Prupe.6G054600_v2.0.a1

Small subunit of serine palmitoyltransferase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
3831736 .. 3834435
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G054600.1

Sequence Viewer

Length: 246 bp
ATGAATTGGGTTCAACGAAAGATTTATCTTTACAATGTCACTTTTGGGCTCTATATGTTGGATTGGTGGGAGCGTTATCTCTTCAATACTTTGGTCGTTGTATTGATGTGGTTCATTTTTTACAATGGCTCACGATATGTAACGGAGTTTTGCAAGAGGCCAAGGCCAGTAGATAATGTGGAATTCGGCTGCCAAATAAATCAGTTTACAACTCTTGGTTTAGCCTCCGTTCCGTCGGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.78

Weight (kDa)

9.06

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015141)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 182
AgsI TTSAA 2 cut(s) 14, 85
AoxI GGCC 2 cut(s) 158, 164
ApeKI GCWGC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 182
BanII GRGCYC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 176
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 160, 166
BsnI GGCC 2 cut(s) 160, 166
Bsp1286I GDGCHC 1 cut(s) 51
BspANI GGCC 2 cut(s) 160, 166
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 160, 166
CviJI RGCY 6 cut(s) 49, 129, 160, 166, 189, 224
CviKI_1 RGCY 6 cut(s) 49, 129, 160, 166, 189, 224
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 161
FaiI YATR 3 cut(s) 54, 56, 138
Fnu4HI GCNGC 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 2 cut(s) 160, 166
Hpy166II GTNNAC 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 132, 237
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 153
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 1 cut(s) 180
Lsp1109I GCAGC 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 37, 139
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 2 cut(s) 4, 182
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 2 cut(s) 150, 235
NmuCI GTSAC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 191
SatI GCNGC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 51
SgeI CNNG 5 cut(s) 144, 166, 174, 179, 227
Sse9I AATT 2 cut(s) 4, 182
StyI CCWWGG 1 cut(s) 161
TasI AATT 2 cut(s) 4, 182
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 17, 103
TspGWI ACGGA 3 cut(s) 158, 217, 222
XapI RAATTY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.