MD11G1070700.v1.1

Small subunit of serine palmitoyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015141
Physical Location & Seq
Reverse (-)
6036296 .. 6039181
2886 bp
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UTR
Exon/CDS
Intron
MD11G1070700.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGGCCTAAAAGGCCTCATTGATGAATTGACAAAATGGGCTTTAAAGTGGGTCGAACAAGTTTTTCCTTTGTTTTGGTCAGAGTCAAACCAACTCGTTTTCGCTAGTTGCCATCTCAAATCTCTCTCTCTCTCTCTCAAAACGATTCATCGTCTCCGGCCAGCTCCGCTGAACTCACCGTGTCGTTCTCTGAAACCGGTTAATTCCGGAGTTATGAATTGGGTTCAACGAAAGATCTATCTTTACAATGTGACATTTGGGCTCTATATGTTGGATTGGTGGGAGCGTTATCTCTTCAATACTTTGGTCGTTGTGTTACTGTGGTTCTTGTGTTACAATGGCTCACGATATTTAATGGAGTTTGGGAAGAGTGTCAGGCATCTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT_ssu-like

Protein Analysis

130

Amino Acids

15.38

Weight (kDa)

9.67

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT_ssu-like PF11779 72 - 120 6.4e-22 Small subunit of serine palmitoyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06515 AT1G06515 AT2G30942
fragaria_vesca FvH4_3g38980
malus_domestica MD03G1065900.v1.1 MD11G1070700.v1.1 MD12G1007100.v1.1
prunus_persica Prupe.6G054600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070251 RchiOBHm_Chr7g0176991
rosa_rugosa Rorug05G0404400 Rorug05G0404500 Rorug05G0404600
rosa_samantha Rh7AG002200
rosa_wichuraiana Rw5G042900 Rw7G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 158
AgeI ACCGGT 1 cut(s) 196
AgsI TTSAA 2 cut(s) 227, 298
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 3 cut(s) 4, 13, 158
AsiGI ACCGGT 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 168
BanII GRGCYC 1 cut(s) 264
BccI CCATC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 12
BglII AGATCT 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 4
BsaWI WCCGGW 2 cut(s) 196, 206
Bse118I RCCGGY 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 206
BshFI GGCC 3 cut(s) 6, 15, 160
BshTI ACCGGT 1 cut(s) 196
BsiSI CCGG 3 cut(s) 157, 197, 207
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsnI GGCC 3 cut(s) 6, 15, 160
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 1 cut(s) 167
BspANI GGCC 3 cut(s) 6, 15, 160
BspEI TCCGGA 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 180, 321
Bst6I CTCTTC 2 cut(s) 299, 362
BstC8I GCNNGC 1 cut(s) 162
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 12, 166
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 3 cut(s) 6, 15, 160
Cac8I GCNNGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 196
CviJI RGCY 7 cut(s) 6, 15, 41, 160, 164, 262, 342
CviKI_1 RGCY 7 cut(s) 6, 15, 41, 160, 164, 262, 342
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraI TTTAAA 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 299, 362
EarI CTCTTC 2 cut(s) 299, 362
Eco147I AGGCCT 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 158
FaiI YATR 4 cut(s) 215, 267, 269, 385
FriOI GRGCYC 1 cut(s) 264
FspBI CTAG 1 cut(s) 105
HaeIII GGCC 3 cut(s) 6, 15, 160
HapII CCGG 3 cut(s) 157, 197, 207
HinfI GANTC 2 cut(s) 83, 145
HpaII CCGG 3 cut(s) 157, 197, 207
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 82, 192
Hpy188III TCNNGA 2 cut(s) 207, 345
HpyCH4III ACNGT 2 cut(s) 180, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 166
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 2 cut(s) 169, 283
LpnPI CCDG 5 cut(s) 170, 174, 210, 220, 361
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 250, 315, 332
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 2 cut(s) 286, 379
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 3 cut(s) 26, 202, 217
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 1 cut(s) 26
MroI TCCGGA 1 cut(s) 206
MseI TTAA 3 cut(s) 44, 201, 353
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 3 cut(s) 157, 197, 207
MwoI GCNNNNNNNGC 2 cut(s) 12, 166
NdeII GATC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 250
PceI AGGCCT 1 cut(s) 15
PfeI GAWTC 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 196
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 234
SaqAI TTAA 3 cut(s) 44, 201, 353
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 264
SetI ASST 1 cut(s) 166
SfiI GGCCNNNNNGGCC 1 cut(s) 12
Sse9I AATT 3 cut(s) 26, 202, 217
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 105
StuI AGGCCT 1 cut(s) 15
TaaI ACNGT 2 cut(s) 180, 321
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 26, 202, 217
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 44, 201, 353
Tru9I TTAA 3 cut(s) 44, 201, 353
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 39, 137, 230
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.