Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010361

Physical Location & Seq

Genomic Coordinates Reverse (-)

25660646 .. 25662114

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTACAATGAGATGAAAGAAGAACGTGTATCACTAAACATATTAACGTATTCAACATTGATCAATGTTTTTTCAAAAGGTGGTTTGTATGCAGAGGCAATGAAGGTGTTTAAAGAGTTTAAGCACGCAGGGCTGAAGGTTGATGTTGTGCTTTATAGTGAACTTATCAATGCTTTGTGCAAAATGGACTTGTGGAATCTATGCTGCTCCGGAGGCATTGTGCTACAGACCGGATCTTCATCTTCAGTTTCTGGAGAGAGGGTCTTTGAGGTTCATGTGGGAGATAGGGAAGACAACAGATTTATGAAGATGTTTGGGCAACTTGCAGCTGAGAAAGCAGGTTATACAATAAAAGATAGGAAGGTTAGGCAAGAAATCTTGTGCATTTTGGGCGTCTTTCAGAAGATGCACGCGCTGGACATCAAACCGAATGTTGTCACATTTTCTGCCATTTTAAATGCGTGCAGGTACATCTCTTTATCTTTCGTACATGTTGCATGGAGGACCTATTTGCTTGAAGATCTGTTGAATGTTTCATTTTGTCTATGTGTATTTAAACAGAAACAAGGGGCACAACTGGTGGTGCTTGAAGGGAAACGACGAAACGTATGGGAGAGTGTGTGGTCCGATTCATGCTTAGATTTGCATTTAACGTCTCCTGGGGCTGCCCGGGCAATGGTCCATGCATGGTTGTTCAATATACGCGCTATAGTGTTTAAAGGCCAACAATTACCGAACCTGTTAAGGTTGTCGATCCCCTGCAGCATTCTAACAGGATGGGGGAAGCACATCAAAGTAGTAGGTGAGAGTACCTTAAGACGAGCTATTGAGGCCCTTCTTACTAGCATTGGTGCACCCTTTCACGTTGCCAAGTGTAACTTGGGTAGGTTTATATCAACGGGCTCTGTGGCTGCCGCCTGGCTAAAAGAATCTGGCACACTGGAGGTGCTCGTTCTTCACGATGACAGAATTCACCCAAAAGGTGCACATTTGGACCAAATCTCCAATTTTCGAGCGCTAGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

343

Amino Acids

38.23

Weight (kDa)

9.11

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	3 - 60	1.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	16 - 44	8e-06	PPR repeat
PPR_2	PF13041	19 - 61	1.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31400 AT2G31400
fragaria_vesca	FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040
malus_domestica	MD09G1284400.v1.1 MD17G1277600.v1.1
prunus_persica	Prupe.3G009900_v2.0.a1 Prupe.3G010400_v2.0.a1 Prupe.3G010400_v2.0.a1
pyrus_communis	pycom09g19230 pycom17g27520
rosa_chinensis	RchiOBHm_Chr3g0487361
rosa_laevigata	RLG00000023011
rosa_multiflora	Rmu_sc0001955.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394850
rosa_rugosa	Rorug03G0233500
rosa_samantha	Rh3DG313000
rosa_wichuraiana	Rw3G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	329, 456
AccII	CGCG	2 cut(s)	413, 705
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	1 cut(s)	915
AclWI	GGATC	2 cut(s)	241, 748
AcsI	RAATTY	1 cut(s)	969
AcuI	CTGAAG	2 cut(s)	155, 228
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	4 cut(s)	5, 470, 489, 811
AfeI	AGCGCT	1 cut(s)	1017
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflII	CTTAAG	1 cut(s)	814
AflIII	ACRYGT	2 cut(s)	25, 490
AgsI	TTSAA	6 cut(s)	54, 75, 518, 529, 590, 697
AjnI	CCWGG	2 cut(s)	658, 917
AluBI	AGCT	2 cut(s)	329, 824
AluI	AGCT	2 cut(s)	329, 824
Alw21I	GWGCWC	3 cut(s)	856, 951, 988
Alw26I	GTCTC	1 cut(s)	660
Alw44I	GTGCAC	2 cut(s)	852, 984
AlwI	GGATC	2 cut(s)	241, 748
AlwNI	CAGNNNCTG	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	669
Aor13HI	TCCGGA	1 cut(s)	209
Aor51HI	AGCGCT	1 cut(s)	1017
AoxI	GGCC	2 cut(s)	721, 831
ApaLI	GTGCAC	2 cut(s)	852, 984
ApeKI	GCWGC	5 cut(s)	204, 326, 665, 762, 911
ApoI	RAATTY	1 cut(s)	969
AspLEI	GCGC	3 cut(s)	415, 707, 1018
AspS9I	GGNCC	5 cut(s)	504, 624, 679, 832, 994
AsuC2I	CCSGG	2 cut(s)	670, 671
AsuHPI	GGTGA	2 cut(s)	815, 965
AsuNHI	GCTAGC	1 cut(s)	1018
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	4 cut(s)	504, 624, 679, 994
BaeGI	GKGCMC	3 cut(s)	574, 856, 988
BanII	GRGCYC	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	3 cut(s)	856, 951, 988
BbvI	GCAGC	5 cut(s)	191, 338, 652, 774, 898
BccI	CCATC	1 cut(s)	771
BciT130I	CCWGG	2 cut(s)	660, 919
BclI	TGATCA	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	670, 671
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	843, 1019
BfmI	CTRYAG	3 cut(s)	224, 708, 760
BfoI	RGCGCY	1 cut(s)	1019
BfrI	CTTAAG	1 cut(s)	814
BfuAI	ACCTGC	2 cut(s)	329, 456
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	6 cut(s)	205, 327, 666, 763, 912, 915
BlsI	GCNGC	6 cut(s)	206, 328, 667, 764, 913, 916
Bme1390I	CCNGG	4 cut(s)	660, 670, 671, 919
Bme18I	GGWCC	4 cut(s)	504, 624, 679, 994
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	5 cut(s)	504, 624, 679, 832, 994
BmrFI	CCNGG	4 cut(s)	660, 670, 671, 919
BmsI	GCATC	1 cut(s)	396
BmtI	GCTAGC	1 cut(s)	1022
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	273, 962
BpuMI	CCSGG	2 cut(s)	670, 671
BsaBI	GATNNNNATC	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	659, 669
BsaWI	WCCGGW	2 cut(s)	209, 230
BsaXI	ACNNNNNCTCC	8 cut(s)	204, 234, 246, 276, 605, 635, 986, 1016
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	2 cut(s)	582, 945
Bse3DI	GCAATG	2 cut(s)	105, 681
Bse8I	GATNNNNATC	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	660, 919
BseDI	CCNNGG	2 cut(s)	659, 669
BseGI	GGATG	1 cut(s)	782
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	2 cut(s)	105, 681
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	582, 945
BseSI	GKGCMC	3 cut(s)	574, 856, 988
BseXI	GCAGC	5 cut(s)	191, 338, 652, 774, 898
BsgI	GTGCAG	1 cut(s)	484
Bsh1236I	CGCG	2 cut(s)	413, 705
BshFI	GGCC	2 cut(s)	723, 833
BsiHKAI	GWGCWC	3 cut(s)	856, 951, 988
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	3 cut(s)	210, 231, 670
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	2 cut(s)	723, 833
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	5 cut(s)	574, 856, 905, 951, 988
Bsp13I	TCCGGA	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	60, 233, 520, 753
BspACI	CCGC	1 cut(s)	915
BspANI	GGCC	2 cut(s)	723, 833
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	209
BspFNI	CGCG	2 cut(s)	413, 705
BspMAI	CTGCAG	1 cut(s)	764
BspMI	ACCTGC	2 cut(s)	329, 456
BspOI	GCTAGC	1 cut(s)	1022
BspPI	GGATC	2 cut(s)	241, 748
BspTI	CTTAAG	1 cut(s)	814
BsrDI	GCAATG	2 cut(s)	105, 681
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	582, 945
BssECI	CCNNGG	2 cut(s)	659, 669
BssMI	GATC	4 cut(s)	60, 233, 520, 753
BssNI	GRCGYC	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	660, 919
BstACI	GRCGYC	1 cut(s)	393
BstAFI	CTTAAG	1 cut(s)	814
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	126, 411, 463, 1020
BstDEI	CTNAG	2 cut(s)	330, 637
BstF5I	GGATG	1 cut(s)	782
BstFNI	CGCG	2 cut(s)	413, 705
BstH2I	RGCGCY	1 cut(s)	1019
BstHHI	GCGC	3 cut(s)	415, 707, 1018
BstKTI	GATC	4 cut(s)	63, 236, 523, 756
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	4 cut(s)	60, 233, 520, 753
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 213, 335, 390, 671, 830
BstNI	CCWGG	2 cut(s)	660, 919
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	4 cut(s)	658, 668, 669, 917
BstSFI	CTRYAG	3 cut(s)	224, 708, 760
BstSLI	GKGCMC	3 cut(s)	574, 856, 988
BstUI	CGCG	2 cut(s)	413, 705
BstV1I	GCAGC	5 cut(s)	191, 338, 652, 774, 898
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	233, 520
BstYI	RGATCY	2 cut(s)	233, 520
BsuRI	GGCC	2 cut(s)	723, 833
BtsCI	GGATG	1 cut(s)	782
BtsIMutI	CAGTG	1 cut(s)	938
BveI	ACCTGC	2 cut(s)	329, 456
Cac8I	GCNNGC	4 cut(s)	126, 411, 463, 1020
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	3 cut(s)	415, 707, 1018
Cfr13I	GGNCC	5 cut(s)	504, 624, 679, 832, 994
Cfr9I	CCCGGG	1 cut(s)	669
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	4 cut(s)	4, 469, 488, 810
CviAII	CATG	6 cut(s)	275, 491, 498, 633, 683, 687
CviQI	GTAC	4 cut(s)	4, 469, 488, 810
DdeI	CTNAG	2 cut(s)	330, 637
DpnI	GATC	4 cut(s)	62, 235, 522, 755
DpnII	GATC	4 cut(s)	60, 233, 520, 753
DraI	TTTAAA	4 cut(s)	112, 456, 556, 718
Eco24I	GRGCYC	1 cut(s)	905
Eco47I	GGWCC	4 cut(s)	504, 624, 679, 994
Eco47III	AGCGCT	1 cut(s)	1017
Eco57I	CTGAAG	2 cut(s)	155, 228
Eco88I	CYCGRG	1 cut(s)	669
EcoO109I	RGGNCCY	2 cut(s)	504, 832
EcoRI	GAATTC	1 cut(s)	969
EcoRII	CCWGG	2 cut(s)	658, 917
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	905
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	6 cut(s)	278, 494, 501, 636, 686, 690
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FatI	CATG	6 cut(s)	274, 490, 497, 632, 682, 686
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	6 cut(s)	205, 327, 666, 763, 912, 915
FokI	GGATG	1 cut(s)	789
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	6 cut(s)	205, 327, 666, 763, 912, 915
FspBI	CTAG	2 cut(s)	843, 1019
GlaI	GCGC	3 cut(s)	414, 706, 1017
GluI	GCNGC	6 cut(s)	205, 327, 666, 763, 912, 915
GsuI	CTGGAG	2 cut(s)	273, 962
HaeII	RGCGCY	1 cut(s)	1019
HaeIII	GGCC	2 cut(s)	723, 833
HapII	CCGG	3 cut(s)	210, 231, 670
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	3 cut(s)	415, 707, 1018
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	278, 494, 501, 636, 686, 690
Hin6I	GCGC	3 cut(s)	413, 705, 1016
HinP1I	GCGC	3 cut(s)	413, 705, 1016
HinfI	GANTC	3 cut(s)	196, 629, 929
HpaII	CCGG	3 cut(s)	210, 231, 670
HphI	GGTGA	2 cut(s)	815, 965
Hpy166II	GTNNAC	3 cut(s)	161, 854, 986
Hpy188I	TCNGA	2 cut(s)	402, 628
Hpy188III	TCNNGA	3 cut(s)	210, 252, 959
Hpy8I	GTNNAC	3 cut(s)	161, 854, 986
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	5 cut(s)	97, 130, 355, 584, 845
HpyCH4IV	ACGT	5 cut(s)	25, 47, 606, 653, 864
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 213, 335, 390, 671, 830
HpyF3I	CTNAG	2 cut(s)	330, 637
HpySE526I	ACGT	5 cut(s)	25, 47, 606, 653, 864
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	6 cut(s)	278, 494, 501, 636, 686, 690
HspAI	GCGC	3 cut(s)	413, 705, 1016
Kpn2I	TCCGGA	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	60, 233, 520, 753
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	5 cut(s)	191, 338, 652, 774, 898
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	2 cut(s)	843, 1019
MaeII	ACGT	5 cut(s)	25, 47, 606, 653, 864
MaeIII	GTNAC	2 cut(s)	436, 875
MalI	GATC	4 cut(s)	62, 235, 522, 755
MboI	GATC	4 cut(s)	60, 233, 520, 753
MboII	GAAGA	8 cut(s)	32, 228, 234, 302, 319, 415, 530, 947
MflI	RGATCY	2 cut(s)	233, 520
MhlI	GDGCHC	5 cut(s)	574, 856, 905, 951, 988
MluCI	AATT	3 cut(s)	728, 969, 1006
MnlI	CCTC	7 cut(s)	88, 206, 252, 262, 495, 823, 937
Mph1103I	ATGCAT	1 cut(s)	688
MroI	TCCGGA	1 cut(s)	209
MseI	TTAA	9 cut(s)	44, 111, 120, 455, 555, 650, 717, 743, 815
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	814
MspI	CCGG	3 cut(s)	210, 231, 670
MspR9I	CCNGG	4 cut(s)	660, 670, 671, 919
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	660, 919
MvnI	CGCG	2 cut(s)	413, 705
MwoI	GCNNNNNNNGC	6 cut(s)	130, 213, 335, 390, 671, 830
NciI	CCSGG	2 cut(s)	670, 671
NdeII	GATC	4 cut(s)	60, 233, 520, 753
NheI	GCTAGC	1 cut(s)	1018
NlaIII	CATG	6 cut(s)	278, 494, 501, 636, 686, 690
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PctI	GAATGC	1 cut(s)	765
PfeI	GAWTC	3 cut(s)	196, 629, 929
PkrI	GCNGC	6 cut(s)	206, 328, 667, 764, 913, 916
PpuMI	RGGWCCY	1 cut(s)	504
PscI	ACATGT	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	658, 917
PspGI	CCWGG	2 cut(s)	658, 917
PspPI	GGNCC	5 cut(s)	504, 624, 679, 832, 994
PspPPI	RGGWCCY	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	764
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	233, 520
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	4 cut(s)	5, 470, 489, 811
RsaNI	GTAC	4 cut(s)	4, 469, 488, 810
SaqAI	TTAA	9 cut(s)	44, 111, 120, 455, 555, 650, 717, 743, 815
SatI	GCNGC	6 cut(s)	205, 327, 666, 763, 912, 915
Sau3AI	GATC	4 cut(s)	60, 233, 520, 753
Sau96I	GGNCC	5 cut(s)	504, 624, 679, 832, 994
ScrFI	CCNGG	4 cut(s)	660, 670, 671, 919
SduI	GDGCHC	5 cut(s)	574, 856, 905, 951, 988
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	3 cut(s)	224, 708, 760
SinI	GGWCC	4 cut(s)	504, 624, 679, 994
SmaI	CCCGGG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	814
SmoI	CTYRAG	1 cut(s)	814
SrfI	GCCCGGGC	1 cut(s)	671
Sse9I	AATT	3 cut(s)	728, 969, 1006
SsiI	CCGC	1 cut(s)	915
SspMI	CTAG	2 cut(s)	843, 1019
StyD4I	CCNGG	4 cut(s)	658, 668, 669, 917
TaiI	ACGT	5 cut(s)	28, 50, 609, 656, 867
TaqI	TCGA	2 cut(s)	752, 1012
TasI	AATT	3 cut(s)	728, 969, 1006
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	917
TfiI	GAWTC	3 cut(s)	196, 629, 929
Tru1I	TTAA	9 cut(s)	44, 111, 120, 455, 555, 650, 717, 743, 815
Tru9I	TTAA	9 cut(s)	44, 111, 120, 455, 555, 650, 717, 743, 815
TscAI	CASTG	1 cut(s)	945
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	5 cut(s)	204, 326, 665, 762, 911
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	7 cut(s)	29, 116, 228, 263, 320, 525, 621
TspMI	CCCGGG	1 cut(s)	669
TspRI	CASTG	1 cut(s)	945
Vha464I	CTTAAG	1 cut(s)	814
VneI	GTGCAC	2 cut(s)	852, 984
VpaK11BI	GGWCC	4 cut(s)	504, 624, 679, 994
XapI	RAATTY	1 cut(s)	969
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XmaI	CCCGGG	1 cut(s)	669
XspI	CTAG	2 cut(s)	843, 1019
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.