RLG00000009517

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003509
Physical Location & Seq
Reverse (-)
53836496 .. 53845280
8785 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009517

Sequence Viewer

Length: 1590 bp
ATGCTAGCCCAGCCAAGCCACAAGCAACACCCAGGCAAGCGGAGACCCATAAGCCAAAGCCCATCTCTTACACCTCACCTCCCCAGACCCACCTGCAGCAAACCATCAAGGGAGCAGCTTTCGGTCACTATTCATGGCCTAGGGACGACACTCCTAGACCCCGACTTGGAAAACCGCCGCCCCCAAATTTCTTGTCTAAACAGCCGCCGCCGAGAGATTAATGCAGCACCTGACCCCGACCCCGACCTGGAATTCAAAAGTTCAAAGCCCTGGCCCCACTCTGATCCACAACCACCCAAATTAATGTGTGGAAATGAGCTTGAGAATAATGACCTGACTTGCAATGCACGCTACATATATCTGAGCACTGTCAAGTTTAACACTACACTTCAAAGAATGAGTACATCAGCTGAAGCAGTTGTACCTGTATCATTGGAGCAAAGGAGATCTGATCACTTGACAGAAAGGAAAAAGGCTTTACGAGCCCGTTATGTGTATGGCATAATCTTCTTAATAACAAATCTCTGTGCTTGGTTTGTTCGTGATTATGGGCAAAGGGTGTTACCTGAGCTCCACTATTTGAAATCTTGTGGACATGGTGGAAGTGATTGTTTTCATACACAAGGAGTTCTCCGTGTGAGTTTAGGATGCTTTATATTTTTCTTTCTAATGTTCCTGACAACATGTAAAACAAGAAAACTATATGAAGCTCGCAATGCATGGCATTCTGGGTGGTGGGGATCAAAGCTGTTTGCATGGCTTGTATCAATGATGATTCCGCTCTTCTGCCCTTCCAATTACATTCATTTATATGGTGAACTTGCTCGTGTCGGTGCAGGGATTTTTCTCGCTCTCCAGCTTATAAGTGTGATCCAGTTTATTAGATGGTGGAATAAGTACTGGATGCCCGATGAGCAAAAGAAGCAGAGCTGCTCCTTTGGATTGTTCATGTCTACATTGTTTTACATCGCGTCAATGTGTGGAATTGCAGTTATGTATTCATCATATGCGATGAAATCATCCTGTGCTCTCAACATCTTTTTCATCATACGGACAGCAGTTCTACTTATCGTAATGGTGTCTGTATCCCTACATTCCAAGGTAAACAGAGGTCTTTTATCTTCTGGAATCATGGCTTCATACATTGTTTTCCTATGTTGGTCTGCTATCAGAAGTGAACCTGCCAATGAGGAATGCAACCAACAAAGACAAGGGAATGCAAATGGTGATTGGACTACCATACTAGGCTTCCTGATCGCAATATGTGCTATTGTCATGGCAACTTTTTCCACTGGTATTGATTCACAATCATTTCAGTTTCGGCATAATGAAGTTCAACATGAAGATGACATCCCTTACAACTATGGATTCTTCCACCTAGTATTTTCCTTGGGGGCCATGTATTTTGCAATGCTATTCATCAAATTTCATATTTTTGAGGCAGATGTCTATACATGGTCTGCCATCATGAACCTTCTTATAGCCTCTTTATCAGGATTATGGACATTGTTTTCCCCAGTTCTGAGGCAGTCCAAAGTTATGGATCATGAAGAACCTGTTCAGGAGATTGACATCTCAGATGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent Serinc

Protein Analysis

530

Amino Acids

60.35

Weight (kDa)

8.69

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 157 - 443 7.6e-56 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 2 cut(s) 101, 1189
AccBSI CCGCTC 1 cut(s) 781
AccI GTMKAC 1 cut(s) 953
AccII CGCG 1 cut(s) 971
AciI CCGC 6 cut(s) 40, 175, 178, 205, 208, 779
AclWI GGATC 4 cut(s) 278, 748, 865, 1551
AcsI RAATTY 3 cut(s) 186, 251, 1424
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 3 cut(s) 403, 423, 899
AfiI CCNNNNNNNGG 2 cut(s) 166, 247
AflIII ACRYGT 1 cut(s) 683
AgsI TTSAA 5 cut(s) 256, 264, 392, 583, 1337
AjnI CCWGG 3 cut(s) 31, 246, 269
AluBI AGCT 8 cut(s) 118, 319, 410, 571, 710, 748, 859, 930
AluI AGCT 8 cut(s) 118, 319, 410, 571, 710, 748, 859, 930
Alw21I GWGCWC 3 cut(s) 368, 573, 1030
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 4 cut(s) 278, 748, 865, 1551
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 3 cut(s) 136, 272, 1395
ApeKI GCWGC 4 cut(s) 96, 115, 224, 930
ApoI RAATTY 3 cut(s) 186, 251, 1424
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AseI ATTAAT 2 cut(s) 219, 302
Asp700I GAANNNNTTC 1 cut(s) 1557
AspA2I CCTAGG 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 273, 1395
AsuHPI GGTGA 3 cut(s) 68, 827, 1238
AsuNHI GCTAGC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 139
BanII GRGCYC 2 cut(s) 487, 573
BarI GAAGNNNNNNTAC 2 cut(s) 405, 437
BauI CACGAG 1 cut(s) 825
Bbv12I GWGCWC 3 cut(s) 368, 573, 1030
BbvI GCAGC 4 cut(s) 108, 127, 236, 917
BccI CCATC 4 cut(s) 70, 112, 879, 1472
BciT130I CCWGG 3 cut(s) 33, 248, 271
BciVI GTATCC 1 cut(s) 1096
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 5 cut(s) 5, 140, 155, 1244, 1379
BfmI CTRYAG 1 cut(s) 94
BfuAI ACCTGC 2 cut(s) 101, 1189
BfuI GTATCC 1 cut(s) 1096
BglII AGATCT 1 cut(s) 446
BisI GCNGC 7 cut(s) 97, 116, 178, 205, 208, 225, 931
BlnI CCTAGG 1 cut(s) 139
BlsI GCNGC 7 cut(s) 98, 117, 179, 206, 209, 226, 932
BmcAI AGTACT 1 cut(s) 899
Bme1390I CCNGG 3 cut(s) 33, 248, 271
BmgT120I GGNCC 2 cut(s) 273, 1395
BmiI GGNNCC 2 cut(s) 275, 1396
BmrFI CCNGG 3 cut(s) 33, 248, 271
BmrI ACTGGG 1 cut(s) 1511
BmsI GCATC 2 cut(s) 638, 894
BmtI GCTAGC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 1511
BpmI CTGGAG 1 cut(s) 839
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 1571
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 5 cut(s) 31, 139, 269, 1098, 1389
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 555, 585
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 247
Bse1I ACTGG 4 cut(s) 874, 905, 1297, 1517
Bse3DI GCAATG 3 cut(s) 349, 721, 1416
Bse8I GATNNNNATC 1 cut(s) 1571
BseBI CCWGG 3 cut(s) 33, 248, 271
BseDI CCNNGG 5 cut(s) 31, 139, 269, 1098, 1389
BseGI GGATG 4 cut(s) 653, 909, 1019, 1350
BseJI GATNNNNATC 1 cut(s) 1571
BseLI CCNNNNNNNGG 2 cut(s) 166, 247
BseMI GCAATG 3 cut(s) 349, 721, 1416
BseMII CTCAG 4 cut(s) 353, 558, 1514, 1590
BseNI ACTGG 4 cut(s) 874, 905, 1297, 1517
BseXI GCAGC 4 cut(s) 108, 127, 236, 917
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 971
BshFI GGCC 3 cut(s) 138, 274, 1397
BsiHKAI GWGCWC 3 cut(s) 368, 573, 1030
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 166, 247
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 3 cut(s) 724, 1199, 1222
BsnI GGCC 3 cut(s) 138, 274, 1397
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 4 cut(s) 368, 487, 573, 1030
Bsp143I GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
BspACI CCGC 6 cut(s) 40, 175, 178, 205, 208, 779
BspANI GGCC 3 cut(s) 138, 274, 1397
BspCNI CTCAG 4 cut(s) 354, 559, 1515, 1589
BspFNI CGCG 1 cut(s) 971
BspHI TCATGA 2 cut(s) 1467, 1546
BspLI GGNNCC 2 cut(s) 275, 1396
BspMAI CTGCAG 1 cut(s) 98
BspMI ACCTGC 2 cut(s) 101, 1189
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 4 cut(s) 278, 748, 865, 1551
BspQI GCTCTTC 1 cut(s) 788
BspTNI GGTCTC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 781
BsrDI GCAATG 3 cut(s) 349, 721, 1416
BsrI ACTGG 4 cut(s) 874, 905, 1297, 1517
BssECI CCNNGG 5 cut(s) 31, 139, 269, 1098, 1389
BssMI GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 3 cut(s) 139, 1098, 1389
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 3 cut(s) 33, 248, 271
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 788
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstC8I GCNNGC 4 cut(s) 6, 38, 349, 712
BstDEI CTNAG 4 cut(s) 362, 567, 1523, 1576
BstF5I GGATG 4 cut(s) 653, 909, 1019, 1350
BstFNI CGCG 1 cut(s) 971
BstKTI GATC 7 cut(s) 286, 449, 454, 743, 873, 1257, 1546
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
BstMWI GCNNNNNNNGC 7 cut(s) 10, 348, 482, 716, 913, 922, 1265
BstNI CCWGG 3 cut(s) 33, 248, 271
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 3 cut(s) 31, 246, 269
BstSFI CTRYAG 1 cut(s) 94
BstUI CGCG 1 cut(s) 971
BstV1I GCAGC 4 cut(s) 108, 127, 236, 917
BstX2I RGATCY 1 cut(s) 446
BstXI CCANNNNNNTGG 1 cut(s) 1540
BstYI RGATCY 1 cut(s) 446
BsuI GTATCC 1 cut(s) 1096
BsuRI GGCC 3 cut(s) 138, 274, 1397
BtgZI GCGATG 2 cut(s) 952, 1025
BtsCI GGATG 4 cut(s) 653, 909, 1019, 1350
BtsIMutI CAGTG 2 cut(s) 366, 1290
BveI ACCTGC 2 cut(s) 101, 1189
Cac8I GCNNGC 4 cut(s) 6, 38, 349, 712
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 2 cut(s) 1467, 1546
Cfr13I GGNCC 2 cut(s) 273, 1395
CseI GACGC 1 cut(s) 960
Csp6I GTAC 3 cut(s) 402, 422, 898
CspCI CAANNNNNGTGG 2 cut(s) 1279, 1314
CviQI GTAC 3 cut(s) 402, 422, 898
DdeI CTNAG 4 cut(s) 362, 567, 1523, 1576
DpnI GATC 7 cut(s) 285, 448, 453, 742, 872, 1256, 1545
DpnII GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 3 cut(s) 139, 1098, 1389
Eco24I GRGCYC 2 cut(s) 487, 573
Eco31I GGTCTC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 571
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 31, 246, 269
EcoT14I CCWWGG 3 cut(s) 139, 1098, 1389
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 2 cut(s) 487, 573
ErhI CCWWGG 3 cut(s) 139, 1098, 1389
FaqI GGGAC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 1006
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 953
Fnu4HI GCNGC 7 cut(s) 97, 116, 178, 205, 208, 225, 931
FokI GGATG 4 cut(s) 660, 916, 1006, 1337
FriOI GRGCYC 2 cut(s) 487, 573
Fsp4HI GCNGC 7 cut(s) 97, 116, 178, 205, 208, 225, 931
FspBI CTAG 5 cut(s) 5, 140, 155, 1244, 1379
GluI GCNGC 7 cut(s) 97, 116, 178, 205, 208, 225, 931
GsaI CCCAGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 3 cut(s) 138, 274, 1397
HgaI GACGC 1 cut(s) 960
HinfI GANTC 4 cut(s) 775, 1128, 1301, 1368
HphI GGTGA 3 cut(s) 68, 827, 1238
Hpy166II GTNNAC 5 cut(s) 593, 818, 954, 1105, 1178
Hpy188I TCNGA 6 cut(s) 283, 363, 451, 1172, 1524, 1579
Hpy188III TCNNGA 8 cut(s) 542, 676, 1125, 1252, 1468, 1494, 1547, 1562
Hpy8I GTNNAC 5 cut(s) 593, 818, 954, 1105, 1178
HpyAV CCTTC 2 cut(s) 801, 1484
HpyCH4III ACNGT 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 348, 482, 716, 913, 922, 1265
HpyF3I CTNAG 4 cut(s) 362, 567, 1523, 1576
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 4 cut(s) 112, 436, 576, 938
Lsp1109I GCAGC 4 cut(s) 108, 127, 236, 917
LweI GCATC 2 cut(s) 638, 894
MaeI CTAG 5 cut(s) 5, 140, 155, 1244, 1379
MaeIII GTNAC 2 cut(s) 124, 561
MalI GATC 7 cut(s) 285, 448, 453, 742, 872, 1256, 1545
MbiI CCGCTC 1 cut(s) 781
MboI GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
MboII GAAGA 6 cut(s) 499, 775, 1113, 1355, 1363, 1562
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 4 cut(s) 368, 487, 573, 1030
MluCI AATT 6 cut(s) 186, 251, 299, 796, 984, 1424
MnlI CCTC 7 cut(s) 84, 89, 1103, 1183, 1432, 1495, 1518
Mph1103I ATGCAT 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 1557
MseI TTAA 4 cut(s) 219, 302, 378, 512
MslI CAYNNNNRTG 2 cut(s) 810, 1344
MspA1I CMGCKG 1 cut(s) 410
MspR9I CCNGG 3 cut(s) 33, 248, 271
Mva1269I GAATGC 3 cut(s) 724, 1199, 1222
MvaI CCWGG 3 cut(s) 33, 248, 271
MvnI CGCG 1 cut(s) 971
MwoI GCNNNNNNNGC 7 cut(s) 10, 348, 482, 716, 913, 922, 1265
NdeI CATATG 1 cut(s) 1006
NdeII GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
NheI GCTAGC 1 cut(s) 4
NlaIV GGNNCC 2 cut(s) 275, 1396
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 721
NspI RCATGY 1 cut(s) 687
PagI TCATGA 2 cut(s) 1467, 1546
PaqCI CACCTGC 1 cut(s) 101
PciI ACATGT 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 788
PctI GAATGC 3 cut(s) 724, 1199, 1222
PdmI GAANNNNTTC 1 cut(s) 1557
PfeI GAWTC 4 cut(s) 775, 1128, 1301, 1368
PkrI GCNGC 7 cut(s) 98, 117, 179, 206, 209, 226, 932
PscI ACATGT 1 cut(s) 683
PshBI ATTAAT 2 cut(s) 219, 302
PsiI TTATAA 1 cut(s) 863
Psp124BI GAGCTC 1 cut(s) 573
Psp6I CCWGG 3 cut(s) 31, 246, 269
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 3 cut(s) 31, 246, 269
PspN4I GGNNCC 2 cut(s) 275, 1396
PspPI GGNCC 2 cut(s) 273, 1395
PstI CTGCAG 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 3 cut(s) 403, 423, 899
RsaNI GTAC 3 cut(s) 402, 422, 898
RseI CAYNNNNRTG 2 cut(s) 810, 1344
SacI GAGCTC 1 cut(s) 573
SapI GCTCTTC 1 cut(s) 788
SaqAI TTAA 4 cut(s) 219, 302, 378, 512
SatI GCNGC 7 cut(s) 97, 116, 178, 205, 208, 225, 931
Sau3AI GATC 7 cut(s) 283, 446, 451, 740, 870, 1254, 1543
Sau96I GGNCC 2 cut(s) 273, 1395
ScaI AGTACT 1 cut(s) 899
ScrFI CCNGG 3 cut(s) 33, 248, 271
SduI GDGCHC 4 cut(s) 368, 487, 573, 1030
SfaNI GCATC 2 cut(s) 638, 894
SfcI CTRYAG 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 810, 1344
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 6 cut(s) 186, 251, 299, 796, 984, 1424
SsiI CCGC 6 cut(s) 40, 175, 178, 205, 208, 779
SspMI CTAG 5 cut(s) 5, 140, 155, 1244, 1379
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 3 cut(s) 31, 246, 269
StyI CCWWGG 3 cut(s) 139, 1098, 1389
TaaI ACNGT 1 cut(s) 370
TaqII GACCGA 1 cut(s) 112
TasI AATT 6 cut(s) 186, 251, 299, 796, 984, 1424
TatI WGTACW 2 cut(s) 401, 897
TauI GCSGC 3 cut(s) 180, 207, 210
TfiI GAWTC 4 cut(s) 775, 1128, 1301, 1368
Tru1I TTAA 4 cut(s) 219, 302, 378, 512
Tru9I TTAA 4 cut(s) 219, 302, 378, 512
TscAI CASTG 2 cut(s) 373, 1297
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 4 cut(s) 96, 115, 224, 930
Tsp45I GTSAC 1 cut(s) 124
TspGWI ACGGA 2 cut(s) 623, 1066
TspRI CASTG 2 cut(s) 373, 1297
VspI ATTAAT 2 cut(s) 219, 302
XapI RAATTY 3 cut(s) 186, 251, 1424
XceI RCATGY 1 cut(s) 687
XmaJI CCTAGG 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 953
XmnI GAANNNNTTC 1 cut(s) 1557
XspI CTAG 5 cut(s) 5, 140, 155, 1244, 1379
ZrmI AGTACT 1 cut(s) 899
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.