Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010361

Physical Location & Seq

Genomic Coordinates Forward (+)

640927 .. 641719

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G009900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTACAATGGCTCCAACACCTCCACACTGTTCAACACAGCGACAAAGCCGTATCAAACCCACCGATACCCACAAAACCAGCACCTAAAATCTCAGCGCCAGAGCCGCCAAAGCAATCAATGGACTAAGCAACAAGTTTCTCTCCCAAAGCCTTTGCCTTTACCATCCCAAGCACCACGCACTGCCGCAAAAACACCCACTGCCACACCCATTTCCTCCTTTTCCTCTCTCTGCCCTCTCCCTCATCCAAAATCCGACCTTGTCACCCCTTTTTCGGGCCGCCGCTCCACCCGATTCGTCTCCAAAATGCACTTGGGCCGCCCCAAAACTACCATGGGATCCTACCGCTCTCCGCTTGCTGAGGAGGCCCTGCACCAAGCCGTCCAATTCGGTAACGACGATCTTGCTCTTGATGATATAAGGGTAAGGGTGTGCTATCAACTAGTGATCAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

153

Amino Acids

17.11

Weight (kDa)

10.37

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31400 AT2G31400
fragaria_vesca	FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040 FvH4_1g27040
malus_domestica	MD09G1284400.v1.1 MD17G1277600.v1.1
prunus_persica	Prupe.3G009900_v2.0.a1 Prupe.3G010400_v2.0.a1 Prupe.3G010400_v2.0.a1
pyrus_communis	pycom09g19230 pycom17g27520
rosa_chinensis	RchiOBHm_Chr3g0487361
rosa_laevigata	RLG00000023011
rosa_multiflora	Rmu_sc0001955.1_g000008
rosa_roxburghii	Rroxscaffold_6G00394850
rosa_rugosa	Rorug03G0233500
rosa_samantha	Rh3DG313000
rosa_wichuraiana	Rw3G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	285, 348
AciI	CCGC	7 cut(s)	106, 186, 280, 283, 319, 346, 353
AclWI	GGATC	2 cut(s)	333, 346
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	274, 275
AgsI	TTSAA	1 cut(s)	34
AhlI	ACTAGT	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	333, 346
AoxI	GGCC	3 cut(s)	277, 316, 366
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	3 cut(s)	277, 316, 367
AsuHPI	GGTGA	1 cut(s)	256
BamHI	GGATCC	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	2 cut(s)	34, 365
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BclI	TGATCA	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	304
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	5 cut(s)	106, 186, 280, 283, 319
BlsI	GCNGC	5 cut(s)	107, 187, 281, 284, 320
BmgT120I	GGNCC	3 cut(s)	277, 316, 367
BmiI	GGNNCC	2 cut(s)	13, 340
Bpu10I	CCTNAGC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 275
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	164, 244
BseLI	CCNNNNNNNGG	2 cut(s)	274, 275
BseMII	CTCAG	2 cut(s)	107, 351
BseRI	GAGGAG	1 cut(s)	377
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	279, 318, 368
BslI	CCNNNNNNNGG	2 cut(s)	274, 275
BsmAI	GTCTC	1 cut(s)	304
BsmBI	CGTCTC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	279, 318, 368
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	338, 400, 447
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	7 cut(s)	106, 186, 280, 283, 319, 346, 353
BspANI	GGCC	3 cut(s)	279, 318, 368
BspCNI	CTCAG	2 cut(s)	106, 352
BspLI	GGNNCC	2 cut(s)	13, 340
BspPI	GGATC	2 cut(s)	333, 346
BsrBI	CCGCTC	2 cut(s)	285, 348
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	3 cut(s)	338, 400, 447
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	93, 126, 360
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	164, 244
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	341, 403, 450
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	3 cut(s)	338, 400, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 111, 365
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	279, 318, 368
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	164, 244
BtsI	GCAGTG	2 cut(s)	180, 198
BtsIMutI	CAGTG	3 cut(s)	26, 180, 198
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	277, 316, 367
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	8 cut(s)	12, 49, 105, 151, 279, 318, 368, 380
CviKI_1	RGCY	8 cut(s)	12, 49, 105, 151, 279, 318, 368, 380
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	93, 126, 360
DpnI	GATC	3 cut(s)	340, 402, 449
DpnII	GATC	3 cut(s)	338, 400, 447
Eco130I	CCWWGG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	1 cut(s)	337
FaiI	YATR	3 cut(s)	335, 419, 457
FatI	CATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	5 cut(s)	106, 186, 280, 283, 319
FokI	GGATG	2 cut(s)	151, 231
Fsp4HI	GCNGC	5 cut(s)	106, 186, 280, 283, 319
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	5 cut(s)	106, 186, 280, 283, 319
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	279, 318, 368
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	294
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	410, 451
Hpy99I	CGWCG	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	310, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 111, 365
HpyF3I	CTNAG	3 cut(s)	93, 126, 360
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	338, 400, 447
LmnI	GCTCC	2 cut(s)	17, 290
LpnPI	CCDG	3 cut(s)	92, 113, 383
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	262, 392
MalI	GATC	3 cut(s)	340, 402, 449
MbiI	CCGCTC	2 cut(s)	285, 348
MboI	GATC	3 cut(s)	338, 400, 447
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	39, 279
MnlI	CCTC	7 cut(s)	31, 226, 235, 246, 252, 355, 358
MwoI	GCNNNNNNNGC	3 cut(s)	105, 111, 365
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	338, 400, 447
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	13, 340
NmuCI	GTSAC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	5 cut(s)	107, 187, 281, 284, 320
PspN4I	GGNNCC	2 cut(s)	13, 340
PspPI	GGNCC	3 cut(s)	277, 316, 367
PsuI	RGATCY	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	5 cut(s)	106, 186, 280, 283, 319
Sau3AI	GATC	3 cut(s)	338, 400, 447
Sau96I	GGNCC	3 cut(s)	277, 316, 367
SetI	ASST	3 cut(s)	23, 87, 261
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	7 cut(s)	106, 186, 280, 283, 319, 346, 353
SspMI	CTAG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	30
TasI	AATT	1 cut(s)	386
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	5 cut(s)	108, 188, 282, 285, 321
TfiI	GAWTC	1 cut(s)	294
TscAI	CASTG	3 cut(s)	33, 187, 205
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspRI	CASTG	3 cut(s)	33, 187, 205
Tth111I	GACNNNGTC	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 331
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.