AT2G31400

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010361
Physical Location & Seq
Reverse (-)
13386954 .. 13390854
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31400.2

Sequence Viewer

Length: 2757 bp
ATGGCGTCAACGCCGCCTCACTGGGTCACCACCACCAACAACCACCGTCCATGGCTTCCTCAGCGTCCTCGTCCCGGTCGCTCCGTTACCTCAGCTCCTCCCTCTTCTTCAGCCTCTGTTTCTTCAGCTCATCTTTCACAGACTACTCCAAATTTCTCTCCTTTGCAAACCCCCAAATCAGATTTCTCCGGTCGTCAATCTACCCGATTCGTCTCCCCCGCCACCAATAACCACCGTCAGACCAGGCAAAACCCAAACTACAACCACCGTCCGTATGGTGCCTCTTCTTCTCCTCGTGGCTCAGCTCCTCCGCCTTCATCTGTAGCTACTGTAGCTCCAGCTCAACTATCACAACCTCCTAACTTTTCGCCTCTCCAAACCCCAAAATCCGATCTTTCATCGGATTTTTCAGGTAGACGATCGACTAGATTCGTCTCCAAGATGCATTTCGGGCGGCAGAAGACGACAATGGCTACGAGACATAGCTCTGCTGCTGAAGATGCACTTCAAAACGCTATTGATTTCTCTGGAGACGATGAGATGTTTCATAGTCTAATGTTGAGCTTTGAGTCAAAGCTGTGTGGCTCTGACGACTGTACCTATATAATCCGTGAGTTAGGGAATCGTAATGAGTGCGATAAAGCTGTTGGCTTTTATGAGTTTGCGGTTAAACGAGAGAGGAGAAAGAACGAGCAGGGGAAGTTAGCTAGTGCTATGATAAGTACTCTTGGTAGATATGGTAAAGTAACTATTGCTAAGAGGATTTTCGAAACTGCTTTTGCTGGTGGATATGGAAACACGGTTTACGCCTTCTCGGCTTTGATCAGCGCTTATGGGAGAAGTGGGCTACATGAGGAAGCCATTAGTGTCTTCAACTCCATGAAAGAGTATGGCTTGAGGCCGAATTTGGTTACCTACAATGCTGTGATTGACGCTTGCGGTAAAGGCGGGATGGAGTTTAAGCAAGTAGCCAAGTTTTTCGATGAGATGCAGAGGAACGGTGTGCAGCCAGATAGAATAACTTTCAACTCGTTGCTTGCTGTTTGCAGTAGAGGAGGGTTGTGGGAAGCAGCAAGGAATCTGTTTGATGAGATGACGAATAGAAGGATTGAGCAAGATGTTTTTTCTTATAATACGCTTTTGGATGCAATTTGCAAAGGTGGGCAGATGGACCTTGCTTTCGAAATCCTTGCTCAGATGCCAGTTAAGAGAATCATGCCTAATGTTGTAAGTTATAGCACCGTTATTGATGGGTTTGCAAAAGCCGGAAGATTTGATGAAGCTCTTAACTTGTTTGGTGAAATGAGATATCTTGGTATTGCATTAGATAGAGTTTCTTACAATACATTGCTTTCAATCTACACTAAAGTTGGTAGATCTGAAGAAGCTTTGGATATTCTGAGAGAAATGGCATCTGTTGGGATTAAAAAGGATGTTGTGACTTATAATGCTCTTCTTGGAGGATATGGGAAACAAGGGAAATATGATGAAGTGAAGAAAGTTTTCACTGAGATGAAGCGAGAGCATGTGTTGCCTAACTTACTGACTTATTCAACTTTGATCGATGGGTACTCGAAGGGGGGTTTGTATAAAGAGGCAATGGAGATATTTAGGGAGTTTAAGAGCGCCGGATTAAGAGCTGATGTTGTTTTGTACAGTGCATTGATTGATGCATTGTGCAAGAATGGGTTGGTGGGTTCTGCTGTTTCTTTGATCGATGAGATGACAAAGGAAGGAATTAGTCCTAATGTTGTAACTTATAATTCCATAATCGATGCCTTTGGTCGTTCTGCAACTATGGACAGATCAGCCGATTATAGCAATGGTGGATCTTTGCCTTTCTCTTCTTCTGCTCTGAGTGCATTGACTGAAACAGAGGGTAATCGGGTAATACAGTTATTTGGGCAGTTAACAACTGAGAGTAACAACCGAACGACGAAAGATTGTGAGGAGGGTATGCAGGAGCTCTCCTGTATATTGGAAGTTTTCCGCAAAATGCATCAGCTGGAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGTCGGTGTAACTCATTTGAAGATGCATCAATGCTACTAGAGGAGCTCAGGCTGTTTGATAATAAGGTATATGGTGTTGTTCATGGACTTCTCATGGGCCAGAGAGAGAATGTATGGCTCCAAGCTCAGAGCTTATTTGACAAAGTAAATGAAATGGATGGTTCGACTGCTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGAAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGGCAAGTTTGGGAAAACGTGTGGTCTGATTCTTGCTTGGACTTACACCTCATGTCTTCTGGAGCTGCACGTGCAATGGTCCATGCGTGGCTACTAAACATACGCTCCATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAGTATATTGACTGGCTGGGGGAAACACAGCAAAGTGGTTGGAGACGGAGCACTAAGACGAGCGGTTGAAGTTCTTTTGAGGGGAATGGATGCACCATTCCACCTGTCAAAATGCAACATGGGACGGTTCACATCAAGCGGTTCGGTGGTAGCAACTTGGCTGCGTGAATCAGCCACACTGAAACTCTTAATCCTCCATGACCACATAACAACCGCCACAGCTACTACTACAACAATGAAATCAACAGACCAACAACAACGGAAACAGACGTCGTTTGCTTTACAGCCTCTTCTTTTGTAG

Protein Analysis

918

Amino Acids

101.62

Weight (kDa)

8.72

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 239 - 362 8.8e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 267 - 315 7.1e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 267 - 315 6.9e-13 PPR repeat family
PPR PF01535 270 - 299 9.1e-08 PPR repeat
PPR_long PF17177 285 - 400 5.2e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 302 - 350 4.4e-11 PPR repeat family
PPR_long PF17177 326 - 469 6.6e-12 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 340 - 386 6.1e-11 PPR repeat family
PPR_3 PF13812 361 - 417 2.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 372 - 400 1.8e-06 PPR repeat
PPR_2 PF13041 373 - 421 1.7e-14 PPR repeat family
PPR_long PF17177 391 - 508 1.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 404 - 436 3.1e-11 PPR repeat
PPR_2 PF13041 407 - 447 1.5e-09 PPR repeat family
TPR_24 PF23276 410 - 504 4.4e-06 Fungal tetratrico peptide repeats
PPR PF01535 410 - 440 1.2e-08 PPR repeat
PPR_3 PF13812 431 - 491 3.8e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 443 - 478 8.8e-06 PPR repeat family
PPR PF01535 445 - 475 1.5e-06 PPR repeat
PPR_3 PF13812 466 - 524 2.1e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 474 - 506 1.8e-06 PPR repeat
PPR_2 PF13041 477 - 526 1e-16 PPR repeat family
PPR PF01535 480 - 508 4.5e-08 PPR repeat
PPR_1 PF12854 510 - 539 3.6e-07 PPR repeat
PPR PF01535 516 - 545 1.5e-07 PPR repeat
TPR_24 PF23276 530 - 598 3.8e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 536 - 595 7.7e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 544 - 576 3.7e-09 PPR repeat
PPR_2 PF13041 548 - 595 1.4e-15 PPR repeat family
PPR PF01535 550 - 580 4.2e-07 PPR repeat
PPR_3 PF13812 657 - 685 8.8e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1131, 1446, 1761
AatII GACGTC 1 cut(s) 2729
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 2519
AccI GTMKAC 1 cut(s) 415
AclWI GGATC 1 cut(s) 1837
AcoI YGGCCR 1 cut(s) 2269
AcsI RAATTY 2 cut(s) 151, 904
AcuI CTGAAG 4 cut(s) 93, 108, 516, 1401
AcvI CACGTG 1 cut(s) 2384
AcyI GRCGYC 2 cut(s) 5, 2726
AfaI GTAC 4 cut(s) 598, 724, 1571, 1655
AfeI AGCGCT 1 cut(s) 829
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 2331
AgsI TTSAA 7 cut(s) 509, 874, 1027, 1356, 1554, 2075, 2525
AjnI CCWGG 1 cut(s) 242
AjuI GAANNNNNNNTTGG 4 cut(s) 167, 199, 431, 463
Alw21I GWGCWC 3 cut(s) 1968, 2103, 2509
Alw26I GTCTC 5 cut(s) 217, 439, 472, 525, 2493
AlwI GGATC 1 cut(s) 1837
AlwNI CAGNNNCTG 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 829
AoxI GGCC 3 cut(s) 899, 2152, 2269
ApeKI GCWGC 5 cut(s) 491, 1006, 1070, 2378, 2617
ApoI RAATTY 2 cut(s) 151, 904
ArsI GACNNNNNNTTYG 2 cut(s) 1163, 1195
Asp700I GAANNNNTTC 1 cut(s) 1502
AspLEI GCGC 2 cut(s) 830, 1628
AspS9I GGNCC 3 cut(s) 1171, 2152, 2392
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 19, 1310
AsuII TTCGAA 2 cut(s) 768, 1182
AvaII GGWCC 2 cut(s) 1171, 2392
BaeI ACNNNNGTAYC 2 cut(s) 580, 613
BalI TGGCCA 1 cut(s) 2271
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 2 cut(s) 1968, 2103
BauI CACGAG 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 2384
BbsI GAAGAC 3 cut(s) 467, 862, 2361
Bbv12I GWGCWC 3 cut(s) 1968, 2103, 2509
BbvCI CCTCAGC 2 cut(s) 60, 91
BbvI GCAGC 5 cut(s) 478, 1018, 1082, 2365, 2604
BccI CCATC 5 cut(s) 946, 1162, 1244, 1559, 2207
BcgI CGANNNNNNTGC 2 cut(s) 1172, 1206
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 1 cut(s) 822
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 5 cut(s) 217, 439, 472, 525, 2493
BfaI CTAG 4 cut(s) 426, 708, 2093, 2313
BfmI CTRYAG 2 cut(s) 321, 330
BfoI RGCGCY 2 cut(s) 831, 1629
BglI GCCNNNNNGGC 1 cut(s) 815
BglII AGATCT 2 cut(s) 1376, 2309
BisI GCNGC 7 cut(s) 14, 455, 492, 1007, 1071, 2379, 2618
BlpI GCTNAGC 1 cut(s) 301
BlsI GCNGC 7 cut(s) 15, 456, 493, 1008, 1072, 2380, 2619
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 2 cut(s) 75, 244
Bme18I GGWCC 2 cut(s) 1171, 2392
BmgT120I GGNCC 3 cut(s) 1171, 2152, 2392
BmiI GGNNCC 2 cut(s) 280, 2174
BmrFI CCNGG 2 cut(s) 75, 244
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 3 cut(s) 467, 862, 2361
BpmI CTGGAG 3 cut(s) 321, 549, 2394
Bpu10I CCTNAGC 3 cut(s) 60, 91, 2102
Bpu1102I GCTNAGC 1 cut(s) 301
Bpu14I TTCGAA 2 cut(s) 768, 1182
BpuEI CTTGAG 3 cut(s) 916, 2321, 2476
BpuMI CCSGG 1 cut(s) 75
Bsa29I ATCGAT 3 cut(s) 1563, 1716, 1773
BsaAI YACGTR 1 cut(s) 2384
BsaHI GRCGYC 2 cut(s) 5, 2726
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 6 cut(s) 79, 109, 319, 349, 2402, 2432
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 26, 1202, 2295, 2473
Bse3DI GCAATG 4 cut(s) 1346, 1605, 1828, 2394
BseBI CCWGG 1 cut(s) 244
BseCI ATCGAT 3 cut(s) 1563, 1716, 1773
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 5 cut(s) 957, 1150, 1438, 2218, 2551
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 4 cut(s) 1346, 1605, 1828, 2394
BseNI ACTGG 4 cut(s) 26, 1202, 2295, 2473
BseRI GAGGAG 7 cut(s) 87, 282, 297, 694, 1068, 1964, 2111
BseXI GCAGC 5 cut(s) 478, 1018, 1082, 2365, 2604
BseYI CCCAGC 1 cut(s) 2472
BsgI GTGCAG 3 cut(s) 1025, 2304, 2364
Bsh1285I CGRYCG 3 cut(s) 79, 193, 422
BshFI GGCC 3 cut(s) 901, 2154, 2271
BshNI GGYRCC 1 cut(s) 278
BshVI ATCGAT 3 cut(s) 1563, 1716, 1773
BsiEI CGRYCG 3 cut(s) 79, 193, 422
BsiHKAI GWGCWC 3 cut(s) 1968, 2103, 2509
BsiSI CCGG 4 cut(s) 75, 189, 1266, 1629
BslFI GGGAC 2 cut(s) 57, 2592
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 5 cut(s) 217, 439, 472, 525, 2493
BsmBI CGTCTC 4 cut(s) 217, 439, 525, 2493
BsmFI GGGAC 2 cut(s) 57, 2592
BsmI GAATGC 1 cut(s) 2053
BsnI GGCC 3 cut(s) 901, 2154, 2271
Bsp119I TTCGAA 2 cut(s) 768, 1182
Bsp1286I GDGCHC 3 cut(s) 1968, 2103, 2509
Bsp1407I TGTACA 1 cut(s) 1653
Bsp143I GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
Bsp1720I GCTNAGC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 50
BspANI GGCC 3 cut(s) 901, 2154, 2271
BspDI ATCGAT 3 cut(s) 1563, 1716, 1773
BspHI TCATGA 1 cut(s) 2437
BspLI GGNNCC 2 cut(s) 280, 2174
BspPI GGATC 1 cut(s) 1837
BspQI GCTCTTC 1 cut(s) 1458
BspT104I TTCGAA 2 cut(s) 768, 1182
BspT107I GGYRCC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 2519
BsrDI GCAATG 4 cut(s) 1346, 1605, 1828, 2394
BsrGI TGTACA 1 cut(s) 1653
BsrI ACTGG 4 cut(s) 26, 1202, 2295, 2473
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
BssNI GRCGYC 2 cut(s) 5, 2726
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 244
Bst6I CTCTTC 5 cut(s) 109, 289, 1458, 1849, 2751
BstACI GRCGYC 2 cut(s) 5, 2726
BstAPI GCANNNNNTGC 1 cut(s) 1531
BstAUI TGTACA 1 cut(s) 1653
BstBAI YACGTR 1 cut(s) 2384
BstBI TTCGAA 2 cut(s) 768, 1182
BstC8I GCNNGC 3 cut(s) 937, 1038, 2053
BstDSI CCRYGG 1 cut(s) 50
BstEII GGTNACC 2 cut(s) 25, 910
BstF5I GGATG 5 cut(s) 957, 1150, 1438, 2218, 2551
BstH2I RGCGCY 2 cut(s) 831, 1629
BstHHI GCGC 2 cut(s) 830, 1628
BstKTI GATC 9 cut(s) 394, 422, 825, 1379, 1563, 1716, 1808, 1832, 2312
BstMAI GTCTC 5 cut(s) 217, 439, 472, 525, 2493
BstMBI GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
BstMCI CGRYCG 3 cut(s) 79, 193, 422
BstMWI GCNNNNNNNGC 9 cut(s) 61, 332, 451, 500, 815, 945, 1531, 1859, 2384
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 2 cut(s) 1529, 2257
BstPI GGTNACC 2 cut(s) 25, 910
BstSCI CCNGG 2 cut(s) 73, 242
BstSFI CTRYAG 2 cut(s) 321, 330
BstV1I GCAGC 5 cut(s) 478, 1018, 1082, 2365, 2604
BstV2I GAAGAC 3 cut(s) 467, 862, 2361
BstX2I RGATCY 3 cut(s) 1376, 1829, 2309
BstYI RGATCY 3 cut(s) 1376, 1829, 2309
Bsu15I ATCGAT 3 cut(s) 1563, 1716, 1773
BsuRI GGCC 3 cut(s) 901, 2154, 2271
BsuTUI ATCGAT 3 cut(s) 1563, 1716, 1773
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 5 cut(s) 957, 1150, 1438, 2218, 2551
BtsIMutI CAGTG 4 cut(s) 19, 1506, 1663, 2633
Cac8I GCNNGC 3 cut(s) 937, 1038, 2053
CaiI CAGNNNCTG 1 cut(s) 116
CciI TCATGA 1 cut(s) 2437
CfoI GCGC 2 cut(s) 830, 1628
Cfr13I GGNCC 3 cut(s) 1171, 2152, 2392
ClaI ATCGAT 3 cut(s) 1563, 1716, 1773
CseI GACGC 2 cut(s) 53, 941
Csp6I GTAC 4 cut(s) 597, 723, 1570, 1654
CviQI GTAC 4 cut(s) 597, 723, 1570, 1654
DpnI GATC 9 cut(s) 393, 421, 824, 1378, 1562, 1715, 1807, 1831, 2311
DpnII GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
EaeI YGGCCR 1 cut(s) 2269
Eam1104I CTCTTC 5 cut(s) 109, 289, 1458, 1849, 2751
EarI CTCTTC 5 cut(s) 109, 289, 1458, 1849, 2751
EciI GGCGGA 1 cut(s) 300
Ecl136II GAGCTC 2 cut(s) 1966, 2101
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 2 cut(s) 1968, 2103
Eco32I GATATC 1 cut(s) 1310
Eco47I GGWCC 2 cut(s) 1171, 2392
Eco47III AGCGCT 1 cut(s) 829
Eco53kI GAGCTC 2 cut(s) 1966, 2101
Eco57I CTGAAG 4 cut(s) 93, 108, 516, 1401
Eco72I CACGTG 1 cut(s) 2384
Eco91I GGTNACC 2 cut(s) 25, 910
EcoICRI GAGCTC 2 cut(s) 1966, 2101
EcoO65I GGTNACC 2 cut(s) 25, 910
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 1310
EcoT14I CCWWGG 1 cut(s) 50
EcoT22I ATGCAT 4 cut(s) 447, 1675, 2001, 2083
EcoT38I GRGCYC 2 cut(s) 1968, 2103
ErhI CCWWGG 1 cut(s) 50
Esp3I CGTCTC 4 cut(s) 217, 439, 525, 2493
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 2 cut(s) 57, 2592
FauI CCCGC 2 cut(s) 226, 941
FbaI TGATCA 1 cut(s) 822
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 7 cut(s) 14, 455, 492, 1007, 1071, 2379, 2618
FokI GGATG 5 cut(s) 964, 1157, 1445, 2225, 2558
FriOI GRGCYC 2 cut(s) 1968, 2103
Fsp4HI GCNGC 7 cut(s) 14, 455, 492, 1007, 1071, 2379, 2618
FspBI CTAG 4 cut(s) 426, 708, 2093, 2313
GlaI GCGC 2 cut(s) 829, 1627
GluI GCNGC 7 cut(s) 14, 455, 492, 1007, 1071, 2379, 2618
GsaI CCCAGC 1 cut(s) 2476
GsuI CTGGAG 3 cut(s) 321, 549, 2394
HaeII RGCGCY 2 cut(s) 831, 1629
HaeIII GGCC 3 cut(s) 901, 2154, 2271
HapII CCGG 4 cut(s) 75, 189, 1266, 1629
HgaI GACGC 2 cut(s) 53, 941
HhaI GCGC 2 cut(s) 830, 1628
Hin1I GRCGYC 2 cut(s) 5, 2726
Hin6I GCGC 2 cut(s) 828, 1626
HinP1I GCGC 2 cut(s) 828, 1626
HincII GTYRAC 2 cut(s) 9, 1911
HindII GTYRAC 2 cut(s) 9, 1911
HindIII AAGCTT 1 cut(s) 1386
HinfI GANTC 9 cut(s) 207, 429, 569, 622, 1078, 1212, 2041, 2342, 2624
HpaI GTTAAC 1 cut(s) 1911
HpaII CCGG 4 cut(s) 75, 189, 1266, 1629
HphI GGTGA 2 cut(s) 19, 1310
Hpy166II GTNNAC 5 cut(s) 9, 416, 805, 1911, 2586
Hpy188III TCNNGA 4 cut(s) 528, 2373, 2438, 2455
Hpy8I GTNNAC 5 cut(s) 9, 416, 805, 1911, 2586
Hpy99I CGWCG 2 cut(s) 1939, 2731
HpyAV CCTTC 7 cut(s) 324, 820, 1098, 1570, 1727, 2242, 2426
HpyCH4IV ACGT 3 cut(s) 2331, 2383, 2726
HpyF10VI GCNNNNNNNGC 9 cut(s) 61, 332, 451, 500, 815, 945, 1531, 1859, 2384
HpySE526I ACGT 3 cut(s) 2331, 2383, 2726
Hsp92I GRCGYC 2 cut(s) 5, 2726
HspAI GCGC 2 cut(s) 828, 1626
Ksp22I TGATCA 1 cut(s) 822
KspAI GTTAAC 1 cut(s) 1911
Kzo9I GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
LguI GCTCTTC 1 cut(s) 1458
Lsp1109I GCAGC 5 cut(s) 478, 1018, 1082, 2365, 2604
MaeI CTAG 4 cut(s) 426, 708, 2093, 2313
MaeII ACGT 3 cut(s) 2331, 2383, 2726
MalI GATC 9 cut(s) 393, 421, 824, 1378, 1562, 1715, 1807, 1831, 2311
MbiI CCGCTC 1 cut(s) 2519
MboI GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
MflI RGATCY 3 cut(s) 1376, 1829, 2309
MhlI GDGCHC 3 cut(s) 1968, 2103, 2509
MlsI TGGCCA 1 cut(s) 2271
MluCI AATT 6 cut(s) 151, 904, 1149, 1737, 1762, 2010
MluNI TGGCCA 1 cut(s) 2271
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 2476
Mox20I TGGCCA 1 cut(s) 2271
Mph1103I ATGCAT 4 cut(s) 447, 1675, 2001, 2083
MroXI GAANNNNTTC 1 cut(s) 1502
MscI TGGCCA 1 cut(s) 2271
MslI CAYNNNNRTG 1 cut(s) 1511
Msp20I TGGCCA 1 cut(s) 2271
MspA1I CMGCKG 1 cut(s) 2005
MspI CCGG 4 cut(s) 75, 189, 1266, 1629
MspR9I CCNGG 2 cut(s) 75, 244
Mva1269I GAATGC 1 cut(s) 2053
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 9 cut(s) 61, 332, 451, 500, 815, 945, 1531, 1859, 2384
NciI CCSGG 1 cut(s) 75
NcoI CCATGG 1 cut(s) 50
NdeII GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
NlaIV GGNNCC 2 cut(s) 280, 2174
NmeAIII GCCGAG 1 cut(s) 794
NmuCI GTSAC 2 cut(s) 25, 1438
NsiI ATGCAT 4 cut(s) 447, 1675, 2001, 2083
NspI RCATGY 2 cut(s) 1529, 2257
NspV TTCGAA 2 cut(s) 768, 1182
PagI TCATGA 1 cut(s) 2437
PciSI GCTCTTC 1 cut(s) 1458
PctI GAATGC 1 cut(s) 2053
PdmI GAANNNNTTC 1 cut(s) 1502
PfeI GAWTC 8 cut(s) 207, 429, 622, 1078, 1212, 2041, 2342, 2624
PkrI GCNGC 7 cut(s) 15, 456, 493, 1008, 1072, 2380, 2619
Ple19I CGATCG 1 cut(s) 422
PleI GAGTC 1 cut(s) 577
PmaCI CACGTG 1 cut(s) 2384
PmlI CACGTG 1 cut(s) 2384
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 2384
PsiI TTATAA 3 cut(s) 1131, 1446, 1761
Psp124BI GAGCTC 2 cut(s) 1968, 2103
Psp6I CCWGG 1 cut(s) 242
PspCI CACGTG 1 cut(s) 2384
PspEI GGTNACC 2 cut(s) 25, 910
PspFI CCCAGC 1 cut(s) 2472
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 280, 2174
PspPI GGNCC 3 cut(s) 1171, 2152, 2392
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 3 cut(s) 1376, 1829, 2309
PvuI CGATCG 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 2005
RsaI GTAC 4 cut(s) 598, 724, 1571, 1655
RsaNI GTAC 4 cut(s) 597, 723, 1570, 1654
RseI CAYNNNNRTG 1 cut(s) 1511
SacI GAGCTC 2 cut(s) 1968, 2103
SapI GCTCTTC 1 cut(s) 1458
SatI GCNGC 7 cut(s) 14, 455, 492, 1007, 1071, 2379, 2618
Sau3AI GATC 9 cut(s) 391, 419, 822, 1376, 1560, 1713, 1805, 1829, 2309
Sau96I GGNCC 3 cut(s) 1171, 2152, 2392
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 2 cut(s) 75, 244
SduI GDGCHC 3 cut(s) 1968, 2103, 2509
SfcI CTRYAG 2 cut(s) 321, 330
SfuI TTCGAA 2 cut(s) 768, 1182
SinI GGWCC 2 cut(s) 1171, 2392
SmiMI CAYNNNNRTG 1 cut(s) 1511
SmlI CTYRAG 3 cut(s) 895, 2300, 2455
SmoI CTYRAG 3 cut(s) 895, 2300, 2455
Sse9I AATT 6 cut(s) 151, 904, 1149, 1737, 1762, 2010
SspMI CTAG 4 cut(s) 426, 708, 2093, 2313
SstI GAGCTC 2 cut(s) 1968, 2103
StyD4I CCNGG 2 cut(s) 73, 242
StyI CCWWGG 1 cut(s) 50
TaiI ACGT 3 cut(s) 2334, 2386, 2729
TaqI TCGA 9 cut(s) 422, 768, 981, 1182, 1563, 1574, 1716, 1773, 2219
TasI AATT 6 cut(s) 151, 904, 1149, 1737, 1762, 2010
TatI WGTACW 2 cut(s) 722, 1653
TauI GCSGC 2 cut(s) 16, 457
TfiI GAWTC 8 cut(s) 207, 429, 622, 1078, 1212, 2041, 2342, 2624
TscAI CASTG 4 cut(s) 26, 1513, 1663, 2640
TseFI GTSAC 2 cut(s) 25, 1438
TseI GCWGC 5 cut(s) 491, 1006, 1070, 2378, 2617
Tsp45I GTSAC 2 cut(s) 25, 1438
TspGWI ACGGA 5 cut(s) 73, 261, 599, 2517, 2731
TspRI CASTG 4 cut(s) 26, 1513, 1663, 2640
VpaK11BI GGWCC 2 cut(s) 1171, 2392
XapI RAATTY 2 cut(s) 151, 904
XceI RCATGY 2 cut(s) 1529, 2257
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 1502
XspI CTAG 4 cut(s) 426, 708, 2093, 2313
ZraI GACGTC 1 cut(s) 2727
ZrmI AGTACT 1 cut(s) 724
Zsp2I ATGCAT 4 cut(s) 447, 1675, 2001, 2083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.