Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010361

Physical Location & Seq

Genomic Coordinates Forward (+)

34586010 .. 34590061

Gene Structure 4052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGGCGTCAACGCCGCCGCACTGTTCAATCACAGCGACCAAGCCGTACCAAACCCACCAATACCCACAAAACCAGCGCCTCAAATCTCAGCGGCAGACCCGTCAGAGCAACCAATGGACCACCCGCCACGTCTCTCTCTCAAAGCCTCTACCTTTACCCCCGCAACCGCCGCGCACGGCGGCGAAACCCGCCGCCGCCGCCGCCGCTCCCGGTCCGACCTCCTTTTCCTCTCTCTGCCCTCCGTCCAAGTCCGACCTCGTCGCCGCCTTCTCGGGCCGCCGCTCGACCCGGTTCGTGTCCAAAATGCACTTCGGCCGGCCCAAAACCACGGTGGGGTCCCGCCACTCCTCGCTGGCGGAGGAGGCCCTGCAGAGCGCAATCCGGTTCGGTAAGGACGATTTGGCCCTTGATGATGTTTTGCTTAGTTTCGAGTCTAAGCTTTGTGGGTCGGATGATTACACTTTTTTGCTTAGAGAGCTTGGGAATAGAGGTGAGTGTTGGAAGGCTATAAGGTGTTTCGAGTTTGCGGTGAGGAGGGAGAGAAGGAGAACTGAGCAGGGGAAATTAGCTAGCTCTATGATTAGTACTCTTGGTAGGTTGGGAAAGGTTGAGCTTGCCAAGAATGTGTTTCAGACTGCTGTCAATGAGGGCTATGGCAAGACTGTTTATACCTATTCGGCTTTGATTAGTGCTTATGGGCGCAGCGGGTATTGCGATGAGGCTATTCGAGTGCTCGAGTCCATGAAAGATTCGGGCTTGAAGCCGAATTTGGTTACTTACAATGCGGTGATTGATGCATGTGGAAAAGGGGGAGTGGAGTTTAAGAAGGTAGTGGAGATTTTCAATGAGATGCTTAAAATTGGGGTGCAGCCTGATCGAATTACTTATAATTCTCTCCTTGCGGTTTGTAGTCGAGGGGGACTGTGGGAGGCGGCTAGAAACTTGTTCAGTGAGATGGTGGATAGAGGGATTGATCAGGATATTTATACCTATAATACACTTTTGGATGCAATTTCTAAAGGTGGGCAGATGGATTTGGCATATCAGATTATGTCGGAGATGCCTTCAAAGAATATTTTGCCTAATGTGGTGACTTATAGTACTATGATCGATGGTTATGCTAAGGCTGGTAGATTAGAAGATGCACTAAGTTTATTTCATGAAATGAAGTTTTTGGCCGTTGGTCTGGATAGAGTTCTGTATAATACATTGCTGTCACTTTACGGGAAGCTTGGCAGGTTTGCAGAGGCTTTGAATGTTTGCAAGGAGATGGAGAGTGTTGGGATTGTGAAGGACGTTGTATCTTATAATGCGCTTCTTGGTGGGTATGGGAAGCAAGGCAAGTATGATCAAGTTAAAGCACTGTACAATGAAATGAAAGAAGAACGTGTATCACCAAATTTATTAACTTATTCAACATTGATCGATGTGTATTCAAAAGGTGGTTTGTATGTGGAGGCAATGAAAGTTTTCAGAGAGTTTAAGCAGGCAGGGCTGAAGGCTGATGTTGTTCTCTATAGTGAACTTATTAATGCTTTGTGCAAAAGTGGGCTGGTGGAATCTGCTGTTTCATTGCTTGATGAGATGACCAAGGAAGGCATCCGACCTAATGTTGTCACTTATAATTCTATAATTGATGCCTTTGGTAGGCCAGCGACAACAGAGTGTGCAGTTGGTGCTGGAGGCATTGTGCTACACAATGAATCTTCATCTTCAATTTCTGAAAGGGATGTTGACATTTCTGAAGAGAATGTTCAAATTCAGGTGAGAGATATGGAGGATACCAGAATTATAAAGATGTTTGGGCAGCTTGCAGCTGATAAAGCTGGTTATGCAGAGAAAGATAGGAAGGTTAGACAAGAAATCTTGTGCATTTTGGGTGTCGTTCAGAAGATGCATGAGCTAGACATCAAACCGAATGTCGTCACATTTTCAGCCATTCTAAATGCTTGCAGCCGCTGTAATTCATTTGAAGATGCTTCCATGTTATTGGAGGAATTGCGGTTGTTTGATAACCAGGTTTATGGTGTTGCCCATGGACTTCTTATGGGCTACAGGGGTAGTGTATGGGTTAAAGCTCAGTCCCTGTTTGATGAAGTTAAGCAGATGGACTGTTCAACTGCATCTGCATTCTACAATGCTCTTACCGACATGCTATGGCACTTTGGACAGAAACAAGGGGCGCAACTGGTTGTGCTTGAAGGGAAGCGTCGAAATGTATGGGAGAATGCATGGGAGAATTCACAGTTAGATTTGCATTTGATGTCTTCTGGGGCTGCCCGAGCAATGGTTCATGCATGGTTGCTCAATATACACTCTATAGTGTATAAGGGCCAACAATTGCCAAACCTATTAAGCATTTTGACAGGATGGGGCAAGCACAGCAAAGTAGTAGGCGAAAGTGCCTTAAGACGAGCAATCGAGGCACTTCTTACCGGCATGGGTGCACCCTTTCAGGTTGCCAAGCCTAACAAAGGTAGGTTTATTTCGACGGGATCTGTGGCTGCTGCATGGTTAAAAGAATCTGGCACACTGGAGGTGCTCAAGCTTCATGATGATAGGGCCGATCCAAATAGTGCAAATTTTGGCCAAATATCCAATTTACGAGCGCTCGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

873

Amino Acids

96.44

Weight (kDa)

8.7

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	193 - 284	4.7e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	209 - 269	6.9e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	221 - 269	3.4e-13	PPR repeat family
PPR_1	PF12854	221 - 249	4e-06	PPR repeat
PPR	PF01535	223 - 253	7.2e-08	PPR repeat
PPR_long	PF17177	264 - 413	5.6e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	294 - 339	1.4e-11	PPR repeat family
PPR	PF01535	294 - 324	1.4e-06	PPR repeat
PPR_long	PF17177	301 - 452	1.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	315 - 373	1.3e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	327 - 375	5e-16	PPR repeat family
PPR_3	PF13812	350 - 410	3.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	357 - 390	2.7e-13	PPR repeat
PPR_2	PF13041	361 - 391	7.6e-10	PPR repeat family
PPR	PF01535	364 - 390	7e-10	PPR repeat
PPR_3	PF13812	384 - 445	2e-07	Pentatricopeptide repeat domain
PPR	PF01535	399 - 429	9.2e-06	PPR repeat
PPR_3	PF13812	420 - 479	5.8e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	431 - 479	8.5e-16	PPR repeat family
PPR	PF01535	434 - 463	5.7e-07	PPR repeat
PPR_long	PF17177	454 - 558	9.6e-06	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	470 - 499	3.3e-06	PPR repeat
TPR_24	PF23276	487 - 550	2.5e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	489 - 549	3.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	498 - 530	2.5e-09	PPR repeat
PPR_2	PF13041	502 - 549	1.6e-15	PPR repeat family
PPR	PF01535	504 - 534	1.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31400 AT2G31400
fragaria_vesca	FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040
malus_domestica	MD09G1284400.v1.1 MD17G1277600.v1.1
prunus_persica	Prupe.3G009900_v2.0.a1 Prupe.3G010400_v2.0.a1 Prupe.3G010400_v2.0.a1
pyrus_communis	pycom09g19230 pycom17g27520
rosa_chinensis	RchiOBHm_Chr3g0487361
rosa_laevigata	RLG00000023011
rosa_multiflora	Rmu_sc0001955.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394850
rosa_rugosa	Rorug03G0233500
rosa_samantha	Rh3DG313000
rosa_wichuraiana	Rw3G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	888, 1308, 1623, 1793
Acc36I	ACCTGC	1 cut(s)	1227
AccBSI	CCGCTC	2 cut(s)	206, 282
AccII	CGCG	1 cut(s)	172
AclWI	GGATC	2 cut(s)	2503, 2561
AcoI	YGGCCR	3 cut(s)	313, 1176, 2587
AcsI	RAATTY	5 cut(s)	766, 1399, 1758, 2239, 2581
AcuI	CTGAAG	2 cut(s)	1517, 1764
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	47, 586, 1102, 1367
AfeI	AGCGCT	1 cut(s)	2610
AfiI	CCNNNNNNNGG	4 cut(s)	333, 1647, 2287, 2474
AflII	CTTAAG	1 cut(s)	2407
AflIII	ACRYGT	1 cut(s)	1387
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	2016
AjuI	GAANNNNNNNTTGG	4 cut(s)	293, 325, 752, 784
Alw21I	GWGCWC	3 cut(s)	735, 2449, 2544
Alw26I	GTCTC	1 cut(s)	136
Alw44I	GTGCAC	1 cut(s)	2445
AlwI	GGATC	2 cut(s)	2503, 2561
AlwNI	CAGNNNCTG	2 cut(s)	1959, 2086
Ama87I	CYCGRG	3 cut(s)	271, 734, 2280
Aor51HI	AGCGCT	1 cut(s)	2610
ApaLI	GTGCAC	1 cut(s)	2445
ApeKI	GCWGC	8 cut(s)	702, 868, 1807, 1814, 1953, 2276, 2504, 2507
ApoI	RAATTY	5 cut(s)	766, 1399, 1758, 2239, 2581
ArsI	GACNNNNNNTTYG	2 cut(s)	1905, 1937
AseI	ATTAAT	1 cut(s)	1530
Asp700I	GAANNNNTTC	1 cut(s)	1469
AspLEI	GCGC	7 cut(s)	78, 174, 377, 702, 1315, 2185, 2611
AspS9I	GGNCC	9 cut(s)	117, 212, 274, 318, 336, 364, 403, 2332, 2562
AsuC2I	CCSGG	2 cut(s)	210, 289
AsuHPI	GGTGA	6 cut(s)	503, 541, 799, 1102, 1386, 1777
AsuNHI	GCTAGC	1 cut(s)	569
AvaI	CYCGRG	3 cut(s)	271, 734, 2280
AvaII	GGWCC	3 cut(s)	117, 212, 336
BaeGI	GKGCMC	1 cut(s)	2449
BalI	TGGCCA	1 cut(s)	2589
BbsI	GAAGAC	1 cut(s)	2259
Bbv12I	GWGCWC	3 cut(s)	735, 2449, 2544
BbvI	GCAGC	8 cut(s)	714, 880, 1819, 1826, 1965, 2263, 2491, 2494
BccI	CCATC	6 cut(s)	949, 1024, 1106, 1264, 2101, 2364
BceAI	ACGGC	3 cut(s)	28, 192, 1163
BcgI	CGANNNNNNTGC	4 cut(s)	857, 891, 1100, 1134
BciT130I	CCWGG	1 cut(s)	2018
BciVI	GTATCC	1 cut(s)	1774
BclI	TGATCA	2 cut(s)	973, 1348
BcnI	CCSGG	2 cut(s)	210, 289
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	570, 936, 1904
BfmI	CTRYAG	4 cut(s)	368, 1516, 2053, 2319
BfoI	RGCGCY	2 cut(s)	79, 2612
BfrI	CTTAAG	1 cut(s)	2407
BfuAI	ACCTGC	1 cut(s)	1227
BfuI	GTATCC	1 cut(s)	1774
BmcAI	AGTACT	2 cut(s)	586, 1102
Bme1390I	CCNGG	3 cut(s)	210, 289, 2018
Bme18I	GGWCC	3 cut(s)	117, 212, 336
BmeT110I	CYCGRG	3 cut(s)	271, 734, 2280
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	9 cut(s)	117, 212, 274, 318, 336, 364, 403, 2332, 2562
BmiI	GGNNCC	2 cut(s)	337, 338
BmrFI	CCNGG	3 cut(s)	210, 289, 2018
BmtI	GCTAGC	1 cut(s)	573
BoxI	GACNNNNGTC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	2259
BpmI	CTGGAG	2 cut(s)	1701, 2555
Bpu10I	CCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	2528
BpuMI	CCSGG	2 cut(s)	210, 289
Bsa29I	ATCGAT	2 cut(s)	1110, 1425
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	327, 1590, 2035
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	1674, 1704
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 1647, 2287, 2474
Bse118I	RCCGGY	2 cut(s)	315, 2435
Bse1I	ACTGG	2 cut(s)	2193, 2538
Bse3DI	GCAATG	4 cut(s)	1208, 1467, 1571, 2292
BseBI	CCWGG	1 cut(s)	2018
BseCI	ATCGAT	2 cut(s)	1110, 1425
BseDI	CCNNGG	3 cut(s)	327, 1590, 2035
BseGI	GGATG	5 cut(s)	457, 1012, 1599, 1735, 2375
BseLI	CCNNNNNNNGG	4 cut(s)	333, 1647, 2287, 2474
BseMI	GCAATG	4 cut(s)	1208, 1467, 1571, 2292
BseMII	CTCAG	3 cut(s)	101, 543, 2093
BseNI	ACTGG	2 cut(s)	2193, 2538
BseRI	GAGGAG	3 cut(s)	337, 374, 547
BseSI	GKGCMC	1 cut(s)	2449
BseX3I	CGGCCG	1 cut(s)	313
BseXI	GCAGC	8 cut(s)	714, 880, 1819, 1826, 1965, 2263, 2491, 2494
BsgI	GTGCAG	2 cut(s)	887, 1689
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	316
BshVI	ATCGAT	2 cut(s)	1110, 1425
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	3 cut(s)	735, 2449, 2544
BsiHKCI	CYCGRG	3 cut(s)	271, 734, 2280
BsiSI	CCGG	5 cut(s)	210, 289, 316, 382, 2436
BslFI	GGGAC	3 cut(s)	322, 933, 2068
BslI	CCNNNNNNNGG	4 cut(s)	333, 1647, 2287, 2474
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	3 cut(s)	322, 933, 2068
BsmI	GAATGC	2 cut(s)	2129, 2233
BsoBI	CYCGRG	3 cut(s)	271, 734, 2280
Bsp1286I	GDGCHC	3 cut(s)	735, 2449, 2544
Bsp1407I	TGTACA	1 cut(s)	1365
Bsp143I	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
Bsp19I	CCATGG	1 cut(s)	2035
BspCNI	CTCAG	3 cut(s)	100, 544, 2092
BspDI	ATCGAT	2 cut(s)	1110, 1425
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	2 cut(s)	1159, 2551
BspLI	GGNNCC	2 cut(s)	337, 338
BspMAI	CTGCAG	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	1227
BspOI	GCTAGC	1 cut(s)	573
BspPI	GGATC	2 cut(s)	2503, 2561
BspTI	CTTAAG	1 cut(s)	2407
BsrBI	CCGCTC	2 cut(s)	206, 282
BsrDI	GCAATG	4 cut(s)	1208, 1467, 1571, 2292
BsrFI	RCCGGY	2 cut(s)	315, 2435
BsrGI	TGTACA	1 cut(s)	1365
BsrI	ACTGG	2 cut(s)	2193, 2538
BssAI	RCCGGY	2 cut(s)	315, 2435
BssECI	CCNNGG	3 cut(s)	327, 1590, 2035
BssMI	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	1590, 2035
Bst2UI	CCWGG	1 cut(s)	2018
Bst4CI	ACNGT	7 cut(s)	23, 331, 664, 924, 1365, 2114, 2247
Bst6I	CTCTTC	1 cut(s)	1740
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	2407
BstAPI	GCANNNNNTGC	1 cut(s)	1676
BstAUI	TGTACA	1 cut(s)	1365
BstDEI	CTNAG	8 cut(s)	87, 422, 435, 470, 552, 1122, 1148, 2079
BstDSI	CCRYGG	2 cut(s)	327, 2035
BstENI	CCTNNNNNAGG	2 cut(s)	1645, 2472
BstF5I	GGATG	5 cut(s)	457, 1012, 1599, 1735, 2375
BstFNI	CGCG	1 cut(s)	172
BstH2I	RGCGCY	2 cut(s)	79, 2612
BstHHI	GCGC	7 cut(s)	78, 174, 377, 702, 1315, 2185, 2611
BstKTI	GATC	7 cut(s)	877, 976, 1110, 1351, 1425, 2498, 2569
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
BstMCI	CGRYCG	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	2018
BstNSI	RCATGY	2 cut(s)	801, 2155
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	208, 287, 2016
BstSFI	CTRYAG	4 cut(s)	368, 1516, 2053, 2319
BstSLI	GKGCMC	1 cut(s)	2449
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	8 cut(s)	714, 880, 1819, 1826, 1965, 2263, 2491, 2494
BstV2I	GAAGAC	1 cut(s)	2259
BstX2I	RGATCY	1 cut(s)	2495
BstXI	CCANNNNNNTGG	2 cut(s)	1990, 2024
BstYI	RGATCY	1 cut(s)	2495
BstZI	CGGCCG	1 cut(s)	313
Bsu15I	ATCGAT	2 cut(s)	1110, 1425
BsuI	GTATCC	1 cut(s)	1774
BsuTUI	ATCGAT	2 cut(s)	1110, 1425
BtgI	CCRYGG	2 cut(s)	327, 2035
BtgZI	GCGATG	1 cut(s)	729
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	5 cut(s)	457, 1012, 1599, 1735, 2375
BtsIMutI	CAGTG	4 cut(s)	19, 955, 1361, 2531
BveI	ACCTGC	1 cut(s)	1227
CaiI	CAGNNNCTG	2 cut(s)	1959, 2086
CciI	TCATGA	2 cut(s)	1159, 2551
CfoI	GCGC	7 cut(s)	78, 174, 377, 702, 1315, 2185, 2611
Cfr10I	RCCGGY	2 cut(s)	315, 2435
Cfr13I	GGNCC	9 cut(s)	117, 212, 274, 318, 336, 364, 403, 2332, 2562
ClaI	ATCGAT	2 cut(s)	1110, 1425
CpoI	CGGWCCG	1 cut(s)	212
CseI	GACGC	1 cut(s)	2198
CsiI	ACCWGGT	1 cut(s)	2016
Csp6I	GTAC	4 cut(s)	46, 585, 1101, 1366
CspI	CGGWCCG	1 cut(s)	212
CviQI	GTAC	4 cut(s)	46, 585, 1101, 1366
DdeI	CTNAG	8 cut(s)	87, 422, 435, 470, 552, 1122, 1148, 2079
DpnI	GATC	7 cut(s)	876, 975, 1109, 1350, 1424, 2497, 2568
DpnII	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
EaeI	YGGCCR	3 cut(s)	313, 1176, 2587
EagI	CGGCCG	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	1740
EarI	CTCTTC	1 cut(s)	1740
EciI	GGCGGA	1 cut(s)	371
EclXI	CGGCCG	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	1590, 2035
Eco47I	GGWCC	3 cut(s)	117, 212, 336
Eco47III	AGCGCT	1 cut(s)	2610
Eco52I	CGGCCG	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	1517, 1764
Eco88I	CYCGRG	3 cut(s)	271, 734, 2280
EcoNI	CCTNNNNNAGG	2 cut(s)	1645, 2472
EcoO109I	RGGNCCY	2 cut(s)	336, 364
EcoRI	GAATTC	1 cut(s)	2239
EcoRII	CCWGG	1 cut(s)	2016
EcoT14I	CCWWGG	2 cut(s)	1590, 2035
EcoT22I	ATGCAT	4 cut(s)	799, 1899, 2233, 2299
ErhI	CCWWGG	2 cut(s)	1590, 2035
Esp3I	CGTCTC	1 cut(s)	136
FaqI	GGGAC	3 cut(s)	322, 933, 2068
FauI	CCCGC	5 cut(s)	131, 168, 196, 347, 698
FbaI	TGATCA	2 cut(s)	973, 1348
FokI	GGATG	5 cut(s)	464, 1019, 1586, 1742, 2382
FseI	GGCCGGCC	1 cut(s)	319
FspBI	CTAG	3 cut(s)	570, 936, 1904
GlaI	GCGC	7 cut(s)	77, 173, 376, 701, 1314, 2184, 2610
GsuI	CTGGAG	2 cut(s)	1701, 2555
HaeII	RGCGCY	2 cut(s)	79, 2612
HapII	CCGG	5 cut(s)	210, 289, 316, 382, 2436
HgaI	GACGC	1 cut(s)	2198
HhaI	GCGC	7 cut(s)	78, 174, 377, 702, 1315, 2185, 2611
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	7 cut(s)	76, 172, 375, 700, 1313, 2183, 2609
HinP1I	GCGC	7 cut(s)	76, 172, 375, 700, 1313, 2183, 2609
HincII	GTYRAC	2 cut(s)	9, 1735
HindII	GTYRAC	2 cut(s)	9, 1735
HindIII	AAGCTT	3 cut(s)	437, 1229, 2546
HinfI	GANTC	6 cut(s)	431, 737, 749, 1559, 1703, 2522
HpaII	CCGG	5 cut(s)	210, 289, 316, 382, 2436
HphI	GGTGA	6 cut(s)	503, 541, 799, 1102, 1386, 1777
Hpy166II	GTNNAC	4 cut(s)	9, 1523, 1735, 2447
Hpy188III	TCNNGA	4 cut(s)	977, 1160, 1187, 2552
Hpy8I	GTNNAC	4 cut(s)	9, 1523, 1735, 2447
Hpy99I	CGWCG	3 cut(s)	263, 2214, 2494
HpyCH4III	ACNGT	7 cut(s)	23, 331, 664, 924, 1365, 2114, 2247
HpyCH4IV	ACGT	3 cut(s)	129, 1296, 1387
HpyF3I	CTNAG	8 cut(s)	87, 422, 435, 470, 552, 1122, 1148, 2079
HpySE526I	ACGT	3 cut(s)	129, 1296, 1387
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	7 cut(s)	76, 172, 375, 700, 1313, 2183, 2609
KflI	GGGWCCC	1 cut(s)	336
KroI	GCCGGC	1 cut(s)	315
KroNI	GCCGGC	1 cut(s)	317
Ksp22I	TGATCA	2 cut(s)	973, 1348
Kzo9I	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	8 cut(s)	714, 880, 1819, 1826, 1965, 2263, 2491, 2494
MabI	ACCWGGT	1 cut(s)	2016
MaeI	CTAG	3 cut(s)	570, 936, 1904
MaeII	ACGT	3 cut(s)	129, 1296, 1387
MaeIII	GTNAC	5 cut(s)	772, 1090, 1215, 1615, 1924
MalI	GATC	7 cut(s)	876, 975, 1109, 1350, 1424, 2497, 2568
MbiI	CCGCTC	2 cut(s)	206, 282
MboI	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
MboII	GAAGA	8 cut(s)	1151, 1394, 1698, 1704, 1757, 1903, 1985, 2259
MfeI	CAATTG	1 cut(s)	2339
MflI	RGATCY	1 cut(s)	2495
MhlI	GDGCHC	3 cut(s)	735, 2449, 2544
MlsI	TGGCCA	1 cut(s)	2589
MluNI	TGGCCA	1 cut(s)	2589
MlyI	GAGTC	2 cut(s)	440, 746
MmeI	TCCRAC	6 cut(s)	239, 276, 429, 479, 1035, 1627
Mox20I	TGGCCA	1 cut(s)	2589
Mph1103I	ATGCAT	4 cut(s)	799, 1899, 2233, 2299
MroNI	GCCGGC	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	1469
MscI	TGGCCA	1 cut(s)	2589
Msp20I	TGGCCA	1 cut(s)	2589
MspA1I	CMGCKG	4 cut(s)	91, 705, 1817, 1959
MspCI	CTTAAG	1 cut(s)	2407
MspI	CCGG	5 cut(s)	210, 289, 316, 382, 2436
MspR9I	CCNGG	3 cut(s)	210, 289, 2018
MunI	CAATTG	1 cut(s)	2339
Mva1269I	GAATGC	2 cut(s)	2129, 2233
MvaI	CCWGG	1 cut(s)	2018
MvnI	CGCG	1 cut(s)	172
NaeI	GCCGGC	1 cut(s)	317
NciI	CCSGG	2 cut(s)	210, 289
NcoI	CCATGG	1 cut(s)	2035
NdeII	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
NgoMIV	GCCGGC	1 cut(s)	315
NheI	GCTAGC	1 cut(s)	569
NlaIV	GGNNCC	2 cut(s)	337, 338
NmuCI	GTSAC	4 cut(s)	1090, 1215, 1615, 1924
NsiI	ATGCAT	4 cut(s)	799, 1899, 2233, 2299
NspI	RCATGY	2 cut(s)	801, 2155
PaeR7I	CTCGAG	1 cut(s)	734
PagI	TCATGA	2 cut(s)	1159, 2551
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	2 cut(s)	2129, 2233
PdiI	GCCGGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	1469
PfeI	GAWTC	4 cut(s)	749, 1559, 1703, 2522
PflFI	GACNNNGTC	1 cut(s)	257
PleI	GAGTC	2 cut(s)	439, 745
PpsI	GAGTC	2 cut(s)	439, 745
PpuMI	RGGWCCY	1 cut(s)	336
PshAI	GACNNNNGTC	1 cut(s)	638
PshBI	ATTAAT	1 cut(s)	1530
PsiI	TTATAA	4 cut(s)	888, 1308, 1623, 1793
Psp5II	RGGWCCY	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	2016
PspGI	CCWGG	1 cut(s)	2016
PspN4I	GGNNCC	2 cut(s)	337, 338
PspPI	GGNCC	9 cut(s)	117, 212, 274, 318, 336, 364, 403, 2332, 2562
PspPPI	RGGWCCY	1 cut(s)	336
PspXI	VCTCGAGB	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	372
PstNI	CAGNNNCTG	2 cut(s)	1959, 2086
PsuI	RGATCY	1 cut(s)	2495
PsyI	GACNNNGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	1817
RigI	GGCCGGCC	1 cut(s)	319
RsaI	GTAC	4 cut(s)	47, 586, 1102, 1367
RsaNI	GTAC	4 cut(s)	46, 585, 1101, 1366
Rsr2I	CGGWCCG	1 cut(s)	212
RsrII	CGGWCCG	1 cut(s)	212
Sau3AI	GATC	7 cut(s)	874, 973, 1107, 1348, 1422, 2495, 2566
Sau96I	GGNCC	9 cut(s)	117, 212, 274, 318, 336, 364, 403, 2332, 2562
ScaI	AGTACT	2 cut(s)	586, 1102
SchI	GAGTC	2 cut(s)	440, 746
ScrFI	CCNGG	3 cut(s)	210, 289, 2018
SduI	GDGCHC	3 cut(s)	735, 2449, 2544
SexAI	ACCWGGT	1 cut(s)	2016
SfcI	CTRYAG	4 cut(s)	368, 1516, 2053, 2319
Sfr274I	CTCGAG	1 cut(s)	734
SinI	GGWCC	3 cut(s)	117, 212, 336
SlaI	CTCGAG	1 cut(s)	734
SmlI	CTYRAG	3 cut(s)	734, 2407, 2543
SmoI	CTYRAG	3 cut(s)	734, 2407, 2543
SspI	AATATT	1 cut(s)	1075
SspMI	CTAG	3 cut(s)	570, 936, 1904
StyD4I	CCNGG	3 cut(s)	208, 287, 2016
StyI	CCWWGG	2 cut(s)	1590, 2035
TaaI	ACNGT	7 cut(s)	23, 331, 664, 924, 1365, 2114, 2247
TaiI	ACGT	3 cut(s)	132, 1299, 1390
TatI	WGTACW	3 cut(s)	584, 1100, 1365
TfiI	GAWTC	4 cut(s)	749, 1559, 1703, 2522
TscAI	CASTG	4 cut(s)	26, 955, 1368, 2538
TseFI	GTSAC	4 cut(s)	1090, 1215, 1615, 1924
TseI	GCWGC	8 cut(s)	702, 868, 1807, 1814, 1953, 2276, 2504, 2507
Tsp45I	GTSAC	4 cut(s)	1090, 1215, 1615, 1924
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	4 cut(s)	26, 955, 1368, 2538
Tth111I	GACNNNGTC	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	2407
VneI	GTGCAC	1 cut(s)	2445
VpaK11BI	GGWCC	3 cut(s)	117, 212, 336
VspI	ATTAAT	1 cut(s)	1530
XagI	CCTNNNNNAGG	2 cut(s)	1645, 2472
XapI	RAATTY	5 cut(s)	766, 1399, 1758, 2239, 2581
XceI	RCATGY	2 cut(s)	801, 2155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XhoI	CTCGAG	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	1469
XspI	CTAG	3 cut(s)	570, 936, 1904
ZrmI	AGTACT	2 cut(s)	586, 1102
Zsp2I	ATGCAT	4 cut(s)	799, 1899, 2233, 2299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.