Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010361

Physical Location & Seq

Genomic Coordinates Forward (+)

33628856 .. 33632542

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG313000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGGCGTCAACGCCGCCGCACTGTTCAATCACAGCGACCAAGCCGTACCAAACCCACCAATACCCACAAAACCAGCGCCTCAAATCTCAGCGGCAGACCCGTCAGAGCAACCAATGGACCACCCACCACGTCTCTCTCTCAAAGCCTCTACCTTTACCCCCGCAACCGCCGCGCACGGCGGCGAAACCCGCTTCCTCCGCCGCCGCCGCTCCCAGTCCGACCTCCTTTTCCTCTCTCTGCCCTCCGTCGAAGTCCGACCTCGTCGCCGCCTTCTCGGGCCGCCGCTCGACCCGGTTCGTGTCCAAAATGCACTTCGGCCGGCCCAAAACCACGGTGGGGTCCCGCCACTCCTCGCTGGCGGAGGAGGCCCTGCAGAGCGCAATCCAGTTCGGTAAGGACGATTTGGCCCTTGATGATGTTTTGCTTAGTTTCGAGTCTAGGCTTTGTGGGTCGGATGATTACACTTTTTTGCTTAGAGAGCTTGGGAATAGAGGTGAGTGTTGGAAGGCTATGAGGTGTTTCGAGTTTGCGGTGAGGAGGGAGAGAAGGAGAACCGAGCAGGGGAAATTAGCTAGCTCTATGATTAGTACTCTTGGTAGGTTGGGGAAGGTTGAGCTTGCCAAGAATGTGTTTCAGACTGCTGTCAACGAGGGTTATGGCAAGACTGTTTATACCTATTCGGCTTTGATTAGTGCTTATGGGCGCAGCGGGTATTGCGATGAGGCTATTCGAGTGCTCGAGTCCATGAAAGATTCGGGCTTGAAGCCGAATTTGGTTACTTACAATGCGGTGATTGATGCATGTGGAAAAGGGGGAGTGGAGTTTAAGAAGGTAGTGGAGATTTTCAATGAGATGCTTAAAATTGGGGTGCAGCCTGATCGAATTACTTATAATTCTCTCCTTGCGGTTTGTAGTCGAGGGGGACTGTGGGAGGCGGCTAGAAACTTGTTCAGTGAGATGGTGGATAGAGGGATTGATCAGGATATTTATACCTATAATACACTTTTGGATGCAATTTCTAAAGGTGGGAAGATGGATTTGGCATATCAGATTATGTCGGAGATGCCTTCAAAGAATATTTTGCCTAATGTGGTGACTTATAGTACTATGATCGATGGTTATGCTAAGGCTGGTAGATTAGAAGATGCACTCAGTTTATTTAATGAAATGAAGTTTTTGGCCATTGGTCTGGATAGAGTTCTGTATAATACATTGCTGTCACTTTACGGGAAGCTTGGCAGGTTTGCAGAGGCTTTGAATGTTTGCAAGGAGATGGAGAGTGTTGGGATTGTGAAGGACGTTGTATCTTATAATGCACTTCTTGGTGGGTATGGGAAGCAAGGCAAGTATGATCAAGTTAAAGCACTGTACAATGAAATGAAAGAAGAACGTGTATCACCAAATTTATTAACTTATTCAACATTGATCGATGTGTATTCAAAAGGTGGTTTGTATGTGGAGGCAATGAAAGTTTTCAGAGAGTTTAAGCAGGCAGGGCTGAAGGCTGATGTTGTTCTCTATAGTGAACTTATTAATGCTTTGTGCAAAAACGGGCTGGTGGAATCTGCTGTTTCATTGCTTGATGAGATGACCAAGGAAGGCATCCGACCTAATGTTGTCACTTATAATTCTATAATTGATGCCTTTGGTAGGCCAGCGACAACAGAGTGTGCAGTTGGTGCTGGTGCTGGAGGCATTGTGCTACACAATGAATCTTCATCTTCAATTTCTGAAAGGGATGTTGACATTTCTGAAGAGAATGTTCAAATTCAGGTGAGAGATATGGAGGATACCAGAATTATAAAGATGTTTGGGCAGCTTGCAGCTGATAAAGCTGGTTATGCAGAGAAAGATAGGAAGGTTAGACAAGAAATCTTGTGCATTTTGGGTGTCGTTCAGAAGATGCATGAGCTAGACATCAAACCGAATGTCGTCACATTTTCAGCCATTCTAAATGCTTGCAGCCGCTGTAATTCATTTGAAGATGCTTCCATGTTATTGGAGGAATTGCGGTTGTTTGATAACCAGGTTTATGGTGTTGCCCATGGACTTCTTATGGGCTACAGGGGTAGTGTATGGGTTAAAGCTCAGTCTCTGTTTGATGAAGTTAAGCAGATGGACTGTTCAACTGCATCTGCATTCTACAATGCTCTTACCGACATGCTATGGCACTTTGGACAGAAACAAGGGGCGCAACTGGTTGTGCTTGAAGGGAAGCGTCGAAATGTATGGGAGAATGCATGGGAGAATTCACAGTTAGATTTGCATTTGATGTCTTCTGGGGCTGCCCGAGCAATGGTTCATGCATGGTTGCTCAATATACACTCTATAGTGTATAAGGGCCAACAATTGCCAAACCTATTAAGCATTTTGACAGGATGGGGCAAGCACAGCAAAGTAGTAGGCGATAGTGCCTTAAGACGAGCAATCGAGGCACTTCTTACCGGCATGGGTGCACCCTTTCAGGTTGCCAAGCCTAACAAAGGTAGGTTTATTTCGACGGGATCTGTGGCTGCTGCATGGTTAAAAGAATCTGGCACACTGGAGGTGCTCAAGCTTCATGATGATAGGGCTGATCCAAATAGTGCAAATTTTGGCCAAATATCCAATTTACGAGCGCTCGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

876

Amino Acids

96.71

Weight (kDa)

8.64

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	194 - 286	4.1e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	210 - 270	6.9e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	222 - 270	3.4e-13	PPR repeat family
PPR_1	PF12854	222 - 250	4e-06	PPR repeat
PPR	PF01535	224 - 254	7.2e-08	PPR repeat
PPR_2	PF13041	295 - 340	1.4e-11	PPR repeat family
PPR	PF01535	295 - 325	1.4e-06	PPR repeat
PPR_long	PF17177	304 - 453	4.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	316 - 374	4.1e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	328 - 376	5.2e-16	PPR repeat family
PPR_3	PF13812	351 - 411	1.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	358 - 391	1.2e-13	PPR repeat
PPR_2	PF13041	362 - 392	2.4e-10	PPR repeat family
PPR	PF01535	365 - 391	4.8e-10	PPR repeat
PPR	PF01535	400 - 430	9.2e-06	PPR repeat
PPR_3	PF13812	421 - 480	5.8e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	432 - 480	8.5e-16	PPR repeat family
PPR	PF01535	435 - 464	5.8e-07	PPR repeat
PPR	PF01535	471 - 500	3.3e-06	PPR repeat
TPR_24	PF23276	488 - 551	2.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	490 - 550	1.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	499 - 531	6.2e-10	PPR repeat
PPR_2	PF13041	503 - 550	6.6e-16	PPR repeat family
PPR	PF01535	505 - 535	5.8e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31400 AT2G31400
fragaria_vesca	FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040
malus_domestica	MD09G1284400.v1.1 MD17G1277600.v1.1
prunus_persica	Prupe.3G009900_v2.0.a1 Prupe.3G010400_v2.0.a1 Prupe.3G010400_v2.0.a1
pyrus_communis	pycom09g19230 pycom17g27520
rosa_chinensis	RchiOBHm_Chr3g0487361
rosa_laevigata	RLG00000023011
rosa_multiflora	Rmu_sc0001955.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394850
rosa_rugosa	Rorug03G0233500
rosa_samantha	Rh3DG313000
rosa_wichuraiana	Rw3G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	891, 1311, 1626, 1802
Acc36I	ACCTGC	1 cut(s)	1230
AccBSI	CCGCTC	2 cut(s)	209, 285
AccII	CGCG	1 cut(s)	172
AclWI	GGATC	2 cut(s)	2512, 2570
AcoI	YGGCCR	3 cut(s)	316, 1179, 2596
AcsI	RAATTY	5 cut(s)	769, 1402, 1767, 2248, 2590
AcuI	CTGAAG	2 cut(s)	1520, 1773
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	47, 589, 1105, 1370
AfeI	AGCGCT	1 cut(s)	2619
AfiI	CCNNNNNNNGG	5 cut(s)	336, 561, 1650, 2296, 2483
AflII	CTTAAG	1 cut(s)	2416
AflIII	ACRYGT	1 cut(s)	1390
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	2025
AjuI	GAANNNNNNNTTGG	6 cut(s)	296, 328, 755, 787, 1022, 1054
Alw21I	GWGCWC	3 cut(s)	738, 2458, 2553
Alw26I	GTCTC	2 cut(s)	136, 2097
Alw44I	GTGCAC	1 cut(s)	2454
AlwI	GGATC	2 cut(s)	2512, 2570
AlwNI	CAGNNNCTG	2 cut(s)	1968, 2095
Ama87I	CYCGRG	3 cut(s)	274, 737, 2289
Aor51HI	AGCGCT	1 cut(s)	2619
AoxI	GGCC	9 cut(s)	277, 316, 320, 366, 405, 1179, 1652, 2341, 2596
ApaLI	GTGCAC	1 cut(s)	2454
ApeKI	GCWGC	8 cut(s)	705, 871, 1816, 1823, 1962, 2285, 2513, 2516
ApoI	RAATTY	5 cut(s)	769, 1402, 1767, 2248, 2590
ArsI	GACNNNNNNTTYG	2 cut(s)	1914, 1946
AseI	ATTAAT	1 cut(s)	1533
Asp700I	GAANNNNTTC	1 cut(s)	1472
AspLEI	GCGC	6 cut(s)	78, 174, 380, 705, 2194, 2620
AspS9I	GGNCC	7 cut(s)	117, 277, 321, 339, 367, 406, 2341
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	6 cut(s)	506, 544, 802, 1105, 1389, 1786
AsuNHI	GCTAGC	1 cut(s)	572
AvaI	CYCGRG	3 cut(s)	274, 737, 2289
AvaII	GGWCC	2 cut(s)	117, 339
BaeGI	GKGCMC	1 cut(s)	2458
BalI	TGGCCA	2 cut(s)	1181, 2598
BbsI	GAAGAC	1 cut(s)	2268
Bbv12I	GWGCWC	3 cut(s)	738, 2458, 2553
BbvI	GCAGC	8 cut(s)	717, 883, 1828, 1835, 1974, 2272, 2500, 2503
BccI	CCATC	6 cut(s)	952, 1027, 1109, 1267, 2110, 2373
BceAI	ACGGC	2 cut(s)	28, 192
BcgI	CGANNNNNNTGC	4 cut(s)	860, 894, 1103, 1137
BciT130I	CCWGG	1 cut(s)	2027
BciVI	GTATCC	1 cut(s)	1783
BclI	TGATCA	2 cut(s)	976, 1351
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	136, 2097
BfaI	CTAG	4 cut(s)	438, 573, 939, 1913
BfmI	CTRYAG	4 cut(s)	371, 1519, 2062, 2328
BfoI	RGCGCY	2 cut(s)	79, 2621
BfrI	CTTAAG	1 cut(s)	2416
BfuAI	ACCTGC	1 cut(s)	1230
BfuI	GTATCC	1 cut(s)	1783
BmcAI	AGTACT	2 cut(s)	589, 1105
Bme1390I	CCNGG	2 cut(s)	292, 2027
Bme18I	GGWCC	2 cut(s)	117, 339
BmeT110I	CYCGRG	3 cut(s)	274, 737, 2289
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	7 cut(s)	117, 277, 321, 339, 367, 406, 2341
BmiI	GGNNCC	2 cut(s)	340, 341
BmrFI	CCNGG	2 cut(s)	292, 2027
BmrI	ACTGGG	1 cut(s)	207
BmtI	GCTAGC	1 cut(s)	576
BmuI	ACTGGG	1 cut(s)	207
BoxI	GACNNNNGTC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	2268
BpmI	CTGGAG	2 cut(s)	1710, 2564
Bpu10I	CCTNAGC	1 cut(s)	1125
BpuEI	CTTGAG	1 cut(s)	2537
BpuMI	CCSGG	1 cut(s)	292
Bsa29I	ATCGAT	2 cut(s)	1113, 1428
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	330, 1593, 2044
BsaXI	ACNNNNNCTCC	2 cut(s)	1683, 1713
Bsc4I	CCNNNNNNNGG	5 cut(s)	336, 561, 1650, 2296, 2483
Bse118I	RCCGGY	2 cut(s)	318, 2444
Bse1I	ACTGG	4 cut(s)	213, 385, 2202, 2547
Bse3DI	GCAATG	4 cut(s)	1211, 1470, 1574, 2301
BseBI	CCWGG	1 cut(s)	2027
BseCI	ATCGAT	2 cut(s)	1113, 1428
BseDI	CCNNGG	3 cut(s)	330, 1593, 2044
BseGI	GGATG	5 cut(s)	460, 1015, 1602, 1744, 2384
BseLI	CCNNNNNNNGG	5 cut(s)	336, 561, 1650, 2296, 2483
BseMI	GCAATG	4 cut(s)	1211, 1470, 1574, 2301
BseMII	CTCAG	3 cut(s)	101, 1165, 2102
BseNI	ACTGG	4 cut(s)	213, 385, 2202, 2547
BseRI	GAGGAG	3 cut(s)	340, 377, 550
BseSI	GKGCMC	1 cut(s)	2458
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	8 cut(s)	717, 883, 1828, 1835, 1974, 2272, 2500, 2503
BsgI	GTGCAG	2 cut(s)	890, 1692
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	9 cut(s)	279, 318, 322, 368, 407, 1181, 1654, 2343, 2598
BshVI	ATCGAT	2 cut(s)	1113, 1428
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	3 cut(s)	738, 2458, 2553
BsiHKCI	CYCGRG	3 cut(s)	274, 737, 2289
BsiSI	CCGG	3 cut(s)	292, 319, 2445
BslFI	GGGAC	2 cut(s)	325, 936
BslI	CCNNNNNNNGG	5 cut(s)	336, 561, 1650, 2296, 2483
BsmAI	GTCTC	2 cut(s)	136, 2097
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	325, 936
BsmI	GAATGC	2 cut(s)	2138, 2242
BsnI	GGCC	9 cut(s)	279, 318, 322, 368, 407, 1181, 1654, 2343, 2598
BsoBI	CYCGRG	3 cut(s)	274, 737, 2289
Bsp1286I	GDGCHC	3 cut(s)	738, 2458, 2553
Bsp1407I	TGTACA	1 cut(s)	1368
Bsp143I	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
Bsp19I	CCATGG	1 cut(s)	2044
BspANI	GGCC	9 cut(s)	279, 318, 322, 368, 407, 1181, 1654, 2343, 2598
BspCNI	CTCAG	3 cut(s)	100, 1164, 2101
BspDI	ATCGAT	2 cut(s)	1113, 1428
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	2560
BspLI	GGNNCC	2 cut(s)	340, 341
BspMAI	CTGCAG	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	1230
BspOI	GCTAGC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	2512, 2570
BspTI	CTTAAG	1 cut(s)	2416
BsrBI	CCGCTC	2 cut(s)	209, 285
BsrDI	GCAATG	4 cut(s)	1211, 1470, 1574, 2301
BsrFI	RCCGGY	2 cut(s)	318, 2444
BsrGI	TGTACA	1 cut(s)	1368
BsrI	ACTGG	4 cut(s)	213, 385, 2202, 2547
BssAI	RCCGGY	2 cut(s)	318, 2444
BssECI	CCNNGG	3 cut(s)	330, 1593, 2044
BssMI	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	1593, 2044
Bst2UI	CCWGG	1 cut(s)	2027
Bst4CI	ACNGT	7 cut(s)	23, 334, 667, 927, 1368, 2123, 2256
Bst6I	CTCTTC	1 cut(s)	1749
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	2416
BstAPI	GCANNNNNTGC	1 cut(s)	1679
BstAUI	TGTACA	1 cut(s)	1368
BstDEI	CTNAG	6 cut(s)	87, 425, 473, 1125, 1151, 2088
BstDSI	CCRYGG	2 cut(s)	330, 2044
BstENI	CCTNNNNNAGG	2 cut(s)	1648, 2481
BstF5I	GGATG	5 cut(s)	460, 1015, 1602, 1744, 2384
BstFNI	CGCG	1 cut(s)	172
BstH2I	RGCGCY	2 cut(s)	79, 2621
BstHHI	GCGC	6 cut(s)	78, 174, 380, 705, 2194, 2620
BstKTI	GATC	7 cut(s)	880, 979, 1113, 1354, 1428, 2507, 2578
BstMAI	GTCTC	2 cut(s)	136, 2097
BstMBI	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
BstMCI	CGRYCG	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	2027
BstNSI	RCATGY	2 cut(s)	804, 2164
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	290, 2025
BstSFI	CTRYAG	4 cut(s)	371, 1519, 2062, 2328
BstSLI	GKGCMC	1 cut(s)	2458
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	8 cut(s)	717, 883, 1828, 1835, 1974, 2272, 2500, 2503
BstV2I	GAAGAC	1 cut(s)	2268
BstX2I	RGATCY	1 cut(s)	2504
BstXI	CCANNNNNNTGG	3 cut(s)	1189, 1999, 2033
BstYI	RGATCY	1 cut(s)	2504
BstZI	CGGCCG	1 cut(s)	316
Bsu15I	ATCGAT	2 cut(s)	1113, 1428
BsuI	GTATCC	1 cut(s)	1783
BsuRI	GGCC	9 cut(s)	279, 318, 322, 368, 407, 1181, 1654, 2343, 2598
BsuTUI	ATCGAT	2 cut(s)	1113, 1428
BtgI	CCRYGG	2 cut(s)	330, 2044
BtgZI	GCGATG	1 cut(s)	732
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	5 cut(s)	460, 1015, 1602, 1744, 2384
BtsIMutI	CAGTG	4 cut(s)	19, 958, 1364, 2540
BveI	ACCTGC	1 cut(s)	1230
CaiI	CAGNNNCTG	2 cut(s)	1968, 2095
CciI	TCATGA	1 cut(s)	2560
CfoI	GCGC	6 cut(s)	78, 174, 380, 705, 2194, 2620
Cfr10I	RCCGGY	2 cut(s)	318, 2444
Cfr13I	GGNCC	7 cut(s)	117, 277, 321, 339, 367, 406, 2341
ClaI	ATCGAT	2 cut(s)	1113, 1428
CseI	GACGC	1 cut(s)	2207
CsiI	ACCWGGT	1 cut(s)	2025
Csp6I	GTAC	4 cut(s)	46, 588, 1104, 1369
CviQI	GTAC	4 cut(s)	46, 588, 1104, 1369
DdeI	CTNAG	6 cut(s)	87, 425, 473, 1125, 1151, 2088
DpnI	GATC	7 cut(s)	879, 978, 1112, 1353, 1427, 2506, 2577
DpnII	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
EaeI	YGGCCR	3 cut(s)	316, 1179, 2596
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	1749
EarI	CTCTTC	1 cut(s)	1749
EciI	GGCGGA	2 cut(s)	187, 374
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	1593, 2044
Eco47I	GGWCC	2 cut(s)	117, 339
Eco47III	AGCGCT	1 cut(s)	2619
Eco52I	CGGCCG	1 cut(s)	316
Eco57I	CTGAAG	2 cut(s)	1520, 1773
Eco88I	CYCGRG	3 cut(s)	274, 737, 2289
EcoNI	CCTNNNNNAGG	2 cut(s)	1648, 2481
EcoO109I	RGGNCCY	2 cut(s)	339, 367
EcoRI	GAATTC	1 cut(s)	2248
EcoRII	CCWGG	1 cut(s)	2025
EcoT14I	CCWWGG	2 cut(s)	1593, 2044
EcoT22I	ATGCAT	4 cut(s)	802, 1908, 2242, 2308
ErhI	CCWWGG	2 cut(s)	1593, 2044
Esp3I	CGTCTC	1 cut(s)	136
FaqI	GGGAC	2 cut(s)	325, 936
FauI	CCCGC	4 cut(s)	168, 196, 350, 701
FbaI	TGATCA	2 cut(s)	976, 1351
FokI	GGATG	5 cut(s)	467, 1022, 1589, 1751, 2391
FseI	GGCCGGCC	1 cut(s)	322
FspBI	CTAG	4 cut(s)	438, 573, 939, 1913
GlaI	GCGC	6 cut(s)	77, 173, 379, 704, 2193, 2619
GsuI	CTGGAG	2 cut(s)	1710, 2564
HaeII	RGCGCY	2 cut(s)	79, 2621
HaeIII	GGCC	9 cut(s)	279, 318, 322, 368, 407, 1181, 1654, 2343, 2598
HapII	CCGG	3 cut(s)	292, 319, 2445
HgaI	GACGC	1 cut(s)	2207
HhaI	GCGC	6 cut(s)	78, 174, 380, 705, 2194, 2620
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	6 cut(s)	76, 172, 378, 703, 2192, 2618
HinP1I	GCGC	6 cut(s)	76, 172, 378, 703, 2192, 2618
HincII	GTYRAC	3 cut(s)	9, 646, 1744
HindII	GTYRAC	3 cut(s)	9, 646, 1744
HindIII	AAGCTT	2 cut(s)	1232, 2555
HinfI	GANTC	6 cut(s)	434, 740, 752, 1562, 1712, 2531
HpaII	CCGG	3 cut(s)	292, 319, 2445
HphI	GGTGA	6 cut(s)	506, 544, 802, 1105, 1389, 1786
Hpy166II	GTNNAC	5 cut(s)	9, 646, 1526, 1744, 2456
Hpy188III	TCNNGA	3 cut(s)	980, 1190, 2561
Hpy8I	GTNNAC	5 cut(s)	9, 646, 1526, 1744, 2456
Hpy99I	CGWCG	4 cut(s)	250, 266, 2223, 2503
HpyCH4III	ACNGT	7 cut(s)	23, 334, 667, 927, 1368, 2123, 2256
HpyCH4IV	ACGT	3 cut(s)	129, 1299, 1390
HpyF3I	CTNAG	6 cut(s)	87, 425, 473, 1125, 1151, 2088
HpySE526I	ACGT	3 cut(s)	129, 1299, 1390
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	6 cut(s)	76, 172, 378, 703, 2192, 2618
KflI	GGGWCCC	1 cut(s)	339
KroI	GCCGGC	1 cut(s)	318
KroNI	GCCGGC	1 cut(s)	320
Ksp22I	TGATCA	2 cut(s)	976, 1351
Kzo9I	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	8 cut(s)	717, 883, 1828, 1835, 1974, 2272, 2500, 2503
MabI	ACCWGGT	1 cut(s)	2025
MaeI	CTAG	4 cut(s)	438, 573, 939, 1913
MaeII	ACGT	3 cut(s)	129, 1299, 1390
MaeIII	GTNAC	5 cut(s)	775, 1093, 1218, 1618, 1933
MalI	GATC	7 cut(s)	879, 978, 1112, 1353, 1427, 2506, 2577
MbiI	CCGCTC	2 cut(s)	209, 285
MboI	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
MboII	GAAGA	9 cut(s)	1042, 1154, 1397, 1707, 1713, 1766, 1912, 1994, 2268
MfeI	CAATTG	1 cut(s)	2348
MflI	RGATCY	1 cut(s)	2504
MhlI	GDGCHC	3 cut(s)	738, 2458, 2553
MlsI	TGGCCA	2 cut(s)	1181, 2598
MluNI	TGGCCA	2 cut(s)	1181, 2598
MlyI	GAGTC	2 cut(s)	443, 749
MmeI	TCCRAC	6 cut(s)	242, 279, 432, 482, 1038, 1630
Mox20I	TGGCCA	2 cut(s)	1181, 2598
Mph1103I	ATGCAT	4 cut(s)	802, 1908, 2242, 2308
MroNI	GCCGGC	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	1472
MscI	TGGCCA	2 cut(s)	1181, 2598
Msp20I	TGGCCA	2 cut(s)	1181, 2598
MspA1I	CMGCKG	4 cut(s)	91, 708, 1826, 1968
MspCI	CTTAAG	1 cut(s)	2416
MspI	CCGG	3 cut(s)	292, 319, 2445
MspR9I	CCNGG	2 cut(s)	292, 2027
MunI	CAATTG	1 cut(s)	2348
Mva1269I	GAATGC	2 cut(s)	2138, 2242
MvaI	CCWGG	1 cut(s)	2027
MvnI	CGCG	1 cut(s)	172
NaeI	GCCGGC	1 cut(s)	320
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	2044
NdeII	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
NgoMIV	GCCGGC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	572
NlaIV	GGNNCC	2 cut(s)	340, 341
NmuCI	GTSAC	4 cut(s)	1093, 1218, 1618, 1933
NsiI	ATGCAT	4 cut(s)	802, 1908, 2242, 2308
NspI	RCATGY	2 cut(s)	804, 2164
PaeR7I	CTCGAG	1 cut(s)	737
PagI	TCATGA	1 cut(s)	2560
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	2 cut(s)	2138, 2242
PdiI	GCCGGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	1472
PfeI	GAWTC	4 cut(s)	752, 1562, 1712, 2531
PflFI	GACNNNGTC	1 cut(s)	260
PleI	GAGTC	2 cut(s)	442, 748
PpsI	GAGTC	2 cut(s)	442, 748
PpuMI	RGGWCCY	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	1533
PsiI	TTATAA	4 cut(s)	891, 1311, 1626, 1802
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	2025
PspGI	CCWGG	1 cut(s)	2025
PspN4I	GGNNCC	2 cut(s)	340, 341
PspPI	GGNCC	7 cut(s)	117, 277, 321, 339, 367, 406, 2341
PspPPI	RGGWCCY	1 cut(s)	339
PspXI	VCTCGAGB	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	375
PstNI	CAGNNNCTG	2 cut(s)	1968, 2095
PsuI	RGATCY	1 cut(s)	2504
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	1826
RigI	GGCCGGCC	1 cut(s)	322
RsaI	GTAC	4 cut(s)	47, 589, 1105, 1370
RsaNI	GTAC	4 cut(s)	46, 588, 1104, 1369
Sau3AI	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2504, 2575
Sau96I	GGNCC	7 cut(s)	117, 277, 321, 339, 367, 406, 2341
ScaI	AGTACT	2 cut(s)	589, 1105
SchI	GAGTC	2 cut(s)	443, 749
ScrFI	CCNGG	2 cut(s)	292, 2027
SduI	GDGCHC	3 cut(s)	738, 2458, 2553
SexAI	ACCWGGT	1 cut(s)	2025
SfcI	CTRYAG	4 cut(s)	371, 1519, 2062, 2328
Sfr274I	CTCGAG	1 cut(s)	737
SinI	GGWCC	2 cut(s)	117, 339
SlaI	CTCGAG	1 cut(s)	737
SmlI	CTYRAG	3 cut(s)	737, 2416, 2552
SmoI	CTYRAG	3 cut(s)	737, 2416, 2552
SspI	AATATT	1 cut(s)	1078
SspMI	CTAG	4 cut(s)	438, 573, 939, 1913
StyD4I	CCNGG	2 cut(s)	290, 2025
StyI	CCWWGG	2 cut(s)	1593, 2044
TaaI	ACNGT	7 cut(s)	23, 334, 667, 927, 1368, 2123, 2256
TaiI	ACGT	3 cut(s)	132, 1302, 1393
TatI	WGTACW	3 cut(s)	587, 1103, 1368
TfiI	GAWTC	4 cut(s)	752, 1562, 1712, 2531
TscAI	CASTG	4 cut(s)	26, 958, 1371, 2547
TseFI	GTSAC	4 cut(s)	1093, 1218, 1618, 1933
TseI	GCWGC	8 cut(s)	705, 871, 1816, 1823, 1962, 2285, 2513, 2516
Tsp45I	GTSAC	4 cut(s)	1093, 1218, 1618, 1933
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	4 cut(s)	26, 958, 1371, 2547
Tth111I	GACNNNGTC	1 cut(s)	260
Vha464I	CTTAAG	1 cut(s)	2416
VneI	GTGCAC	1 cut(s)	2454
VpaK11BI	GGWCC	2 cut(s)	117, 339
VspI	ATTAAT	1 cut(s)	1533
XagI	CCTNNNNNAGG	2 cut(s)	1648, 2481
XapI	RAATTY	5 cut(s)	769, 1402, 1767, 2248, 2590
XceI	RCATGY	2 cut(s)	804, 2164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	1472
XspI	CTAG	4 cut(s)	438, 573, 939, 1913
ZrmI	AGTACT	2 cut(s)	589, 1105
Zsp2I	ATGCAT	4 cut(s)	802, 1908, 2242, 2308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.