Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010361

Physical Location & Seq

Genomic Coordinates Reverse (-)

33768561 .. 33770187

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1277600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGATGTTTGGGCAACTTTCAGCTGAGAAAGCAGGTTATGCAATAAAAGATAGGAAGGTTAGACAAGAAATCTTGTGCATTTTGGGAGTCTTTCAGAAGATGCACGAGCTAGACATCAAACCGAATGTTGTCACATTTTCTGCCATTTTAAATGCGTGCAGGTACATCTCTTTATCTTTCGTACATGTTGCATTGGGGACTTATTTGCTTGAAGATCTGTTAAATTGTAATTCATTTGAAGATGCTTCAATGTTATTGGAGCAACTCCGGTTGTTTGGTAACCAAGTTTATGGGGTTGTCCACGGACTTCTTATGGACTTCTTACGGACTTCTTATGCCACCTTTTCAGGCGGACGGGCGCAACTGATTGTGCATGAAGGGAAACGCCAAAACGTATGGGAGAGTGTGTGGTCTGATTCATGCTTAGATTTGCATTTAACGTCTTCTGGGGTTGCCCAGGCAATGGTCCATGTATGGTTGCTCAATATACGCGCTATAGTGTTTAAAGGCCAACAATTACCGAACCTGTTAAGCATTCTAACAGGATGGGGGAAGCACAGCAAAGTAGTAGCTGACAGTACCCTAAGACGAGCTATTGAGGCGCTTCTTACTAGCATTGGTGCACCCTTTCACGTTGCCAAGTGTAACTTGGGTAGTTTTATATCAACGAGCTCTGTGGCTGCCGCCTGGTTAAAAGAATCTGGCACACTGGAGGTGCTCGTTCTTCACGATGACAGGACTTACACAAAAGGTGCACGTTTGGACCAAATCTCCAATTTTCGAGCGCTAGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

267

Amino Acids

29.51

Weight (kDa)

8.79

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31400 AT2G31400
fragaria_vesca	FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040
malus_domestica	MD09G1284400.v1.1 MD17G1277600.v1.1
prunus_persica	Prupe.3G009900_v2.0.a1 Prupe.3G010400_v2.0.a1 Prupe.3G010400_v2.0.a1
pyrus_communis	pycom09g19230 pycom17g27520
rosa_chinensis	RchiOBHm_Chr3g0487361
rosa_laevigata	RLG00000023011
rosa_multiflora	Rmu_sc0001955.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394850
rosa_rugosa	Rorug03G0233500
rosa_samantha	Rh3DG313000
rosa_wichuraiana	Rw3G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	26, 153
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccII	CGCG	1 cut(s)	495
AciI	CCGC	2 cut(s)	354, 687
AfaI	GTAC	3 cut(s)	167, 186, 583
AfeI	AGCGCT	1 cut(s)	789
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	215, 242, 252
AjnI	CCWGG	2 cut(s)	459, 689
AluBI	AGCT	5 cut(s)	26, 112, 575, 596, 675
AluI	AGCT	5 cut(s)	26, 112, 575, 596, 675
Alw21I	GWGCWC	4 cut(s)	628, 677, 723, 760
Alw44I	GTGCAC	2 cut(s)	624, 756
Aor51HI	AGCGCT	1 cut(s)	789
AoxI	GGCC	1 cut(s)	511
ApaLI	GTGCAC	2 cut(s)	624, 756
ApeKI	GCWGC	1 cut(s)	683
AspLEI	GCGC	4 cut(s)	364, 497, 607, 790
AspS9I	GGNCC	2 cut(s)	469, 766
AsuNHI	GCTAGC	1 cut(s)	790
AvaII	GGWCC	2 cut(s)	469, 766
BaeGI	GKGCMC	2 cut(s)	628, 760
BanII	GRGCYC	1 cut(s)	677
BauI	CACGAG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	4 cut(s)	628, 677, 723, 760
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	1 cut(s)	543
BciT130I	CCWGG	2 cut(s)	461, 691
BfaI	CTAG	3 cut(s)	113, 615, 791
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	2 cut(s)	608, 791
BfuAI	ACCTGC	2 cut(s)	26, 153
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	684, 687
BlsI	GCNGC	2 cut(s)	685, 688
Bme1390I	CCNGG	2 cut(s)	461, 691
Bme18I	GGWCC	2 cut(s)	469, 766
BmgT120I	GGNCC	2 cut(s)	469, 766
BmrFI	CCNGG	2 cut(s)	461, 691
BmsI	GCATC	2 cut(s)	93, 235
BmtI	GCTAGC	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	734
BsaJI	CCNNGG	2 cut(s)	304, 459
BsaWI	WCCGGW	1 cut(s)	270
BsaXI	ACNNNNNCTCC	4 cut(s)	395, 425, 758, 788
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	717
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	461, 691
BseDI	CCNNGG	2 cut(s)	304, 459
BseGI	GGATG	1 cut(s)	554
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	717
BseSI	GKGCMC	2 cut(s)	628, 760
BseXI	GCAGC	1 cut(s)	670
BsgI	GTGCAG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	4 cut(s)	628, 677, 723, 760
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	4 cut(s)	628, 677, 723, 760
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	2 cut(s)	354, 687
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	495
BspMI	ACCTGC	2 cut(s)	26, 153
BspOI	GCTAGC	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	2 cut(s)	304, 459
BssMI	GATC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	107
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	461, 691
Bst4CI	ACNGT	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	160, 792
BstDEI	CTNAG	3 cut(s)	27, 427, 587
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	554
BstFNI	CGCG	1 cut(s)	495
BstH2I	RGCGCY	2 cut(s)	608, 791
BstHHI	GCGC	4 cut(s)	364, 497, 607, 790
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 602
BstNI	CCWGG	2 cut(s)	461, 691
BstNSI	RCATGY	1 cut(s)	191
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	459, 689
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	2 cut(s)	628, 760
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	554
BtsIMutI	CAGTG	1 cut(s)	710
BveI	ACCTGC	2 cut(s)	26, 153
Cac8I	GCNNGC	2 cut(s)	160, 792
CfoI	GCGC	4 cut(s)	364, 497, 607, 790
Cfr13I	GGNCC	2 cut(s)	469, 766
Csp6I	GTAC	3 cut(s)	166, 185, 582
CviAII	CATG	4 cut(s)	188, 377, 423, 473
CviJI	RGCY	8 cut(s)	26, 112, 513, 575, 596, 675, 683, 794
CviKI_1	RGCY	8 cut(s)	26, 112, 513, 575, 596, 675, 683, 794
CviQI	GTAC	3 cut(s)	166, 185, 582
DdeI	CTNAG	3 cut(s)	27, 427, 587
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraI	TTTAAA	2 cut(s)	153, 508
EciI	GGCGGA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	675
Eco24I	GRGCYC	1 cut(s)	677
Eco47I	GGWCC	2 cut(s)	469, 766
Eco47III	AGCGCT	1 cut(s)	789
Eco53kI	GAGCTC	1 cut(s)	675
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	675
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	459, 689
EcoT38I	GRGCYC	1 cut(s)	677
FaeI	CATG	4 cut(s)	191, 380, 426, 476
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	187, 376, 422, 472
Fnu4HI	GCNGC	2 cut(s)	684, 687
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	2 cut(s)	684, 687
FspBI	CTAG	3 cut(s)	113, 615, 791
GlaI	GCGC	4 cut(s)	363, 496, 606, 789
GluI	GCNGC	2 cut(s)	684, 687
GsuI	CTGGAG	1 cut(s)	734
HaeII	RGCGCY	2 cut(s)	608, 791
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	4 cut(s)	364, 497, 607, 790
Hin1II	CATG	4 cut(s)	191, 380, 426, 476
Hin6I	GCGC	4 cut(s)	362, 495, 605, 788
HinP1I	GCGC	4 cut(s)	362, 495, 605, 788
HinfI	GANTC	3 cut(s)	90, 419, 701
HpaII	CCGG	1 cut(s)	271
Hpy166II	GTNNAC	3 cut(s)	304, 626, 758
Hpy188I	TCNGA	2 cut(s)	99, 418
Hpy188III	TCNNGA	1 cut(s)	731
Hpy8I	GTNNAC	3 cut(s)	304, 626, 758
HpyAV	CCTTC	2 cut(s)	52, 374
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	4 cut(s)	396, 443, 636, 760
HpyCH4V	TGCA	9 cut(s)	44, 81, 106, 162, 194, 376, 436, 626, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 602
HpyF3I	CTNAG	3 cut(s)	27, 427, 587
HpySE526I	ACGT	4 cut(s)	396, 443, 636, 760
Hsp92II	CATG	4 cut(s)	191, 380, 426, 476
HspAI	GCGC	4 cut(s)	362, 495, 605, 788
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	2 cut(s)	93, 235
MaeI	CTAG	3 cut(s)	113, 615, 791
MaeII	ACGT	4 cut(s)	396, 443, 636, 760
MaeIII	GTNAC	3 cut(s)	133, 281, 647
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	6 cut(s)	16, 112, 227, 254, 438, 719
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	4 cut(s)	628, 677, 723, 760
MluCI	AATT	4 cut(s)	226, 232, 518, 778
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	595, 709
MseI	TTAA	6 cut(s)	152, 224, 440, 507, 533, 695
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	461, 691
Mva1269I	GAATGC	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	461, 691
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 602
NdeII	GATC	1 cut(s)	217
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	4 cut(s)	191, 380, 426, 476
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	191
PciI	ACATGT	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PctI	GAATGC	1 cut(s)	537
PfeI	GAWTC	2 cut(s)	419, 701
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	685, 688
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PscI	ACATGT	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	677
Psp6I	CCWGG	2 cut(s)	459, 689
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	459, 689
PspPI	GGNCC	2 cut(s)	469, 766
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	167, 186, 583
RsaNI	GTAC	3 cut(s)	166, 185, 582
SacI	GAGCTC	1 cut(s)	677
SaqAI	TTAA	6 cut(s)	152, 224, 440, 507, 533, 695
SatI	GCNGC	2 cut(s)	684, 687
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	469, 766
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	461, 691
SduI	GDGCHC	4 cut(s)	628, 677, 723, 760
SfaNI	GCATC	2 cut(s)	93, 235
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	469, 766
Sse9I	AATT	4 cut(s)	226, 232, 518, 778
SsiI	CCGC	2 cut(s)	354, 687
SspMI	CTAG	3 cut(s)	113, 615, 791
SstI	GAGCTC	1 cut(s)	677
StyD4I	CCNGG	2 cut(s)	459, 689
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	4 cut(s)	399, 446, 639, 763
TaqI	TCGA	1 cut(s)	784
TasI	AATT	4 cut(s)	226, 232, 518, 778
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	2 cut(s)	419, 701
Tru1I	TTAA	6 cut(s)	152, 224, 440, 507, 533, 695
Tru9I	TTAA	6 cut(s)	152, 224, 440, 507, 533, 695
TscAI	CASTG	1 cut(s)	717
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	17, 225, 393, 411
TspGWI	ACGGA	2 cut(s)	321, 343
TspRI	CASTG	1 cut(s)	717
Van91I	CCANNNNNTGG	1 cut(s)	466
VneI	GTGCAC	2 cut(s)	624, 756
VpaK11BI	GGWCC	2 cut(s)	469, 766
XceI	RCATGY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XspI	CTAG	3 cut(s)	113, 615, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.