Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003509

Physical Location & Seq

Genomic Coordinates Reverse (-)

14070833 .. 14073736

Gene Structure 2904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33205.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGAATGGATCAGCGGAAGCTACACGGACAAGACCATTGCAGATCAGTCCCGGTGATTTAGAGGCTGCTCATCTAGATGAACTCATAATGGAAATAGAACAGAGGAGTCTCTATTATTACCAAGAGAAAAACAAGTCCTTGAGAGCTCGTTATACCTACGGAACCATTTTCTTGATCATAAATCTATGCGCTTGGTTTATCCGTGACTACGCACAAAAGGCTCTGGCCTTGCTTCCATATGTCAGCAGTTGTGGACCAGAAGGAAGTCGTTGTTTCCATACGCTTGGAGTACTCCGCGTGAGTTTAGGATGTTTCATATTTTACTTTGTTATGTTCCTCTCAACATGGAACACAATGAAACTCCACGAAGCTCAAAACAGCTGGCACTCGGATAATTGGATCTTTAAGTTTTTTCTACTGGTTATAGTCATGGTAGCTTCTTTCTTCATACCTCAGCTTTACATCCAAATTTATGGAGAAATCGCTCGTGTTGGTGCAGGGATATTTCTTGGTCTGCAACTTGTAAGTGTTATCGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCAAAACCAAAGTAAGCAAAGCTGTTCTTTTGGTTTGGTCATGTCAATAGTTTTCTACATCGGTTCTGTTTGCGGGATCGCAGTGATGTACTACTTTTATGGAGCTTCTACTGCTTGTGGCCTCAATATATTCTTCATCTCATGGACTGTTATACTTTTAATCGTTATGATGGTTATTTCCTTGCATTCAAAGGTGAAGAATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGATCAGAAGCGAACCTTCACATACAAAATGCAATGCGCATACTCAAAACAGCCATACTGATTGGACTACAATACTGAGTTTCCTTATAGCTATAGGCGCCATTGTGATGGCAACATTCTCAACCGGGATCGATTCAGAATCCTTCAGGTTTCGTAAAGATGAAGCGAAAGAAGAAGACGATATACCATACAGCTATGGATTCTTCCACCTTGTGTTCTCCTTAGGAGCAATGTACTTTGCTATGTTGTTTATCAGCTGGAACCTTTCACATTCCACAGAGAAATGGAGCATTGATGTTGGATGGACAAGCACATGGGTGAAGATAGTGAACGAGTGGTTTGCCGCAGCGATTTACCTTTGGAAGTTGATTGCTCCTATTGTGAGACAGCATAGAGTTCACGAACAACCTCAGCCAACAGCAGCAGAAGTTCACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Serinc

Protein Analysis

422

Amino Acids

48.45

Weight (kDa)

7.62

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	3 - 228	4e-44	Serine incorporator (Serinc)
Serinc	PF03348	235 - 315	2.3e-20	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205
fragaria_vesca	FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470
malus_domestica	MD13G1230200.v1.1
prunus_persica	Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396601 RchiOBHm_Chr4g0421091
rosa_laevigata	RLG00000009517
rosa_multiflora	Rmu_sc0006586.1_g000024 Rmu_sc0010969.1_g000002
rosa_roxburghii	Rroxscaffold_5G00341460
rosa_rugosa	Rorug03G0348500
rosa_samantha	Rh2CG182400 Rh4AG070700 Rh4BG068600 Rh4CG076400 Rh4DG065700
rosa_wichuraiana	Rw4G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	926
AccII	CGCG	1 cut(s)	297
AciI	CCGC	4 cut(s)	14, 295, 642, 1173
AclWI	GGATC	4 cut(s)	16, 407, 653, 965
AcsI	RAATTY	2 cut(s)	468, 536
AcuI	CTGAAG	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	927
AdeI	CACNNNGTG	2 cut(s)	549, 1042
AfaI	GTAC	3 cut(s)	291, 659, 1064
AgsI	TTSAA	1 cut(s)	759
AleI	CACNNNNGTG	1 cut(s)	1145
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	113, 1207
AlwI	GGATC	4 cut(s)	16, 407, 653, 965
AoxI	GGCC	2 cut(s)	225, 688
ApeKI	GCWGC	3 cut(s)	65, 1175, 1250
ApoI	RAATTY	2 cut(s)	468, 536
AspLEI	GCGC	3 cut(s)	191, 868, 929
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	3 cut(s)	51, 790, 955
AsuHPI	GGTGA	3 cut(s)	65, 775, 1159
AvaII	GGWCC	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	1051
BanI	GGYRCC	1 cut(s)	926
BanII	GRGCYC	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	996, 1028
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	3 cut(s)	777, 805, 1011
Bbv12I	GWGCWC	1 cut(s)	148
BbvCI	CCTCAGC	2 cut(s)	453, 1239
BbvI	GCAGC	3 cut(s)	52, 1187, 1262
BccI	CCATC	3 cut(s)	733, 931, 1125
BcgI	CGANNNNNNTGC	2 cut(s)	1151, 1185
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	3 cut(s)	51, 790, 955
BcoDI	GTCTC	2 cut(s)	113, 1207
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	930
BisI	GCNGC	4 cut(s)	66, 1173, 1176, 1251
BlsI	GCNGC	4 cut(s)	67, 1174, 1177, 1252
BmcAI	AGTACT	1 cut(s)	291
Bme1390I	CCNGG	3 cut(s)	51, 790, 955
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	163, 928, 1091
BmrFI	CCNGG	3 cut(s)	51, 790, 955
BmsI	GCATC	1 cut(s)	555
BpiI	GAAGAC	3 cut(s)	777, 805, 1011
Bpu10I	CCTNAGC	2 cut(s)	453, 1239
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	3 cut(s)	51, 790, 955
Bsa29I	ATCGAT	1 cut(s)	960
BsaHI	GRCGYC	1 cut(s)	927
Bse1I	ACTGG	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	1051
Bse3DI	GCAATG	3 cut(s)	35, 868, 1065
BseCI	ATCGAT	1 cut(s)	960
BseGI	GGATG	4 cut(s)	314, 462, 570, 1136
BseMI	GCAATG	3 cut(s)	35, 868, 1065
BseMII	CTCAG	3 cut(s)	467, 896, 1253
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	52, 1187, 1262
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	227, 690
BshNI	GGYRCC	1 cut(s)	926
BshVI	ATCGAT	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	51, 789, 954
BslFI	GGGAC	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	113, 1207
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	2 cut(s)	227, 690
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
BspACI	CCGC	4 cut(s)	14, 295, 642, 1173
BspANI	GGCC	2 cut(s)	227, 690
BspCNI	CTCAG	3 cut(s)	466, 897, 1252
BspDI	ATCGAT	1 cut(s)	960
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	163, 928, 1091
BspPI	GGATC	4 cut(s)	16, 407, 653, 965
BspT107I	GGYRCC	1 cut(s)	926
BsrDI	GCAATG	3 cut(s)	35, 868, 1065
BsrI	ACTGG	1 cut(s)	423
BssMI	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
BssNI	GRCGYC	1 cut(s)	927
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	718
BstACI	GRCGYC	1 cut(s)	927
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	4 cut(s)	453, 905, 1051, 1239
BstF5I	GGATG	4 cut(s)	314, 462, 570, 1136
BstFNI	CGCG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	3 cut(s)	191, 868, 929
BstKTI	GATC	7 cut(s)	11, 45, 177, 402, 648, 834, 960
BstMAI	GTCTC	2 cut(s)	113, 1207
BstMBI	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 680, 926
BstSCI	CCNGG	3 cut(s)	49, 788, 953
BstSFI	CTRYAG	1 cut(s)	921
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	52, 1187, 1262
BstV2I	GAAGAC	3 cut(s)	777, 805, 1011
BstX2I	RGATCY	1 cut(s)	399
BstXI	CCANNNNNNTGG	3 cut(s)	284, 473, 937
BstYI	RGATCY	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	960
Bsu36I	CCTNAGG	1 cut(s)	1051
BsuRI	GGCC	2 cut(s)	227, 690
BsuTUI	ATCGAT	1 cut(s)	960
BtsCI	GGATG	4 cut(s)	314, 462, 570, 1136
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	1 cut(s)	383
CfoI	GCGC	3 cut(s)	191, 868, 929
Cfr13I	GGNCC	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	960
Csp6I	GTAC	3 cut(s)	290, 658, 1063
CviAII	CATG	5 cut(s)	345, 430, 610, 711, 1143
CviQI	GTAC	3 cut(s)	290, 658, 1063
DdeI	CTNAG	4 cut(s)	453, 905, 1051, 1239
DinI	GGCGCC	1 cut(s)	928
DpnI	GATC	7 cut(s)	10, 44, 176, 401, 647, 833, 959
DpnII	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
DraIII	CACNNNGTG	2 cut(s)	549, 1042
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	958
Eco81I	CCTNAGG	1 cut(s)	1051
EcoICRI	GAGCTC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	148
EgeI	GGCGCC	1 cut(s)	928
EheI	GGCGCC	1 cut(s)	928
FaeI	CATG	5 cut(s)	348, 433, 613, 714, 1146
FalI	AAGNNNNNCTT	4 cut(s)	580, 612, 829, 861
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	5 cut(s)	344, 429, 609, 710, 1142
FauI	CCCGC	1 cut(s)	635
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	66, 1173, 1176, 1251
FokI	GGATG	4 cut(s)	321, 449, 577, 1143
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	66, 1173, 1176, 1251
FspAI	RTGCGCAY	1 cut(s)	867
FspBI	CTAG	1 cut(s)	74
FspI	TGCGCA	1 cut(s)	867
GlaI	GCGC	3 cut(s)	190, 867, 928
GluI	GCNGC	4 cut(s)	66, 1173, 1176, 1251
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	2 cut(s)	227, 690
HapII	CCGG	3 cut(s)	51, 789, 954
HhaI	GCGC	3 cut(s)	191, 868, 929
Hin1I	GRCGYC	1 cut(s)	927
Hin1II	CATG	5 cut(s)	348, 433, 613, 714, 1146
Hin6I	GCGC	3 cut(s)	189, 866, 927
HinP1I	GCGC	3 cut(s)	189, 866, 927
HinfI	GANTC	4 cut(s)	106, 962, 968, 1029
HpaII	CCGG	3 cut(s)	51, 789, 954
HphI	GGTGA	3 cut(s)	65, 775, 1159
Hpy166II	GTNNAC	4 cut(s)	254, 1159, 1228, 1261
Hpy188I	TCNGA	3 cut(s)	391, 836, 967
Hpy188III	TCNNGA	3 cut(s)	74, 172, 1229
Hpy8I	GTNNAC	4 cut(s)	254, 1159, 1228, 1261
HpyAV	CCTTC	3 cut(s)	254, 855, 982
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4V	TGCA	5 cut(s)	40, 497, 517, 754, 861
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 680, 926
HpyF3I	CTNAG	4 cut(s)	453, 905, 1051, 1239
Hsp92I	GRCGYC	1 cut(s)	927
Hsp92II	CATG	5 cut(s)	348, 433, 613, 714, 1146
HspAI	GCGC	3 cut(s)	189, 866, 927
KasI	GGCGCC	1 cut(s)	926
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
LmnI	GCTCC	4 cut(s)	671, 1055, 1116, 1207
Lsp1109I	GCAGC	3 cut(s)	52, 1187, 1262
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	7 cut(s)	10, 44, 176, 401, 647, 833, 959
MboI	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
MboII	GAAGA	9 cut(s)	436, 694, 777, 778, 805, 1013, 1016, 1024, 1162
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	394, 468, 536
Mly113I	GGCGCC	1 cut(s)	927
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	1108
MnlI	CCTC	8 cut(s)	55, 96, 347, 462, 579, 701, 767, 1248
MseI	TTAA	2 cut(s)	405, 728
MslI	CAYNNNNRTG	3 cut(s)	75, 935, 1145
MspA1I	CMGCKG	3 cut(s)	14, 381, 1086
MspI	CCGG	3 cut(s)	51, 789, 954
MspR9I	CCNGG	3 cut(s)	51, 790, 955
Mva1269I	GAATGC	1 cut(s)	754
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	218, 680, 926
NarI	GGCGCC	1 cut(s)	927
NciI	CCSGG	3 cut(s)	51, 790, 955
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
NlaIII	CATG	5 cut(s)	348, 433, 613, 714, 1146
NlaIV	GGNNCC	3 cut(s)	163, 928, 1091
NmuCI	GTSAC	1 cut(s)	203
NsbI	TGCGCA	1 cut(s)	867
OliI	CACNNNNGTG	1 cut(s)	1145
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	962, 968, 1029
PfoI	TCCNGGA	1 cut(s)	788
PkrI	GCNGC	4 cut(s)	67, 1174, 1177, 1252
PleI	GAGTC	1 cut(s)	114
PluTI	GGCGCC	1 cut(s)	930
PpsI	GAGTC	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	163, 928, 1091
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	399
PvuII	CAGCTG	2 cut(s)	381, 1086
RsaI	GTAC	3 cut(s)	291, 659, 1064
RsaNI	GTAC	3 cut(s)	290, 658, 1063
RseI	CAYNNNNRTG	3 cut(s)	75, 935, 1145
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	405, 728
SatI	GCNGC	4 cut(s)	66, 1173, 1176, 1251
Sau3AI	GATC	7 cut(s)	8, 42, 174, 399, 645, 831, 957
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	291
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	3 cut(s)	51, 790, 955
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	921
SfoI	GGCGCC	1 cut(s)	928
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	75, 935, 1145
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	3 cut(s)	394, 468, 536
SsiI	CCGC	4 cut(s)	14, 295, 642, 1173
SspDI	GGCGCC	1 cut(s)	926
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	3 cut(s)	49, 788, 953
TaaI	ACNGT	1 cut(s)	718
TaqI	TCGA	2 cut(s)	534, 960
TasI	AATT	3 cut(s)	394, 468, 536
TatI	WGTACW	3 cut(s)	289, 657, 1062
TauI	GCSGC	1 cut(s)	1175
TfiI	GAWTC	3 cut(s)	962, 968, 1029
Tru1I	TTAA	2 cut(s)	405, 728
Tru9I	TTAA	2 cut(s)	405, 728
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	65, 1175, 1250
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	8 cut(s)	17, 93, 304, 371, 436, 529, 694, 1005
TspGWI	ACGGA	3 cut(s)	40, 174, 191
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	468, 536
XbaI	TCTAGA	1 cut(s)	73
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.