FvH4_3g38980

Small subunit of serine palmitoyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015141
Physical Location & Seq
Forward (+)
33227147 .. 33228676
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38980.t1

Sequence Viewer

Length: 279 bp
ATGAATTGGGTTCAACGTAAGATCTATCTTTACAATGTCACTTTTGGGCTCTATATGCTGGATTGGTGGGAGCGTTATCTTTTCAATACATTGGTCCTGGTGTTGATGTGGTTCATCTTTTACAATAGCTCCCGGTATCTGACAGAGTTTTGCAAGAGGTTCTCAACAGCTGAACAAACTGAAGAGCCTTCCGCTTCGTGTGCTGGAATTTTGAGTCAGCTAAAATCTAGAATTTACAGAGGTTGGACTGCCACAAGAGGCATCTATGGTGAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT_ssu-like

Protein Analysis

93

Amino Acids

11.12

Weight (kDa)

9.0

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT_ssu-like PF11779 1 - 51 3e-21 Small subunit of serine palmitoyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06515 AT1G06515 AT2G30942
fragaria_vesca FvH4_3g38980
malus_domestica MD03G1065900.v1.1 MD11G1070700.v1.1 MD12G1007100.v1.1
prunus_persica Prupe.6G054600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070251 RchiOBHm_Chr7g0176991
rosa_rugosa Rorug05G0404400 Rorug05G0404500 Rorug05G0404600
rosa_samantha Rh7AG002200
rosa_wichuraiana Rw5G042900 Rw7G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 207, 231
AcuI CTGAAG 1 cut(s) 201
AgsI TTSAA 2 cut(s) 14, 85
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 3 cut(s) 129, 170, 220
AluI AGCT 3 cut(s) 129, 170, 220
Alw26I GTCTC 1 cut(s) 266
ApoI RAATTY 2 cut(s) 207, 231
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 2 cut(s) 228, 277
BglII AGATCT 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 98, 133
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 98, 133
BmsI GCATC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
BseBI CCWGG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 266
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 177
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 55, 200
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 96, 131
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 94
CviJI RGCY 5 cut(s) 49, 129, 170, 187, 220
CviKI_1 RGCY 5 cut(s) 49, 129, 170, 187, 220
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 51
FaiI YATR 3 cut(s) 54, 56, 267
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 2 cut(s) 228, 277
HapII CCGG 1 cut(s) 133
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 200
HpySE526I ACGT 1 cut(s) 16
Kzo9I GATC 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 70, 134
LpnPI CCDG 5 cut(s) 44, 83, 110, 146, 189
LweI GCATC 1 cut(s) 270
MaeI CTAG 2 cut(s) 228, 277
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 194
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 4, 207, 231
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 3 cut(s) 150, 233, 251
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 2 cut(s) 98, 133
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 55, 200
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 177
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 98, 133
SduI GDGCHC 1 cut(s) 51
SetI ASST 7 cut(s) 19, 131, 161, 172, 222, 244, 278
SfaNI GCATC 1 cut(s) 270
SinI GGWCC 1 cut(s) 94
Sse9I AATT 3 cut(s) 4, 207, 231
SsiI CCGC 1 cut(s) 192
SspMI CTAG 2 cut(s) 228, 277
StyD4I CCNGG 2 cut(s) 96, 131
TaiI ACGT 1 cut(s) 19
TasI AATT 3 cut(s) 4, 207, 231
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 17, 103
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 2 cut(s) 207, 231
XbaI TCTAGA 1 cut(s) 227
XspI CTAG 2 cut(s) 228, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.