MD03G1065900.v1.1

Small subunit of serine palmitoyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015141
Physical Location & Seq
Reverse (-)
5257639 .. 5260501
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1065900.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGACGATGTGGGCTTCAAATTGGGCCGAACAAGTTTTTCTTTTGTTTTGACTCGGTCTTACTTGTTGCCATCTAAAAAATCTCTCTCTCTCTCTCTCTCTCCCCCTCCTCGTCTCCGGCCAGTTCCTCCGAACTCATTCTTTCGTTCTCTGAAAACGGTAAATTCTGGAGTTATGAATTGGGTTCAACGAAAGATCTATCTTTACAATGTGACATTTGGGCTCTATATGTTGGATTGGTGGGAGCGTTATATCTTCAATATTTTGGTCGTTGTGTTGCTGTGGTTCCTGTGTTACAATGGGTCACGATATTTAATGGAGTTCGGGAAGAGTGTCAGGCGTCTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT_ssu-like

Protein Analysis

117

Amino Acids

13.82

Weight (kDa)

10.33

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT_ssu-like PF11779 59 - 107 5.4e-22 Small subunit of serine palmitoyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06515 AT1G06515 AT2G30942
fragaria_vesca FvH4_3g38980
malus_domestica MD03G1065900.v1.1 MD11G1070700.v1.1 MD12G1007100.v1.1
prunus_persica Prupe.6G054600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070251 RchiOBHm_Chr7g0176991
rosa_rugosa Rorug05G0404400 Rorug05G0404500 Rorug05G0404600
rosa_samantha Rh7AG002200
rosa_wichuraiana Rw5G042900 Rw7G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 340
AgsI TTSAA 3 cut(s) 19, 188, 259
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 2 cut(s) 25, 119
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 225
BccI CCATC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 119
BglII AGATCT 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 99
BshFI GGCC 2 cut(s) 27, 121
BsiSI CCGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsnI GGCC 2 cut(s) 27, 121
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 195
BspANI GGCC 2 cut(s) 27, 121
BspLI GGNNCC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 340
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 2 cut(s) 27, 121
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 329
CviJI RGCY 4 cut(s) 15, 27, 121, 223
CviKI_1 RGCY 4 cut(s) 15, 27, 121, 223
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 119
FaiI YATR 5 cut(s) 176, 228, 230, 252, 346
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FriOI GRGCYC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 2 cut(s) 27, 121
HapII CCGG 1 cut(s) 118
HgaI GACGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 340
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 132, 153
Hpy188III TCNNGA 3 cut(s) 168, 306, 325
HpyCH4III ACNGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 340
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 131, 135, 153, 302, 322
MaeIII GTNAC 3 cut(s) 211, 293, 303
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 2 cut(s) 247, 340
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 3 cut(s) 20, 163, 178
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 3 cut(s) 117, 120, 138
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 1 cut(s) 314
MspI CCGG 1 cut(s) 118
NdeII GATC 1 cut(s) 195
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 2 cut(s) 211, 303
PdmI GAANNNNTTC 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 55
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 225
Sse9I AATT 3 cut(s) 20, 163, 178
SspI AATATT 1 cut(s) 262
TaaI ACNGT 1 cut(s) 160
TaqII GACCGA 1 cut(s) 45
TasI AATT 3 cut(s) 20, 163, 178
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 2 cut(s) 211, 303
Tsp45I GTSAC 2 cut(s) 211, 303
TspDTI ATGAA 1 cut(s) 191
Tth111I GACNNNGTC 1 cut(s) 55
XapI RAATTY 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.