Rh7AG002200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015141
Physical Location & Seq
Forward (+)
205524 .. 208182
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG002200.1

Sequence Viewer

Length: 552 bp
ATGCATCTCGTAGAAATGCTTGAGGCAGAATGTCGTCTCGAGAGAAGGGAGTCAAGCTATATATTTGAAGAAGATACGTTGGTCCTGGTGTTGATGTGGTTCATCTTTTACAATAGCTCGCGCTGGATAAGAGGGGTGCTTTTGGACTTGGATATTTTTGCCTTGCTGAGTTCTTTGCCAGCATCTATGGTGAGATCTAGAGAAAGCATCGAACTGGAAGTGTTTCCTTCAACTTGCGAAAATGTTGACTTTGTGGGAGCAACTGTGGTTGTACTGCCCGTTTCTACACCATTTGCTCATATTGTATTACTCCTTGCTGTATACTCATTGAAGATTATGGTTCTTGGTTATGACCACAGCACTGTGGCTTGTCTTGTCATTTCTGAAAGCTTTGGTTGCTCTCCCCTCTACCAATTTTTGAACTGTTACATAAAAATAATAGAGAATTGTAAGCTAAGGTTCAGCACAGCAATTGTTAAAGGAGGTGGTTCCGAAAGACGAAAGAGGGGAAGAGACAAGGAGGGTTGCCGTCTTGCTGATGCCGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.71

Weight (kDa)

5.95

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06515 AT1G06515 AT2G30942
fragaria_vesca FvH4_3g38980
malus_domestica MD03G1065900.v1.1 MD11G1070700.v1.1 MD12G1007100.v1.1
prunus_persica Prupe.6G054600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070251 RchiOBHm_Chr7g0176991
rosa_rugosa Rorug05G0404400 Rorug05G0404500 Rorug05G0404600
rosa_samantha Rh7AG002200
rosa_wichuraiana Rw5G042900 Rw7G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 121
AfaI GTAC 1 cut(s) 273
AgsI TTSAA 4 cut(s) 68, 231, 331, 421
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 4 cut(s) 57, 117, 390, 454
AluI AGCT 4 cut(s) 57, 117, 390, 454
Alw26I GTCTC 2 cut(s) 41, 507
Ama87I CYCGRG 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 41, 507
BfaI CTAG 1 cut(s) 198
BglII AGATCT 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 4 cut(s) 13, 191, 216, 529
Bpu10I CCTNAGC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 543
BsmAI GTCTC 2 cut(s) 41, 507
BsmBI CGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 542
BssMI GATC 1 cut(s) 194
BssNAI GTATAC 1 cut(s) 322
Bst1107I GTATAC 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 265, 364, 425
Bst6I CTCTTC 1 cut(s) 505
BstC8I GCNNGC 3 cut(s) 119, 180, 544
BstDEI CTNAG 2 cut(s) 167, 455
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 2 cut(s) 41, 507
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BstZ17I GTATAC 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 3 cut(s) 119, 180, 544
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 272
CviJI RGCY 5 cut(s) 57, 117, 368, 390, 454
CviKI_1 RGCY 5 cut(s) 57, 117, 368, 390, 454
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 2 cut(s) 167, 455
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 41
FaiI YATR 8 cut(s) 60, 62, 188, 300, 322, 338, 351, 431
FblI GTMKAC 1 cut(s) 321
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 122
HapII CCGG 1 cut(s) 543
HhaI GCGC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 543
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 247, 322
Hpy188I TCNGA 2 cut(s) 385, 493
Hpy188III TCNNGA 3 cut(s) 38, 40, 198
Hpy8I GTNNAC 2 cut(s) 247, 322
HpyAV CCTTC 2 cut(s) 39, 237
HpyCH4III ACNGT 3 cut(s) 265, 364, 425
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 2 cut(s) 167, 455
HpySE526I ACGT 1 cut(s) 77
HspAI GCGC 1 cut(s) 121
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 5 cut(s) 71, 98, 109, 192, 200
LweI GCATC 4 cut(s) 13, 191, 216, 529
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 425
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 4 cut(s) 80, 83, 343, 522
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 194
MluCI AATT 3 cut(s) 413, 445, 471
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 6 cut(s) 16, 125, 416, 476, 498, 514
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 477
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 396
NaeI GCCGGC 1 cut(s) 544
NdeII GATC 1 cut(s) 194
NgoMIV GCCGGC 1 cut(s) 542
NlaIV GGNNCC 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 222
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 477
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 86
SetI ASST 7 cut(s) 59, 80, 119, 392, 456, 461, 487
SfaNI GCATC 4 cut(s) 13, 191, 216, 529
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 20, 38
SmoI CTYRAG 2 cut(s) 20, 38
Sse9I AATT 3 cut(s) 413, 445, 471
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 265, 364, 425
TaiI ACGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 39, 210
TasI AATT 3 cut(s) 413, 445, 471
TatI WGTACW 1 cut(s) 271
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 91
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.