Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010361

Physical Location & Seq

Genomic Coordinates Reverse (-)

16627329 .. 16631090

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2694 bp

ATGGCGTCAACGCCGCCGCACTGTTCAATCACAGCGACCAAGCCGTATCAAACCCACCAATACCCACAAAACCAGCGCCTCAAATCTCAGCGGCAGACCCGTCAGAGCAACCAATGGACCACCCACCACGTCTCTCTCTCAAAGCCTCTACCTTTACCTCCCCAACCGCCGCGCACGGCGCCCAAACCCGCCGCCGCCGCCGCTCCCAGTCCGACCTCGTTTTCCTCTCTCTGCCCTCCGCCCAAGTCCGACCTCGTCGCCGCCTTCTCGGGCCGCCGCTCGACCCGGTTCGTGTCCAAAATGCACTTCGGCCGGCCCAAAACCACGGTGGGGTCCCGCCACTCCTCGCTGGCGGAGGAGGCCCTGCAGAGCGCAATCCAGTTCGGTAAGGACGATTTGGCCCTTGATGATGTTTTGCTTAGTTTCGAGTCTAAGCTTTGTGGGTCGGATGACTACACTTTTTTGCTTCGAGAGCTTGGGAATAGAGGTGAGTGTTGGAAGGCTATGAGGTGTTTCGAGTTTGCGGTGAGGAGGGAGAGAAGGAGAACTGAGCAGGGGAAATTAGCTAGCTCTATGATTAGTACTCTTGGTAGGTTGGGGAAGGTTGAGCTTGCCAAGAATGTGTTTCAGACTGCTGTCAATGAGGGTTATGGCAAGACTGTTTATACGTATTCGGCTTTGATTAGTGCTTATGGGCGCAGCGGATATTGCGATGAGGCTATTCGAGTGCTCGAGTCCATGAAAGATTCGGGCTTGAAGCCGAATTTGGTTACTTACAATGCGGTGATTGATGCGTGTGGAAAAGGGGGAGTGGAGTTTAAGAAGGTAGTGGAGATTTTCAATGAGATGCTTAAAATTGGGGTGCAACCTGATCGAATTACTTATAATTCTCTCCTTGCTGTTTGTAGTCGAGGGGGACTGTGGGAGGCGGCTAGAAACTTGTTCAGTGAGATGGTGGATAGAGGGATTGATCAGGATATTTATACCTATAATACGCTTTTGGATGCAATTTCTAAAGGTGGGCAGATGGATTTGGCATATCAGATTATGTCGGAGATGCCTTCAAAGAATATTTTGCCTAATGTGGTGACTTATAGTACTATGATCGATGGTTATGCTAAGGCTGGTAGATTAGAAGATGCACTCAGTTTATTTAATGAAATGAAGTTTTTGGCCGTTGGTCTGGATAGAGTTCTGTATAATACATTGCTGTCACTTTACGGGAAGCTTGGCAGGTTTGCAGAGGCTTTGAGTGTTTGCAAGGAGATGGAGAGTGTTGGGATTGTGAAGGATGTTGTATCTTATAATGCACTTCTTGGTGGGTATGGGAAGCAAGGGAAGTATGATGAAGTTAAAGGACTGTACAATGAAATGAAAGAAGAACGTGTATCACCAAATTTATTAACTTATTCAACATTGATTGATGTGTATTCAAAAGGTGGTTTGTATGTGGAGGCAATGAAGGTTTTCAGAGAGTTTAAGCAGGCAGGGCTGAAGGCTGATGTTGTGCTCTATAGTGAACTTATTAATGCTTTGTGCAAAAATGGGCTGGTGGAATCTGCTGTTTCATTGCTTGATGAGATGACCAAGGAAGGCATCCGACCTAATGTTGTCACTTATAATTCTATAATTGATGCCTTTGGTAGGCCAGCGACAACAGAGTGTGCAGTTGGTGCTGGTGCTGGAGGCATTGTGCTACACAATGAATGTTCTATAATTGATGCCTTTGGTAGGCCAGCGACAACAGAGTGTGCAGTTGGTGCTGGTGCTGGAGGCATTGTGCTACACAATGATTCTTTATCTTCAATTTCTGAAAGGGATGTTGACATTTCTGAAGAGAATGTTCAAGTTCAGGTGAGAGATATGGAGGATACCAGAATTATAAAGATGTTTGGGCAGCTTGCAGCTGATAAAGCTGGTTATGCAGAGAAAGATAGGAAGGTTAAACAAGAAATCTTGTGCATTTTGGGTGTCGTTCAGAAGATGCATGAGCTAGACATCAAACCGAATGTCGTCACATTTTCAGCCATTCTAAATGCATGCAGCCGCTGTAATTCATTTGAAGATGCTTCCATGTTATTGGAGGAATTGCGGTTGTTTGATAACCAGGTTTATGGTGTTGCCCATGGACTTCTTATGGGCTACAGGGGTAGTGTATGGGTTAAAGCTCAGTCCCTGTTTGATGAAGTTAAGCAGATGGACTGTTCAACTGCATCTGCATTCTACAATGCTCTTACCGACATGCTATGGCACTTTGGACAGAAACAAGGGGCGCAACTGGTTGTGCTTGAAGGGAAGCGCCGAAATGTATGGGAGAATGCATGGGAGAATTCACAGTTAGATTTGCATTTGATGTCTTCTGGGGCTGCCCGAGCAATGGTTCATGCATGGTTGCTCAATATACACTCTATAGTGTATAAGGGCCAACAATTGCCAAACCTATTAAGCATTTTGACAGGATGGGGCAAGCACAGCAAAGTAGTAGGCGACAGTGCCTTAAGACGAGCAATCGAGGCACTTCTTACCGGCATGGGTGCACCCTTTCAGGTTGCCAAACCTAACAAAGGTAGGTTTATTTCAACGGGATCTGTGGCTGCTGCATGGTTAAAAGAATCTGGCACACTGGAGGTGCTCAAGCTTCATGATGATAGGGCTGATCCAAATAGTGCAAATTTTGGCCAAATATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

898

Amino Acids

98.63

Weight (kDa)

8.13

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	192 - 285	3.9e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	208 - 268	7.1e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	220 - 268	3.5e-13	PPR repeat family
PPR_1	PF12854	220 - 248	4.1e-06	PPR repeat
PPR	PF01535	222 - 252	7.4e-08	PPR repeat
PPR_2	PF13041	293 - 338	1.5e-11	PPR repeat family
PPR	PF01535	293 - 323	1.4e-06	PPR repeat
PPR_long	PF17177	300 - 449	6.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	314 - 370	2.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	326 - 374	5.2e-16	PPR repeat family
PPR_3	PF13812	349 - 409	3.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	356 - 389	1.2e-13	PPR repeat
PPR_2	PF13041	360 - 390	2.5e-10	PPR repeat family
PPR	PF01535	363 - 389	4.9e-10	PPR repeat
PPR	PF01535	398 - 428	3.5e-06	PPR repeat
PPR_3	PF13812	419 - 478	1e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	430 - 478	9.1e-16	PPR repeat family
PPR	PF01535	433 - 462	5e-08	PPR repeat
PPR	PF01535	469 - 498	3.4e-06	PPR repeat
TPR_24	PF23276	486 - 549	2.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	488 - 548	1.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	497 - 529	6.3e-10	PPR repeat
PPR_2	PF13041	501 - 548	6.8e-16	PPR repeat family
PPR	PF01535	503 - 533	6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31400 AT2G31400
fragaria_vesca	FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040
malus_domestica	MD09G1284400.v1.1 MD17G1277600.v1.1
prunus_persica	Prupe.3G009900_v2.0.a1 Prupe.3G010400_v2.0.a1 Prupe.3G010400_v2.0.a1
pyrus_communis	pycom09g19230 pycom17g27520
rosa_chinensis	RchiOBHm_Chr3g0487361
rosa_laevigata	RLG00000023011
rosa_multiflora	Rmu_sc0001955.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394850
rosa_rugosa	Rorug03G0233500
rosa_samantha	Rh3DG313000
rosa_wichuraiana	Rw3G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	885, 1305, 1620, 1883
Acc36I	ACCTGC	1 cut(s)	1224
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	2 cut(s)	203, 279
AccII	CGCG	1 cut(s)	172
AclWI	GGATC	2 cut(s)	2593, 2651
AcoI	YGGCCR	3 cut(s)	310, 1173, 2677
AcsI	RAATTY	4 cut(s)	763, 1396, 2329, 2671
AcuI	CTGAAG	2 cut(s)	1514, 1854
AcyI	GRCGYC	2 cut(s)	5, 179
AfaI	GTAC	3 cut(s)	583, 1099, 1364
AfiI	CCNNNNNNNGG	5 cut(s)	330, 1644, 1731, 2377, 2564
AflII	CTTAAG	1 cut(s)	2497
AflIII	ACRYGT	1 cut(s)	1384
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	2106
AjuI	GAANNNNNNNTTGG	4 cut(s)	290, 322, 749, 781
Alw21I	GWGCWC	4 cut(s)	732, 1512, 2539, 2634
Alw26I	GTCTC	1 cut(s)	136
Alw44I	GTGCAC	1 cut(s)	2535
AlwI	GGATC	2 cut(s)	2593, 2651
AlwNI	CAGNNNCTG	2 cut(s)	2049, 2176
Ama87I	CYCGRG	3 cut(s)	268, 731, 2370
ApaLI	GTGCAC	1 cut(s)	2535
ApeKI	GCWGC	7 cut(s)	699, 1897, 1904, 2043, 2366, 2594, 2597
ApoI	RAATTY	4 cut(s)	763, 1396, 2329, 2671
ArsI	GACNNNNNNTTYG	2 cut(s)	1995, 2027
AseI	ATTAAT	1 cut(s)	1527
Asp700I	GAANNNNTTC	1 cut(s)	1466
AspLEI	GCGC	7 cut(s)	78, 174, 181, 374, 699, 2275, 2301
AspS9I	GGNCC	7 cut(s)	117, 271, 315, 333, 361, 400, 2422
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	6 cut(s)	500, 538, 796, 1099, 1383, 1867
AsuNHI	GCTAGC	1 cut(s)	566
AvaI	CYCGRG	3 cut(s)	268, 731, 2370
AvaII	GGWCC	2 cut(s)	117, 333
BaeGI	GKGCMC	1 cut(s)	2539
BalI	TGGCCA	1 cut(s)	2679
BanI	GGYRCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	2349
Bbv12I	GWGCWC	4 cut(s)	732, 1512, 2539, 2634
BbvI	GCAGC	7 cut(s)	711, 1909, 1916, 2055, 2353, 2581, 2584
BccI	CCATC	6 cut(s)	946, 1021, 1103, 1261, 2191, 2454
BceAI	ACGGC	3 cut(s)	28, 192, 1160
BcgI	CGANNNNNNTGC	4 cut(s)	854, 888, 1097, 1131
BciT130I	CCWGG	1 cut(s)	2108
BciVI	GTATCC	1 cut(s)	1864
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	567, 933, 1994
BfmI	CTRYAG	4 cut(s)	365, 1513, 2143, 2409
BfoI	RGCGCY	3 cut(s)	79, 182, 2302
BfrI	CTTAAG	1 cut(s)	2497
BfuAI	ACCTGC	1 cut(s)	1224
BfuI	GTATCC	1 cut(s)	1864
BmcAI	AGTACT	2 cut(s)	583, 1099
Bme1390I	CCNGG	2 cut(s)	286, 2108
Bme18I	GGWCC	2 cut(s)	117, 333
BmeT110I	CYCGRG	3 cut(s)	268, 731, 2370
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	7 cut(s)	117, 271, 315, 333, 361, 400, 2422
BmiI	GGNNCC	3 cut(s)	180, 334, 335
BmrFI	CCNGG	2 cut(s)	286, 2108
BmrI	ACTGGG	1 cut(s)	201
BmtI	GCTAGC	1 cut(s)	570
BmuI	ACTGGG	1 cut(s)	201
BoxI	GACNNNNGTC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	2349
BpmI	CTGGAG	3 cut(s)	1704, 1791, 2645
Bpu10I	CCTNAGC	1 cut(s)	1119
BpuEI	CTTGAG	1 cut(s)	2618
BpuMI	CCSGG	1 cut(s)	286
Bsa29I	ATCGAT	1 cut(s)	1107
BsaAI	YACGTR	1 cut(s)	669
BsaHI	GRCGYC	2 cut(s)	5, 179
BsaJI	CCNNGG	3 cut(s)	324, 1587, 2125
BsaXI	ACNNNNNCTCC	4 cut(s)	1677, 1707, 1764, 1794
Bsc4I	CCNNNNNNNGG	5 cut(s)	330, 1644, 1731, 2377, 2564
Bse118I	RCCGGY	2 cut(s)	312, 2525
Bse1I	ACTGG	4 cut(s)	207, 379, 2283, 2628
Bse3DI	GCAATG	4 cut(s)	1205, 1464, 1568, 2382
BseBI	CCWGG	1 cut(s)	2108
BseCI	ATCGAT	1 cut(s)	1107
BseDI	CCNNGG	3 cut(s)	324, 1587, 2125
BseGI	GGATG	6 cut(s)	454, 1009, 1297, 1596, 1825, 2465
BseLI	CCNNNNNNNGG	5 cut(s)	330, 1644, 1731, 2377, 2564
BseMI	GCAATG	4 cut(s)	1205, 1464, 1568, 2382
BseMII	CTCAG	4 cut(s)	101, 540, 1159, 2183
BseNI	ACTGG	4 cut(s)	207, 379, 2283, 2628
BseRI	GAGGAG	3 cut(s)	334, 371, 544
BseSI	GKGCMC	1 cut(s)	2539
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	7 cut(s)	711, 1909, 1916, 2055, 2353, 2581, 2584
BsgI	GTGCAG	2 cut(s)	1686, 1773
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	1107
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	4 cut(s)	732, 1512, 2539, 2634
BsiHKCI	CYCGRG	3 cut(s)	268, 731, 2370
BsiSI	CCGG	3 cut(s)	286, 313, 2526
BslFI	GGGAC	3 cut(s)	319, 930, 2158
BslI	CCNNNNNNNGG	5 cut(s)	330, 1644, 1731, 2377, 2564
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	3 cut(s)	319, 930, 2158
BsmI	GAATGC	2 cut(s)	2219, 2323
BsoBI	CYCGRG	3 cut(s)	268, 731, 2370
Bsp1286I	GDGCHC	4 cut(s)	732, 1512, 2539, 2634
Bsp1407I	TGTACA	1 cut(s)	1362
Bsp143I	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
Bsp19I	CCATGG	1 cut(s)	2125
BspCNI	CTCAG	4 cut(s)	100, 541, 1158, 2182
BspDI	ATCGAT	1 cut(s)	1107
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	2641
BspLI	GGNNCC	3 cut(s)	180, 334, 335
BspMAI	CTGCAG	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	1224
BspOI	GCTAGC	1 cut(s)	570
BspPI	GGATC	2 cut(s)	2593, 2651
BspT107I	GGYRCC	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	2497
BsrBI	CCGCTC	2 cut(s)	203, 279
BsrDI	GCAATG	4 cut(s)	1205, 1464, 1568, 2382
BsrFI	RCCGGY	2 cut(s)	312, 2525
BsrGI	TGTACA	1 cut(s)	1362
BsrI	ACTGG	4 cut(s)	207, 379, 2283, 2628
BssAI	RCCGGY	2 cut(s)	312, 2525
BssECI	CCNNGG	3 cut(s)	324, 1587, 2125
BssMI	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
BssNI	GRCGYC	2 cut(s)	5, 179
BssT1I	CCWWGG	2 cut(s)	1587, 2125
Bst2UI	CCWGG	1 cut(s)	2108
Bst4CI	ACNGT	8 cut(s)	23, 328, 661, 921, 1362, 2204, 2337, 2492
Bst6I	CTCTTC	1 cut(s)	1830
BstACI	GRCGYC	2 cut(s)	5, 179
BstAFI	CTTAAG	1 cut(s)	2497
BstAPI	GCANNNNNTGC	2 cut(s)	1673, 1760
BstAUI	TGTACA	1 cut(s)	1362
BstBAI	YACGTR	1 cut(s)	669
BstDEI	CTNAG	7 cut(s)	87, 419, 432, 549, 1119, 1145, 2169
BstDSI	CCRYGG	2 cut(s)	324, 2125
BstENI	CCTNNNNNAGG	3 cut(s)	1642, 1729, 2562
BstF5I	GGATG	6 cut(s)	454, 1009, 1297, 1596, 1825, 2465
BstFNI	CGCG	1 cut(s)	172
BstH2I	RGCGCY	3 cut(s)	79, 182, 2302
BstHHI	GCGC	7 cut(s)	78, 174, 181, 374, 699, 2275, 2301
BstKTI	GATC	5 cut(s)	874, 973, 1107, 2588, 2659
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
BstMCI	CGRYCG	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	2108
BstNSI	RCATGY	2 cut(s)	2043, 2245
BstPAI	GACNNNNGTC	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	284, 2106
BstSFI	CTRYAG	4 cut(s)	365, 1513, 2143, 2409
BstSLI	GKGCMC	1 cut(s)	2539
BstSNI	TACGTA	1 cut(s)	669
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	7 cut(s)	711, 1909, 1916, 2055, 2353, 2581, 2584
BstV2I	GAAGAC	1 cut(s)	2349
BstX2I	RGATCY	1 cut(s)	2585
BstXI	CCANNNNNNTGG	2 cut(s)	2080, 2114
BstYI	RGATCY	1 cut(s)	2585
BstZI	CGGCCG	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	1107
BsuI	GTATCC	1 cut(s)	1864
BsuTUI	ATCGAT	1 cut(s)	1107
BtgI	CCRYGG	2 cut(s)	324, 2125
BtgZI	GCGATG	1 cut(s)	726
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	6 cut(s)	454, 1009, 1297, 1596, 1825, 2465
BtsIMutI	CAGTG	4 cut(s)	19, 952, 2497, 2621
BveI	ACCTGC	1 cut(s)	1224
CaiI	CAGNNNCTG	2 cut(s)	2049, 2176
CciI	TCATGA	1 cut(s)	2641
CfoI	GCGC	7 cut(s)	78, 174, 181, 374, 699, 2275, 2301
Cfr10I	RCCGGY	2 cut(s)	312, 2525
Cfr13I	GGNCC	7 cut(s)	117, 271, 315, 333, 361, 400, 2422
ClaI	ATCGAT	1 cut(s)	1107
CsiI	ACCWGGT	1 cut(s)	2106
Csp6I	GTAC	3 cut(s)	582, 1098, 1363
CviQI	GTAC	3 cut(s)	582, 1098, 1363
DdeI	CTNAG	7 cut(s)	87, 419, 432, 549, 1119, 1145, 2169
DinI	GGCGCC	1 cut(s)	180
DpnI	GATC	5 cut(s)	873, 972, 1106, 2587, 2658
DpnII	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
EaeI	YGGCCR	3 cut(s)	310, 1173, 2677
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	1830
EarI	CTCTTC	1 cut(s)	1830
EciI	GGCGGA	2 cut(s)	228, 368
EclXI	CGGCCG	1 cut(s)	310
Eco105I	TACGTA	1 cut(s)	669
Eco130I	CCWWGG	2 cut(s)	1587, 2125
Eco47I	GGWCC	2 cut(s)	117, 333
Eco52I	CGGCCG	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	1514, 1854
Eco88I	CYCGRG	3 cut(s)	268, 731, 2370
EcoNI	CCTNNNNNAGG	3 cut(s)	1642, 1729, 2562
EcoO109I	RGGNCCY	2 cut(s)	333, 361
EcoRI	GAATTC	1 cut(s)	2329
EcoRII	CCWGG	1 cut(s)	2106
EcoT14I	CCWWGG	2 cut(s)	1587, 2125
EcoT22I	ATGCAT	4 cut(s)	1989, 2041, 2323, 2389
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
ErhI	CCWWGG	2 cut(s)	1587, 2125
Esp3I	CGTCTC	1 cut(s)	136
FaqI	GGGAC	3 cut(s)	319, 930, 2158
FauI	CCCGC	2 cut(s)	196, 344
FbaI	TGATCA	1 cut(s)	970
FokI	GGATG	6 cut(s)	461, 1016, 1304, 1583, 1832, 2472
FseI	GGCCGGCC	1 cut(s)	316
FspBI	CTAG	3 cut(s)	567, 933, 1994
GlaI	GCGC	7 cut(s)	77, 173, 180, 373, 698, 2274, 2300
GsuI	CTGGAG	3 cut(s)	1704, 1791, 2645
HaeII	RGCGCY	3 cut(s)	79, 182, 2302
HapII	CCGG	3 cut(s)	286, 313, 2526
HhaI	GCGC	7 cut(s)	78, 174, 181, 374, 699, 2275, 2301
Hin1I	GRCGYC	2 cut(s)	5, 179
Hin6I	GCGC	7 cut(s)	76, 172, 179, 372, 697, 2273, 2299
HinP1I	GCGC	7 cut(s)	76, 172, 179, 372, 697, 2273, 2299
HincII	GTYRAC	2 cut(s)	9, 1825
HindII	GTYRAC	2 cut(s)	9, 1825
HindIII	AAGCTT	3 cut(s)	434, 1226, 2636
HinfI	GANTC	6 cut(s)	428, 734, 746, 1556, 1793, 2612
HpaII	CCGG	3 cut(s)	286, 313, 2526
HphI	GGTGA	6 cut(s)	500, 538, 796, 1099, 1383, 1867
Hpy166II	GTNNAC	4 cut(s)	9, 1520, 1825, 2537
Hpy188III	TCNNGA	4 cut(s)	470, 974, 1184, 2642
Hpy8I	GTNNAC	4 cut(s)	9, 1520, 1825, 2537
Hpy99I	CGWCG	1 cut(s)	260
HpyCH4III	ACNGT	8 cut(s)	23, 328, 661, 921, 1362, 2204, 2337, 2492
HpyCH4IV	ACGT	3 cut(s)	129, 668, 1384
HpyF3I	CTNAG	7 cut(s)	87, 419, 432, 549, 1119, 1145, 2169
HpySE526I	ACGT	3 cut(s)	129, 668, 1384
Hsp92I	GRCGYC	2 cut(s)	5, 179
HspAI	GCGC	7 cut(s)	76, 172, 179, 372, 697, 2273, 2299
KasI	GGCGCC	1 cut(s)	178
KflI	GGGWCCC	1 cut(s)	333
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	7 cut(s)	711, 1909, 1916, 2055, 2353, 2581, 2584
MabI	ACCWGGT	1 cut(s)	2106
MaeI	CTAG	3 cut(s)	567, 933, 1994
MaeII	ACGT	3 cut(s)	129, 668, 1384
MaeIII	GTNAC	5 cut(s)	769, 1087, 1212, 1612, 2014
MalI	GATC	5 cut(s)	873, 972, 1106, 2587, 2658
MbiI	CCGCTC	2 cut(s)	203, 279
MboI	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
MboII	GAAGA	7 cut(s)	1148, 1391, 1794, 1847, 1993, 2075, 2349
MfeI	CAATTG	1 cut(s)	2429
MflI	RGATCY	1 cut(s)	2585
MhlI	GDGCHC	4 cut(s)	732, 1512, 2539, 2634
MlsI	TGGCCA	1 cut(s)	2679
MluNI	TGGCCA	1 cut(s)	2679
Mly113I	GGCGCC	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	437, 743
MmeI	TCCRAC	6 cut(s)	236, 273, 426, 476, 1032, 1624
Mox20I	TGGCCA	1 cut(s)	2679
Mph1103I	ATGCAT	4 cut(s)	1989, 2041, 2323, 2389
MroNI	GCCGGC	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	1466
MscI	TGGCCA	1 cut(s)	2679
Msp20I	TGGCCA	1 cut(s)	2679
MspA1I	CMGCKG	4 cut(s)	91, 702, 1907, 2049
MspCI	CTTAAG	1 cut(s)	2497
MspI	CCGG	3 cut(s)	286, 313, 2526
MspR9I	CCNGG	2 cut(s)	286, 2108
MunI	CAATTG	1 cut(s)	2429
Mva1269I	GAATGC	2 cut(s)	2219, 2323
MvaI	CCWGG	1 cut(s)	2108
MvnI	CGCG	1 cut(s)	172
NaeI	GCCGGC	1 cut(s)	314
NarI	GGCGCC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	2125
NdeII	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
NgoMIV	GCCGGC	1 cut(s)	312
NheI	GCTAGC	1 cut(s)	566
NlaIV	GGNNCC	3 cut(s)	180, 334, 335
NmuCI	GTSAC	4 cut(s)	1087, 1212, 1612, 2014
NsiI	ATGCAT	4 cut(s)	1989, 2041, 2323, 2389
NspI	RCATGY	2 cut(s)	2043, 2245
PaeI	GCATGC	1 cut(s)	2043
PaeR7I	CTCGAG	1 cut(s)	731
PagI	TCATGA	1 cut(s)	2641
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	2 cut(s)	2219, 2323
PdiI	GCCGGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	1466
PfeI	GAWTC	4 cut(s)	746, 1556, 1793, 2612
PflFI	GACNNNGTC	1 cut(s)	254
PleI	GAGTC	2 cut(s)	436, 742
PluTI	GGCGCC	1 cut(s)	182
PpsI	GAGTC	2 cut(s)	436, 742
Ppu21I	YACGTR	1 cut(s)	669
PpuMI	RGGWCCY	1 cut(s)	333
PshAI	GACNNNNGTC	1 cut(s)	635
PshBI	ATTAAT	1 cut(s)	1527
PsiI	TTATAA	4 cut(s)	885, 1305, 1620, 1883
Psp5II	RGGWCCY	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	2106
PspGI	CCWGG	1 cut(s)	2106
PspN4I	GGNNCC	3 cut(s)	180, 334, 335
PspPI	GGNCC	7 cut(s)	117, 271, 315, 333, 361, 400, 2422
PspPPI	RGGWCCY	1 cut(s)	333
PspXI	VCTCGAGB	1 cut(s)	731
PstI	CTGCAG	1 cut(s)	369
PstNI	CAGNNNCTG	2 cut(s)	2049, 2176
PsuI	RGATCY	1 cut(s)	2585
PsyI	GACNNNGTC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	1907
RigI	GGCCGGCC	1 cut(s)	316
RsaI	GTAC	3 cut(s)	583, 1099, 1364
RsaNI	GTAC	3 cut(s)	582, 1098, 1363
Sau3AI	GATC	5 cut(s)	871, 970, 1104, 2585, 2656
Sau96I	GGNCC	7 cut(s)	117, 271, 315, 333, 361, 400, 2422
ScaI	AGTACT	2 cut(s)	583, 1099
SchI	GAGTC	2 cut(s)	437, 743
ScrFI	CCNGG	2 cut(s)	286, 2108
SduI	GDGCHC	4 cut(s)	732, 1512, 2539, 2634
SexAI	ACCWGGT	1 cut(s)	2106
SfcI	CTRYAG	4 cut(s)	365, 1513, 2143, 2409
SfoI	GGCGCC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	731
SinI	GGWCC	2 cut(s)	117, 333
SlaI	CTCGAG	1 cut(s)	731
SmlI	CTYRAG	3 cut(s)	731, 2497, 2633
SmoI	CTYRAG	3 cut(s)	731, 2497, 2633
SnaBI	TACGTA	1 cut(s)	669
SphI	GCATGC	1 cut(s)	2043
SspDI	GGCGCC	1 cut(s)	178
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	3 cut(s)	567, 933, 1994
StyD4I	CCNGG	2 cut(s)	284, 2106
StyI	CCWWGG	2 cut(s)	1587, 2125
TaaI	ACNGT	8 cut(s)	23, 328, 661, 921, 1362, 2204, 2337, 2492
TaiI	ACGT	3 cut(s)	132, 671, 1387
TatI	WGTACW	3 cut(s)	581, 1097, 1362
TfiI	GAWTC	4 cut(s)	746, 1556, 1793, 2612
TscAI	CASTG	4 cut(s)	26, 952, 2497, 2628
TseFI	GTSAC	4 cut(s)	1087, 1212, 1612, 2014
TseI	GCWGC	7 cut(s)	699, 1897, 1904, 2043, 2366, 2594, 2597
Tsp45I	GTSAC	4 cut(s)	1087, 1212, 1612, 2014
TspRI	CASTG	4 cut(s)	26, 952, 2497, 2628
Tth111I	GACNNNGTC	1 cut(s)	254
Vha464I	CTTAAG	1 cut(s)	2497
VneI	GTGCAC	1 cut(s)	2535
VpaK11BI	GGWCC	2 cut(s)	117, 333
VspI	ATTAAT	1 cut(s)	1527
XagI	CCTNNNNNAGG	3 cut(s)	1642, 1729, 2562
XapI	RAATTY	4 cut(s)	763, 1396, 2329, 2671
XceI	RCATGY	2 cut(s)	2043, 2245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	1466
XspI	CTAG	3 cut(s)	567, 933, 1994
ZrmI	AGTACT	2 cut(s)	583, 1099
Zsp2I	ATGCAT	4 cut(s)	1989, 2041, 2323, 2389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.