Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003509

Physical Location & Seq

Genomic Coordinates Forward (+)

9994499 .. 9999956

Gene Structure 5458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAGTATATCTGCTGAAGTAGTTGAACCTACGGGTGAGGTTATTCTTTGGGAAGTAGTACCTGTATCATTGGAGCAAAGGAGATCTGATCACTTGACAGAAAGGAAAAAGGCTTTACGAGCCCGTTATGTATATGGCATAATCTTCTTAATAACAAATCTTTGTGCTTGGTTTGTTCGTGATTATGGGCAAAGGGTGTTACCTGAGCTCCACTATTTGAAATCTTGTGGACATGGTGGAAGTGATTGTTTTCATACACAAGGAGTTCTCCGTGTGAGTTTAGGATGCTTTATATTTTTCTTTCTAATGTTCCTGACAACATGTAAAACAAGAAAACTATATAAAGCTCCCAATGCATGGCATTCTGGGTGGTGGGGATCAAAGCTGTTTGCATGGCTTGTGTCAATGATGATTCCGCTCTTCTGCCCTTCCAATTACATTCATTTATATGGTGAACTTGCTCGTGTTGGTGCAGGGATTTTTCTCATTCTCCAGCTTATAAGTGTGATCCAGTTTATTAGATGGTGGAATAAGTACTGGATGCCCAATGAGCAAAAGAAGCAGAGCTGCTCCCTTGGATTGTTCATGTCTACATTGTTTTACATCGCGTCGATGTGTGGAATTGCAGTTATGTATTCATCATATGCGATGAAATCATCATGTGCTCTCAACATCTTTTTCATCATATGGACTGCAGTTCTACTTATCGTAATGATGTCTGTATCCCTACATTCCAAGGTAAACAGAGGTCTTTTATCTTCTGGAATCATGGCTTCATACATTGTTTTCCTATGTTGGTCTGCTATCAGAAGTGAACCTGCCAATGAGGAATGCAACCCACAAAGACAAGGGAATGCAAATGGTGATTGGACTACCATACTAGGCTTCCTGATCGCAATATGTGCTATTGTCATGGCAACTTTTTCCACCGGTATTGATTCACAATCATTTCAGTTTCGGCATAATGAAGTTCAACATGAAGATGACATCCCTTACAAGTATGGATTCTTCCACCTAGTATTTTCCTTGGGGGCCATGTATTTTGCAATGCTATTCATCAGTTGGAACCTCAATAACTCAGCTAAGAAGTGGAGCATTGATGTTGGCTGGGCTAGTACATGGGTGAAGATTGTCAATGAGTGGTTTGCAGCCTCAATATATATATGGACATTGTTTTCCCCAGTTCTGAGGCAGTCCAAAATTATGGATCATGAAGAACCTGTTCAGGAGATTGACAGCTCAGATGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Serinc

Protein Analysis

417

Amino Acids

47.83

Weight (kDa)

8.38

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	36 - 322	1.7e-56	Serine incorporator (Serinc)
Serinc	PF03348	322 - 397	2.3e-17	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205
fragaria_vesca	FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470
malus_domestica	MD13G1230200.v1.1
prunus_persica	Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396601 RchiOBHm_Chr4g0421091
rosa_laevigata	RLG00000009517
rosa_multiflora	Rmu_sc0006586.1_g000024 Rmu_sc0010969.1_g000002
rosa_roxburghii	Rroxscaffold_5G00341460
rosa_rugosa	Rorug03G0348500
rosa_samantha	Rh2CG182400 Rh4AG070700 Rh4BG068600 Rh4CG076400 Rh4DG065700
rosa_wichuraiana	Rw4G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	826
AccB7I	CCANNNNNTGG	1 cut(s)	357
AccBSI	CCGCTC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	590
AccII	CGCG	1 cut(s)	608
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	3 cut(s)	385, 502, 1215
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	60, 536, 1117
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	320
AgeI	ACCGGT	1 cut(s)	929
AgsI	TTSAA	3 cut(s)	26, 220, 974
AluBI	AGCT	7 cut(s)	208, 347, 385, 496, 567, 1082, 1239
AluI	AGCT	7 cut(s)	208, 347, 385, 496, 567, 1082, 1239
Alw21I	GWGCWC	2 cut(s)	210, 667
AlwI	GGATC	3 cut(s)	385, 502, 1215
AoxI	GGCC	1 cut(s)	1032
ApeKI	GCWGC	2 cut(s)	567, 1148
AsiGI	ACCGGT	1 cut(s)	929
Asp700I	GAANNNNTTC	1 cut(s)	1221
AspS9I	GGNCC	1 cut(s)	1032
AsuHPI	GGTGA	4 cut(s)	47, 464, 875, 1135
BanII	GRGCYC	2 cut(s)	124, 210
BarI	GAAGNNNNNNTAC	2 cut(s)	992, 1024
BauI	CACGAG	1 cut(s)	462
Bbv12I	GWGCWC	2 cut(s)	210, 667
BbvI	GCAGC	2 cut(s)	554, 1160
BccI	CCATC	1 cut(s)	516
BciVI	GTATCC	1 cut(s)	733
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	3 cut(s)	881, 1016, 1113
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	733
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	2 cut(s)	568, 1149
BlsI	GCNGC	2 cut(s)	569, 1150
BmcAI	AGTACT	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	1032
BmiI	GGNNCC	2 cut(s)	1033, 1067
BmrI	ACTGGG	1 cut(s)	1175
BmsI	GCATC	2 cut(s)	275, 531
BmuI	ACTGGG	1 cut(s)	1175
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	574, 735, 1026
BsaWI	WCCGGW	1 cut(s)	929
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	3 cut(s)	511, 542, 1181
Bse3DI	GCAATG	1 cut(s)	1053
BseDI	CCNNGG	3 cut(s)	574, 735, 1026
BseGI	GGATG	3 cut(s)	290, 546, 987
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	4 cut(s)	195, 1092, 1178, 1254
BseNI	ACTGG	3 cut(s)	511, 542, 1181
BseXI	GCAGC	2 cut(s)	554, 1160
BseYI	CCCAGC	1 cut(s)	1107
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	1034
BshTI	ACCGGT	1 cut(s)	929
BsiHKAI	GWGCWC	2 cut(s)	210, 667
BsiSI	CCGG	1 cut(s)	930
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmI	GAATGC	3 cut(s)	361, 836, 859
BsnI	GGCC	1 cut(s)	1034
Bsp1286I	GDGCHC	3 cut(s)	124, 210, 667
Bsp143I	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	1 cut(s)	1034
BspCNI	CTCAG	4 cut(s)	196, 1091, 1179, 1253
BspFNI	CGCG	1 cut(s)	608
BspHI	TCATGA	1 cut(s)	1210
BspLI	GGNNCC	2 cut(s)	1033, 1067
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	385, 502, 1215
BspQI	GCTCTTC	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	1053
BsrFI	RCCGGY	1 cut(s)	929
BsrI	ACTGG	3 cut(s)	511, 542, 1181
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	3 cut(s)	574, 735, 1026
BssMI	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	3 cut(s)	574, 735, 1026
Bst2BI	CACGAG	1 cut(s)	462
Bst6I	CTCTTC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstDEI	CTNAG	5 cut(s)	204, 1078, 1083, 1187, 1240
BstF5I	GGATG	3 cut(s)	290, 546, 987
BstFNI	CGCG	1 cut(s)	608
BstKTI	GATC	6 cut(s)	86, 91, 380, 510, 894, 1210
BstMBI	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 353, 550, 559, 902
BstNSI	RCATGY	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	554, 1160
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	1204
BstYI	RGATCY	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	1034
BtgZI	GCGATG	2 cut(s)	589, 662
BtsCI	GGATG	3 cut(s)	290, 546, 987
BveI	ACCTGC	1 cut(s)	826
CciI	TCATGA	1 cut(s)	1210
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	1032
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	59, 535, 1116
CspAI	ACCGGT	1 cut(s)	929
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviQI	GTAC	3 cut(s)	59, 535, 1116
DdeI	CTNAG	5 cut(s)	204, 1078, 1083, 1187, 1240
DpnI	GATC	6 cut(s)	85, 90, 379, 509, 893, 1209
DpnII	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	3 cut(s)	574, 735, 1026
Eco24I	GRGCYC	2 cut(s)	124, 210
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	208
EcoT14I	CCWWGG	3 cut(s)	574, 735, 1026
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	2 cut(s)	124, 210
ErhI	CCWWGG	3 cut(s)	574, 735, 1026
FauNDI	CATATG	2 cut(s)	643, 686
FbaI	TGATCA	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	2 cut(s)	568, 1149
FokI	GGATG	3 cut(s)	297, 553, 974
FriOI	GRGCYC	2 cut(s)	124, 210
Fsp4HI	GCNGC	2 cut(s)	568, 1149
FspBI	CTAG	3 cut(s)	881, 1016, 1113
GluI	GCNGC	2 cut(s)	568, 1149
GsaI	CCCAGC	1 cut(s)	1111
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	1034
HapII	CCGG	1 cut(s)	930
HgaI	GACGC	1 cut(s)	597
HinfI	GANTC	4 cut(s)	412, 765, 938, 1005
HpaII	CCGG	1 cut(s)	930
HphI	GGTGA	4 cut(s)	47, 464, 875, 1135
Hpy166II	GTNNAC	5 cut(s)	230, 455, 591, 742, 815
Hpy188I	TCNGA	4 cut(s)	88, 809, 1188, 1243
Hpy188III	TCNNGA	6 cut(s)	179, 313, 762, 889, 1211, 1226
Hpy8I	GTNNAC	5 cut(s)	230, 455, 591, 742, 815
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	1 cut(s)	438
HpyCH4V	TGCA	9 cut(s)	356, 392, 473, 626, 695, 834, 857, 1046, 1148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 353, 550, 559, 902
HpyF3I	CTNAG	5 cut(s)	204, 1078, 1083, 1187, 1240
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	5 cut(s)	73, 213, 352, 575, 1092
Lsp1109I	GCAGC	2 cut(s)	554, 1160
LweI	GCATC	2 cut(s)	275, 531
MaeI	CTAG	3 cut(s)	881, 1016, 1113
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	6 cut(s)	85, 90, 379, 509, 893, 1209
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
MboII	GAAGA	7 cut(s)	136, 412, 750, 992, 1000, 1138, 1226
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	3 cut(s)	124, 210, 667
MluCI	AATT	3 cut(s)	433, 621, 1200
MmeI	TCCRAC	1 cut(s)	1043
MnlI	CCTC	6 cut(s)	31, 740, 820, 1079, 1162, 1182
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	1221
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	2 cut(s)	447, 981
MspI	CCGG	1 cut(s)	930
Mva1269I	GAATGC	3 cut(s)	361, 836, 859
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	5 cut(s)	119, 353, 550, 559, 902
NdeI	CATATG	2 cut(s)	643, 686
NdeII	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
NlaIV	GGNNCC	2 cut(s)	1033, 1067
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	324
PagI	TCATGA	1 cut(s)	1210
PciI	ACATGT	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	425
PctI	GAATGC	3 cut(s)	361, 836, 859
PdmI	GAANNNNTTC	1 cut(s)	1221
PfeI	GAWTC	4 cut(s)	412, 765, 938, 1005
PflMI	CCANNNNNTGG	1 cut(s)	357
PinAI	ACCGGT	1 cut(s)	929
PkrI	GCNGC	2 cut(s)	569, 1150
PscI	ACATGT	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	1107
PspN4I	GGNNCC	2 cut(s)	1033, 1067
PspPI	GGNCC	1 cut(s)	1032
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	3 cut(s)	60, 536, 1117
RsaNI	GTAC	3 cut(s)	59, 535, 1116
RseI	CAYNNNNRTG	2 cut(s)	447, 981
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	568, 1149
Sau3AI	GATC	6 cut(s)	83, 88, 377, 507, 891, 1207
Sau96I	GGNCC	1 cut(s)	1032
ScaI	AGTACT	1 cut(s)	536
SduI	GDGCHC	3 cut(s)	124, 210, 667
SfaNI	GCATC	2 cut(s)	275, 531
SfcI	CTRYAG	1 cut(s)	693
SmiMI	CAYNNNNRTG	2 cut(s)	447, 981
Sse9I	AATT	3 cut(s)	433, 621, 1200
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	3 cut(s)	881, 1016, 1113
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	3 cut(s)	574, 735, 1026
TaqI	TCGA	1 cut(s)	611
TasI	AATT	3 cut(s)	433, 621, 1200
TatI	WGTACW	2 cut(s)	534, 1115
TfiI	GAWTC	4 cut(s)	412, 765, 938, 1005
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	2 cut(s)	567, 1148
TspGWI	ACGGA	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	357
XceI	RCATGY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	1221
XspI	CTAG	3 cut(s)	881, 1016, 1113
ZrmI	AGTACT	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.