RchiOBHm_Chr5g0070251

Small subunit of serine palmitoyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015141
Physical Location & Seq
Forward (+)
76063300 .. 76066751
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34551

Sequence Viewer

Length: 186 bp
ATGAGTCCTGGAGCCATGAATTGGGTTCAACGTAAGATCTATCTGTACAATGTCACTTTTGGGCTCTATATGTTGGATTGGTGGGAGCGTTATCTTTTTAATACGTTGGTCCTGGTGTTAATGTGGTTCATCTGTTACAATAGCTCACGGTATTTAACAGAGTTTTGCAAGAGGCATCTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT_ssu-like

Protein Analysis

61

Amino Acids

7.71

Weight (kDa)

9.1

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT_ssu-like PF11779 6 - 56 9.9e-23 Small subunit of serine palmitoyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06515 AT1G06515 AT2G30942
fragaria_vesca FvH4_3g38980
malus_domestica MD03G1065900.v1.1 MD11G1070700.v1.1 MD12G1007100.v1.1
prunus_persica Prupe.6G054600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070251 RchiOBHm_Chr7g0176991
rosa_rugosa Rorug05G0404400 Rorug05G0404500 Rorug05G0404600
rosa_samantha Rh7AG002200
rosa_wichuraiana Rw5G042900 Rw7G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 21
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 2 cut(s) 7, 111
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 9, 113
BglII AGATCT 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 9, 113
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 9, 113
BpmI CTGGAG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseBI CCWGG 2 cut(s) 9, 113
BseLI CCNNNNNNNGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 45
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 9, 113
Bst4CI ACNGT 1 cut(s) 150
BstAUI TGTACA 1 cut(s) 45
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 2 cut(s) 9, 113
BstSCI CCNGG 2 cut(s) 7, 111
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 16
CviJI RGCY 3 cut(s) 14, 64, 144
CviKI_1 RGCY 3 cut(s) 14, 64, 144
CviQI GTAC 1 cut(s) 46
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 7, 111
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 1 cut(s) 19
FaiI YATR 4 cut(s) 17, 69, 71, 181
FatI CATG 1 cut(s) 15
FriOI GRGCYC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 30
Hin1II CATG 1 cut(s) 19
HinfI GANTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 2 cut(s) 31, 104
HpyCH4V TGCA 1 cut(s) 168
HpySE526I ACGT 2 cut(s) 31, 104
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 11, 85
LpnPI CCDG 3 cut(s) 21, 98, 125
MaeII ACGT 2 cut(s) 31, 104
MaeIII GTNAC 2 cut(s) 52, 134
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 1 cut(s) 165
MseI TTAA 3 cut(s) 99, 119, 155
MspR9I CCNGG 2 cut(s) 9, 113
MvaI CCWGG 2 cut(s) 9, 113
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 21
PfoI TCCNGGA 1 cut(s) 7
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 7, 111
PspGI CCWGG 2 cut(s) 7, 111
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 3 cut(s) 99, 119, 155
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 9, 113
SduI GDGCHC 1 cut(s) 66
SetI ASST 3 cut(s) 34, 107, 146
SgeI CNNG 7 cut(s) 20, 21, 28, 124, 125, 159, 181
SinI GGWCC 1 cut(s) 109
Sse9I AATT 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 7, 111
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 2 cut(s) 34, 107
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 45
Tru1I TTAA 3 cut(s) 99, 119, 155
Tru9I TTAA 3 cut(s) 99, 119, 155
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 32, 118
Van91I CCANNNNNTGG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.