AT2G30942

Small subunit of serine palmitoyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015141
Physical Location & Seq
Forward (+)
13170779 .. 13172168
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30942.1

Sequence Viewer

Length: 171 bp
ATGAACTGGGTTCAACGAAAAATCTACCTTTACAACGTCACCTTCGGGCTTTACATGCTCGATTGGTGGGAACGATACCTATTCAATTCTTTAGTGTTAATCTTGATGTGGTTTATTCTGTACAATGGATCTCGTTACTTTTCCGAGCTTTGCAAGAGGCATCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT_ssu-like

Protein Analysis

56

Amino Acids

7.14

Weight (kDa)

9.3

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT_ssu-like PF11779 1 - 52 7.9e-24 Small subunit of serine palmitoyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06515 AT1G06515 AT2G30942
fragaria_vesca FvH4_3g38980
malus_domestica MD03G1065900.v1.1 MD11G1070700.v1.1 MD12G1007100.v1.1
prunus_persica Prupe.6G054600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070251 RchiOBHm_Chr7g0176991
rosa_rugosa Rorug05G0404400 Rorug05G0404500 Rorug05G0404600
rosa_samantha Rh7AG002200
rosa_wichuraiana Rw5G042900 Rw7G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 136
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 2 cut(s) 14, 85
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
AlwI GGATC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 128
BspHI TCATGA 1 cut(s) 167
BspPI GGATC 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 11
BssMI GATC 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 120
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
CciI TCATGA 1 cut(s) 167
Csp6I GTAC 1 cut(s) 121
CviAII CATG 2 cut(s) 55, 168
CviJI RGCY 2 cut(s) 49, 148
CviKI_1 RGCY 2 cut(s) 49, 148
CviQI GTAC 1 cut(s) 121
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
FaeI CATG 2 cut(s) 58, 171
FaiI YATR 2 cut(s) 56, 169
FatI CATG 2 cut(s) 54, 167
Hin1II CATG 2 cut(s) 58, 171
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 103, 168
HpyAV CCTTC 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 58, 171
Kzo9I GATC 1 cut(s) 128
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 37, 134
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MflI RGATCY 1 cut(s) 128
MluCI AATT 1 cut(s) 85
MnlI CCTC 1 cut(s) 150
MseI TTAA 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 1 cut(s) 128
NlaIII CATG 2 cut(s) 58, 171
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 1 cut(s) 58
PagI TCATGA 1 cut(s) 167
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 1 cut(s) 128
SetI ASST 5 cut(s) 30, 39, 44, 81, 150
SgeI CNNG 8 cut(s) 19, 58, 67, 71, 115, 144, 157, 166
Sse9I AATT 1 cut(s) 85
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 85
TatI WGTACW 1 cut(s) 120
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 17, 156
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.