI	GCNGC	3 cut(s)	554, 712, 724
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	2 cut(s)	462, 494
BmgT120I	GGNCC	2 cut(s)	143, 695
BmiI	GGNNCC	2 cut(s)	568, 667
BmrFI	CCNGG	2 cut(s)	462, 494
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	356, 395
BmtI	GCTAGC	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	706
BpuMI	CCSGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 599
Bse1I	ACTGG	3 cut(s)	358, 539, 604
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	347, 617
BseLI	CCNNNNNNNGG	2 cut(s)	55, 599
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	462, 720
BseNI	ACTGG	3 cut(s)	358, 539, 604
BseRI	GAGGAG	1 cut(s)	721
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	3 cut(s)	539, 709, 722
BshFI	GGCC	2 cut(s)	145, 696
BsiHKAI	GWGCWC	2 cut(s)	587, 747
BsiSI	CCGG	1 cut(s)	493
BslFI	GGGAC	2 cut(s)	194, 671
BslI	CCNNNNNNNGG	2 cut(s)	55, 599
BsmAI	GTCTC	2 cut(s)	40, 177
BsmFI	GGGAC	2 cut(s)	194, 671
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	145, 696
Bsp1286I	GDGCHC	2 cut(s)	587, 747
Bsp143I	GATC	2 cut(s)	496, 576
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	2 cut(s)	145, 696
BspCNI	CTCAG	2 cut(s)	461, 719
BspLI	GGNNCC	2 cut(s)	568, 667
BspMI	ACCTGC	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	493
BsrI	ACTGG	3 cut(s)	358, 539, 604
BssMI	GATC	2 cut(s)	496, 576
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	208, 673
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	376, 743
BstDEI	CTNAG	2 cut(s)	448, 706
BstF5I	GGATG	2 cut(s)	347, 617
BstKTI	GATC	2 cut(s)	499, 579
BstMAI	GTCTC	2 cut(s)	40, 177
BstMBI	GATC	2 cut(s)	496, 576
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 444, 509, 719
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	460, 492
BstSLI	GKGCMC	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	539, 709, 722
BsuRI	GGCC	2 cut(s)	145, 696
BtsCI	GGATG	2 cut(s)	347, 617
BtsIMutI	CAGTG	4 cut(s)	351, 438, 585, 669
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	376, 743
Cfr13I	GGNCC	2 cut(s)	143, 695
Csp6I	GTAC	1 cut(s)	597
CspCI	CAANNNNNGTGG	4 cut(s)	544, 579, 658, 693
CviAII	CATG	3 cut(s)	310, 737, 765
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	2 cut(s)	448, 706
DpnI	GATC	2 cut(s)	498, 578
DpnII	GATC	2 cut(s)	496, 576
EcoRII	CCWGG	1 cut(s)	460
FaeI	CATG	3 cut(s)	313, 740, 768
FaiI	YATR	9 cut(s)	311, 319, 321, 420, 432, 477, 738, 766, 787
FaqI	GGGAC	2 cut(s)	194, 671
FatI	CATG	3 cut(s)	309, 736, 764
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	3 cut(s)	553, 711, 723
FokI	GGATG	2 cut(s)	334, 604
Fsp4HI	GCNGC	3 cut(s)	553, 711, 723
FspBI	CTAG	4 cut(s)	32, 306, 375, 624
GluI	GCNGC	3 cut(s)	553, 711, 723
HaeIII	GGCC	2 cut(s)	145, 696
HapII	CCGG	1 cut(s)	493
Hin1II	CATG	3 cut(s)	313, 740, 768
HinfI	GANTC	2 cut(s)	278, 454
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	2 cut(s)	97, 330
Hpy166II	GTNNAC	2 cut(s)	256, 745
Hpy188I	TCNGA	2 cut(s)	451, 531
Hpy188III	TCNNGA	2 cut(s)	580, 643
Hpy8I	GTNNAC	2 cut(s)	256, 745
HpyAV	CCTTC	3 cut(s)	3, 76, 699
HpyCH4III	ACNGT	2 cut(s)	208, 673
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	6 cut(s)	326, 347, 386, 555, 725, 745
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 444, 509, 719
HpyF3I	CTNAG	2 cut(s)	448, 706
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	3 cut(s)	313, 740, 768
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	2 cut(s)	496, 576
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	3 cut(s)	539, 709, 722
LweI	GCATC	2 cut(s)	356, 395
MaeI	CTAG	4 cut(s)	32, 306, 375, 624
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	85, 292
MalI	GATC	2 cut(s)	498, 578
MboI	GATC	2 cut(s)	496, 576
MboII	GAAGA	2 cut(s)	58, 544
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	587, 747
MluCI	AATT	7 cut(s)	27, 61, 149, 165, 249, 262, 748
MnlI	CCTC	3 cut(s)	59, 715, 742
MseI	TTAA	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	275, 572
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	2 cut(s)	462, 494
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	4 cut(s)	435, 444, 509, 719
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	2 cut(s)	496, 576
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	3 cut(s)	313, 740, 768
NlaIV	GGNNCC	2 cut(s)	568, 667
NmuCI	GTSAC	2 cut(s)	85, 292
NspI	RCATGY	1 cut(s)	768
PaqCI	CACCTGC	1 cut(s)	352
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	278, 454
PflMI	CCANNNNNTGG	1 cut(s)	599
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	3 cut(s)	554, 712, 724
PsiI	TTATAA	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	568, 667
PspPI	GGNCC	2 cut(s)	143, 695
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	779
SatI	GCNGC	3 cut(s)	553, 711, 723
Sau3AI	GATC	2 cut(s)	496, 576
Sau96I	GGNCC	2 cut(s)	143, 695
ScaI	AGTACT	1 cut(s)	598
ScrFI	CCNGG	2 cut(s)	462, 494
SduI	GDGCHC	2 cut(s)	587, 747
SfaNI	GCATC	2 cut(s)	356, 395
Sse9I	AATT	7 cut(s)	27, 61, 149, 165, 249, 262, 748
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	4 cut(s)	32, 306, 375, 624
StyD4I	CCNGG	2 cut(s)	460, 492
TaaI	ACNGT	2 cut(s)	208, 673
TaiI	ACGT	1 cut(s)	608
TasI	AATT	7 cut(s)	27, 61, 149, 165, 249, 262, 748
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	2 cut(s)	278, 454
Tru1I	TTAA	1 cut(s)	779
Tru9I	TTAA	1 cut(s)	779
TscAI	CASTG	4 cut(s)	358, 445, 592, 676
TseFI	GTSAC	2 cut(s)	85, 292
TseI	GCWGC	3 cut(s)	552, 710, 722
Tsp45I	GTSAC	2 cut(s)	85, 292
TspDTI	ATGAA	3 cut(s)	228, 624, 745
TspRI	CASTG	4 cut(s)	358, 445, 592, 676
Van91I	CCANNNNNTGG	1 cut(s)	599
VneI	GTGCAC	1 cut(s)	743
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	768
XspI	CTAG	4 cut(s)	32, 306, 375, 624
ZrmI	AGTACT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.