Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010361

Physical Location & Seq

Genomic Coordinates Forward (+)

21568300 .. 21572022

Gene Structure 3723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0233500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAAGTAGAAGGAGGTGAGGAGGTGACATGGAGCAGAGAAACAGTTCCCAAGGTTGTGAAGATAGTGAGCACAAGACTCCCTCAGAGAGACCTCATCTCTCTCTTGCTACTCAGCCCATGGCTCAACGCTACTCTCATCTCCCACCCTTCCCTTTGGCTGCTTATCGATTTTCGTGAAATGAATAATGCTGGGAATCGCCTAATAGCTGCTCTGTCACTGCCGCGATATCGGCATGTGAAGCACATAAACCTTGAATTTGCACAAGATATTGAAGACAAACATCTTGAACTCATAAAGAACAAGTGTTTTGGTTCTCTTCAAAACCTTGAAGTTTTGAATCTGAATAGCTGCCAGAAGATTTCTGATAAGGGAGTTCAAGATATAACCAGTGCTTGTGCCAATCTGAAGGTCTTTTCTATTTATTGGAATGTGAGGGTGACAGATACAGGTATAACACACCTGGTGAAAAATTGCAAGTATATCATTGATCTGAATATAAGTGGCTGTAAGAACCTCTCAGACAAAAGTTTGCAACTGGTTGCTCAGACTTATCCAGAATTAGAGTTGCTGAATCTGACAAGGTGTGTCAAGTTAACAGATTTTGGCTTGCAGCAGATATTGAACAGTTGCTCCAGTCTCCAGAGTCTCAACTTATATGCCCTGTCTAGCTTCACTGATGAAGCTTACAAGAGGATATCACTTCTAACCCATCTTAAATTCTTGGATCTATGTGGTGCCCAGAATCTATCAGATGAAGGGCTTTCTTGTATAGCTAGATGCAAGGGCCTTCTGTCTCTCAGTTTGACATGGTGTGTACGTGTCACTGATGTGGGGGTCATAGCCATTGCAGAGAGTTGCACCTCTCTCGAATATCTCAGCTTATTTGGGATAGTTGGGGTGACCGATGCATGCCTGGATTCCCTCTCAAGGACCTGTTCGAACACAATTACTACTCTTGATGTGAATGGATGTATTGGAATTAAGAGACGGAGTCGTGATGAATTGCTTAAATTGTTTCCAAAGTTGCGGTGCTTCAAAGTGCACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

350

Amino Acids

39.16

Weight (kDa)

8.1

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	132 - 282	3.2e-14	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31400 AT2G31400
fragaria_vesca	FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040
malus_domestica	MD09G1284400.v1.1 MD17G1277600.v1.1
prunus_persica	Prupe.3G009900_v2.0.a1 Prupe.3G010400_v2.0.a1 Prupe.3G010400_v2.0.a1
pyrus_communis	pycom09g19230 pycom17g27520
rosa_chinensis	RchiOBHm_Chr3g0487361
rosa_laevigata	RLG00000023011
rosa_multiflora	Rmu_sc0001955.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394850
rosa_rugosa	Rorug03G0233500
rosa_samantha	Rh3DG313000
rosa_wichuraiana	Rw3G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	737
AccII	CGCG	1 cut(s)	226
AciI	CCGC	2 cut(s)	224, 1030
AclWI	GGATC	1 cut(s)	735
AcsI	RAATTY	2 cut(s)	257, 719
AcuI	CTGAAG	1 cut(s)	428
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	819
AfiI	CCNNNNNNNGG	1 cut(s)	930
AflIII	ACRYGT	1 cut(s)	820
AgsI	TTSAA	9 cut(s)	257, 275, 290, 323, 332, 340, 380, 625, 1039
AjnI	CCWGG	2 cut(s)	462, 915
AleI	CACNNNNGTG	1 cut(s)	830
AloI	GAACNNNNNNTCC	2 cut(s)	617, 649
AluBI	AGCT	7 cut(s)	209, 351, 672, 686, 776, 882, 1050
AluI	AGCT	7 cut(s)	209, 351, 672, 686, 776, 882, 1050
Alw21I	GWGCWC	2 cut(s)	74, 1047
Alw26I	GTCTC	5 cut(s)	84, 644, 653, 801, 982
Alw44I	GTGCAC	1 cut(s)	1043
AlwI	GGATC	1 cut(s)	735
AoxI	GGCC	1 cut(s)	787
ApaLI	GTGCAC	1 cut(s)	1043
ApeKI	GCWGC	4 cut(s)	160, 209, 351, 613
ApoI	RAATTY	2 cut(s)	257, 719
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	787, 933
AsuHPI	GGTGA	5 cut(s)	29, 37, 451, 478, 913
AsuII	TTCGAA	1 cut(s)	941
AvaII	GGWCC	1 cut(s)	933
BaeGI	GKGCMC	2 cut(s)	742, 1047
BanI	GGYRCC	1 cut(s)	737
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	74, 1047
BbvI	GCAGC	4 cut(s)	147, 196, 338, 625
BccI	CCATC	1 cut(s)	720
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BciT130I	CCWGG	2 cut(s)	464, 917
BcoDI	GTCTC	5 cut(s)	84, 644, 653, 801, 982
BfaI	CTAG	2 cut(s)	669, 777
BisI	GCNGC	5 cut(s)	161, 210, 224, 352, 614
BlsI	GCNGC	5 cut(s)	162, 211, 225, 353, 615
Bme1390I	CCNGG	2 cut(s)	464, 917
Bme18I	GGWCC	1 cut(s)	933
BmgT120I	GGNCC	2 cut(s)	787, 933
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	2 cut(s)	464, 917
BmsI	GCATC	2 cut(s)	770, 898
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	2 cut(s)	619, 626
Bpu14I	TTCGAA	1 cut(s)	941
BpuEI	CTTGAG	1 cut(s)	913
Bsa29I	ATCGAT	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	821
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	51, 119
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	930
Bse1I	ACTGG	3 cut(s)	390, 543, 636
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	464, 917
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	51, 119
BseGI	GGATG	1 cut(s)	977
BseLI	CCNNNNNNNGG	1 cut(s)	930
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	6 cut(s)	98, 127, 534, 560, 814, 892
BseNI	ACTGG	3 cut(s)	390, 543, 636
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	2 cut(s)	742, 1047
BseXI	GCAGC	4 cut(s)	147, 196, 338, 625
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	789
BshNI	GGYRCC	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	2 cut(s)	74, 1047
BslI	CCNNNNNNNGG	1 cut(s)	930
BsmAI	GTCTC	5 cut(s)	84, 644, 653, 801, 982
BsmBI	CGTCTC	1 cut(s)	982
BsnI	GGCC	1 cut(s)	789
Bso31I	GGTCTC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	941
Bsp1286I	GDGCHC	3 cut(s)	74, 742, 1047
Bsp143I	GATC	2 cut(s)	490, 727
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	224, 1030
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	6 cut(s)	97, 126, 533, 559, 813, 891
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	941
BspT107I	GGYRCC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	390, 543, 636
BssECI	CCNNGG	2 cut(s)	51, 119
BssMI	GATC	2 cut(s)	490, 727
BssT1I	CCWWGG	2 cut(s)	51, 119
Bst2UI	CCWGG	2 cut(s)	464, 917
Bst4CI	ACNGT	2 cut(s)	46, 629
Bst6I	CTCTTC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	611, 913
BstDEI	CTNAG	6 cut(s)	84, 113, 520, 546, 800, 878
BstDSI	CCRYGG	1 cut(s)	119
BstEII	GGTNACC	1 cut(s)	901
BstF5I	GGATG	1 cut(s)	977
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	493, 730
BstMAI	GTCTC	5 cut(s)	84, 644, 653, 801, 982
BstMBI	GATC	2 cut(s)	490, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 241
BstNI	CCWGG	2 cut(s)	464, 917
BstNSI	RCATGY	2 cut(s)	239, 915
BstPI	GGTNACC	1 cut(s)	901
BstSCI	CCNGG	2 cut(s)	462, 915
BstSLI	GKGCMC	2 cut(s)	742, 1047
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	4 cut(s)	147, 196, 338, 625
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	789
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	977
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	4 cut(s)	218, 397, 675, 825
Cac8I	GCNNGC	2 cut(s)	611, 913
Cfr13I	GGNCC	2 cut(s)	787, 933
ClaI	ATCGAT	1 cut(s)	168
CsiI	ACCWGGT	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	818
CviAII	CATG	5 cut(s)	30, 120, 236, 810, 912
CviQI	GTAC	1 cut(s)	818
DdeI	CTNAG	6 cut(s)	84, 113, 520, 546, 800, 878
DpnI	GATC	2 cut(s)	492, 729
DpnII	GATC	2 cut(s)	490, 727
DraIII	CACNNNGTG	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	51, 119
Eco31I	GGTCTC	1 cut(s)	84
Eco32I	GATATC	2 cut(s)	230, 699
Eco47I	GGWCC	1 cut(s)	933
Eco57I	CTGAAG	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	901
EcoO109I	RGGNCCY	2 cut(s)	787, 933
EcoO65I	GGTNACC	1 cut(s)	901
EcoRII	CCWGG	2 cut(s)	462, 915
EcoRV	GATATC	2 cut(s)	230, 699
EcoT14I	CCWWGG	2 cut(s)	51, 119
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	2 cut(s)	51, 119
Esp3I	CGTCTC	1 cut(s)	982
FaeI	CATG	5 cut(s)	33, 123, 239, 813, 915
FatI	CATG	5 cut(s)	29, 119, 235, 809, 911
Fnu4HI	GCNGC	5 cut(s)	161, 210, 224, 352, 614
FokI	GGATG	1 cut(s)	984
Fsp4HI	GCNGC	5 cut(s)	161, 210, 224, 352, 614
FspBI	CTAG	2 cut(s)	669, 777
GluI	GCNGC	5 cut(s)	161, 210, 224, 352, 614
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	2 cut(s)	619, 626
HaeIII	GGCC	1 cut(s)	789
Hin1II	CATG	5 cut(s)	33, 123, 239, 813, 915
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	8 cut(s)	78, 196, 340, 574, 646, 745, 920, 994
HpaI	GTTAAC	1 cut(s)	597
HphI	GGTGA	5 cut(s)	29, 37, 451, 478, 913
Hpy166II	GTNNAC	3 cut(s)	597, 818, 1045
Hpy188I	TCNGA	9 cut(s)	87, 345, 367, 408, 495, 523, 549, 579, 754
Hpy188III	TCNNGA	8 cut(s)	176, 287, 380, 557, 643, 869, 959, 998
Hpy8I	GTNNAC	3 cut(s)	597, 818, 1045
HpyAV	CCTTC	5 cut(s)	5, 159, 403, 752, 800
HpyCH4III	ACNGT	2 cut(s)	46, 629
HpyCH4IV	ACGT	1 cut(s)	820
HpyCH4V	TGCA	9 cut(s)	263, 477, 535, 613, 783, 851, 861, 911, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 241
HpyF3I	CTNAG	6 cut(s)	84, 113, 520, 546, 800, 878
HpySE526I	ACGT	1 cut(s)	820
Hsp92II	CATG	5 cut(s)	33, 123, 239, 813, 915
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	490, 727
LmnI	GCTCC	2 cut(s)	33, 638
Lsp1109I	GCAGC	4 cut(s)	147, 196, 338, 625
LweI	GCATC	2 cut(s)	770, 898
MabI	ACCWGGT	1 cut(s)	462
MaeI	CTAG	2 cut(s)	669, 777
MaeII	ACGT	1 cut(s)	820
MaeIII	GTNAC	5 cut(s)	25, 216, 439, 823, 901
MalI	GATC	2 cut(s)	492, 729
MboI	GATC	2 cut(s)	490, 727
MboII	GAAGA	4 cut(s)	73, 287, 311, 370
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	3 cut(s)	74, 742, 1047
MluCI	AATT	8 cut(s)	257, 472, 560, 719, 948, 981, 1004, 1013
MlyI	GAGTC	3 cut(s)	72, 655, 1003
Mph1103I	ATGCAT	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	4 cut(s)	596, 717, 984, 1011
MslI	CAYNNNNRTG	1 cut(s)	830
MspR9I	CCNGG	2 cut(s)	464, 917
MvaI	CCWGG	2 cut(s)	464, 917
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	232, 241
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	490, 727
NlaIII	CATG	5 cut(s)	33, 123, 239, 813, 915
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	5 cut(s)	25, 216, 439, 823, 901
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	2 cut(s)	239, 915
NspV	TTCGAA	1 cut(s)	941
OliI	CACNNNNGTG	1 cut(s)	830
PaeI	GCATGC	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	5 cut(s)	196, 340, 574, 745, 920
PflFI	GACNNNGTC	1 cut(s)	993
PkrI	GCNGC	5 cut(s)	162, 211, 225, 353, 615
PleI	GAGTC	3 cut(s)	72, 654, 1002
PpsI	GAGTC	3 cut(s)	72, 654, 1002
Ppu21I	YACGTR	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	933
Psp5II	RGGWCCY	1 cut(s)	933
Psp6I	CCWGG	2 cut(s)	462, 915
PspEI	GGTNACC	1 cut(s)	901
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	462, 915
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	2 cut(s)	787, 933
PspPPI	RGGWCCY	1 cut(s)	933
PsuI	RGATCY	1 cut(s)	727
PsyI	GACNNNGTC	1 cut(s)	993
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
RseI	CAYNNNNRTG	1 cut(s)	830
SaqAI	TTAA	4 cut(s)	596, 717, 984, 1011
SatI	GCNGC	5 cut(s)	161, 210, 224, 352, 614
Sau3AI	GATC	2 cut(s)	490, 727
Sau96I	GGNCC	2 cut(s)	787, 933
SchI	GAGTC	3 cut(s)	72, 655, 1003
ScrFI	CCNGG	2 cut(s)	464, 917
SduI	GDGCHC	3 cut(s)	74, 742, 1047
SexAI	ACCWGGT	1 cut(s)	462
SfaNI	GCATC	2 cut(s)	770, 898
SfuI	TTCGAA	1 cut(s)	941
SinI	GGWCC	1 cut(s)	933
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
SphI	GCATGC	1 cut(s)	915
Sse9I	AATT	8 cut(s)	257, 472, 560, 719, 948, 981, 1004, 1013
SsiI	CCGC	2 cut(s)	224, 1030
SspMI	CTAG	2 cut(s)	669, 777
StyD4I	CCNGG	2 cut(s)	462, 915
StyI	CCWWGG	2 cut(s)	51, 119
TaaI	ACNGT	2 cut(s)	46, 629
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	3 cut(s)	168, 870, 941
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	8 cut(s)	257, 472, 560, 719, 948, 981, 1004, 1013
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	5 cut(s)	196, 340, 574, 745, 920
Tru1I	TTAA	4 cut(s)	596, 717, 984, 1011
Tru9I	TTAA	4 cut(s)	596, 717, 984, 1011
TscAI	CASTG	4 cut(s)	225, 397, 682, 832
TseFI	GTSAC	5 cut(s)	25, 216, 439, 823, 901
TseI	GCWGC	4 cut(s)	160, 209, 351, 613
Tsp45I	GTSAC	5 cut(s)	25, 216, 439, 823, 901
TspDTI	ATGAA	4 cut(s)	197, 696, 771, 1017
TspGWI	ACGGA	1 cut(s)	1006
TspRI	CASTG	4 cut(s)	225, 397, 682, 832
Tth111I	GACNNNGTC	1 cut(s)	993
VneI	GTGCAC	1 cut(s)	1043
VpaK11BI	GGWCC	1 cut(s)	933
XapI	RAATTY	2 cut(s)	257, 719
XceI	RCATGY	2 cut(s)	239, 915
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	2 cut(s)	669, 777
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.