Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010969.1

Orthogroup ID

OG0003509

Physical Location & Seq

Genomic Coordinates Forward (+)

15789 .. 16654

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010969.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgcagtttcggcgtaatgaagttcaacatgaagatgacatcccttacaagtatggattcttccacctagtattttccttgggggccatgtattttgcaatgctattcatcagttggaacctcaataactcagctaagaagtggagcattgatgttggctgggctagtacatgggtgaagattgtcaatgagtggtttgcagcctcaatatatatatggacattgttttccccagttctgaggcagtccaaagttatggatcatgaagaacctgttcaggagattgacagctcagatgtgccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Serinc

Protein Analysis

101

Amino Acids

11.98

Weight (kDa)

5.17

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205
fragaria_vesca	FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470
malus_domestica	MD13G1230200.v1.1
prunus_persica	Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396601 RchiOBHm_Chr4g0421091
rosa_laevigata	RLG00000009517
rosa_multiflora	Rmu_sc0006586.1_g000024 Rmu_sc0010969.1_g000002
rosa_roxburghii	Rroxscaffold_5G00341460
rosa_rugosa	Rorug03G0348500
rosa_samantha	Rh2CG182400 Rh4AG070700 Rh4BG068600 Rh4CG076400 Rh4DG065700
rosa_wichuraiana	Rw4G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	2 cut(s)	134, 291
AluI	AGCT	2 cut(s)	134, 291
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	187
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
BbvI	GCAGC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	68, 165
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	85, 119
BmrI	ACTGGG	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	3 cut(s)	144, 230, 306
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	143, 231, 305
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	85, 119
BspPI	GGATC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	130, 135, 239, 292
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	39
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	5 cut(s)	29, 88, 171, 263, 303
CviJI	RGCY	6 cut(s)	86, 134, 159, 164, 203, 291
CviKI_1	RGCY	6 cut(s)	86, 134, 159, 164, 203, 291
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	130, 135, 239, 292
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	5 cut(s)	32, 91, 174, 266, 306
FatI	CATG	5 cut(s)	28, 87, 170, 262, 302
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	68, 165
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	32, 91, 174, 266, 306
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	240, 295
Hpy188III	TCNNGA	2 cut(s)	263, 278
HpyCH4V	TGCA	3 cut(s)	4, 98, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	4 cut(s)	130, 135, 239, 292
Hsp92II	CATG	5 cut(s)	32, 91, 174, 266, 306
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	145, 246, 263, 285
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	68, 165
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	4 cut(s)	44, 52, 190, 278
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	131, 214, 234
MroXI	GAANNNNTTC	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	5 cut(s)	32, 91, 174, 266, 306
NlaIV	GGNNCC	2 cut(s)	85, 119
PagI	TCATGA	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	85, 119
PspPI	GGNCC	1 cut(s)	84
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	33
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	84
SetI	ASST	5 cut(s)	69, 123, 136, 274, 293
SmiMI	CAYNNNNRTG	1 cut(s)	33
SspMI	CTAG	2 cut(s)	68, 165
StyI	CCWWGG	1 cut(s)	78
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	4 cut(s)	33, 45, 97, 279
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	68, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.