MD13G1230200.v1.1

Serine incorporator

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
22603503 .. 22608551
5049 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1230200.v1.1.491

Sequence Viewer

Length: 1398 bp
ATGAATGTATCTGCTGAAGGAGTTGAAGCTGTGGCAGAGGTTGTTCCTTGGGAAGAAGTATCTGAGTCATTGGAGCAAAAGAGGATTGATTATTTAGCAGCAAAGAAAAAATCGCTGCGAGCCCGTTATATATATGGCGTAATCTTCTTATTTACAAATCTTTGTGCTTGGTTTATTCGCGACTATGGGCAAGGGGTTCTGCCTCAGCTCCATTATTTTAAATCTTGTGGAATTCGCGGAAGCGATTGTTTCCGTACGCTGGGAGTTCTTCGCATATTTTTCTTTCTAATGTTCCTCACTGCATCTAAAACAAGAAAACTAAGTGAAGCTCGCAATGTATGGCATTCTGGATTGTGGGGATTCAAGTTTTGCATATTGTTTGTGTCAATGGTGGTTCCACTCTTCATCCCTCCACACTTCATTCAATTATACGGTGAATTTGCTCGTGTCGGTGCAGGGATATTTCTCGTTCTTCAACTTATAAGTGTGATCCAGTTTATTACATGGTGGAATAAGTACTGGATGCCTGATGAGCAAAAGAAGCACAGCTGCTCCCTTGGGTTATTCATGTCTACACTGTTTTACATTGCTTCTATGGGTGGAATCGCATTCATGTACTCATCATACGGGATGAAATTATCGTGTGCTCTCAACATCTTTTTCATCACATGGACTGTGATTCTACTTGTCGTGATGATGGTGATATCACTACATTCAAAGGTAAACGGAGGTCTTTTATCTTCCGGAATTATGGCTTCATATCTTGTTTTCCTATGTTGGTCTGCCATCAGAAGTGAACCTGCAAATGAGGAATGCAACAGACAAAAACAAGGGAATGAAGGTCACGATTGGACTACAGTACTAGGCTTCCTGATCGCGATATGTTCTATTGTCATGGCGACTTTTTCAACTGGCATAGATTCACAGTCATTTCCGTTTTACAAAGATCAAGTTCGAGAGGATGACGACATCCCTTACAAGTACGGATTTTTCCACCTAACATTTTCCTTGGGGTGCATGTATTTTGCGATGTTGTTCATCAGTTGGAACCTCAGTAACTCCGCTAAGAAGTGGAGCATCGATGTCGGATGGACTAGTACATGGGTAAAAATCGTCAACGAATGGTTTGCAGCTTCAGTATTGTTATGGACGTTGATTTCGCCGGCGGTGAGGCAGTCGAAAGTGATGGATCGTGAAGAGGCTGTGCAGGAGATTGATAACTCAGACGTAGCGGTTGACCTAGTCCAAGCCAGTGGCCATGGGCCAATCCTTGAGATGTACATGCATGACATCTTGGGAGGCAGCAGCCCCACAGCTAGGCCCATCACTGGTCTACTTGGCAACATCTACGGTGGCCAAGTGCCCTTTGCCAGGCCCATAGGCTTCCTGCCGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

52.61

Weight (kDa)

7.55

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 35 - 310 2.9e-51 Serine incorporator (Serinc)
Serinc PF03348 317 - 391 3.9e-15 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 808
AccI GTMKAC 2 cut(s) 572, 1333
AccII CGCG 3 cut(s) 180, 237, 878
AccIII TCCGGA 1 cut(s) 743
AciI CCGC 5 cut(s) 237, 1062, 1166, 1232, 1391
AclWI GGATC 2 cut(s) 484, 1197
AcoI YGGCCR 2 cut(s) 1255, 1354
AcsI RAATTY 2 cut(s) 231, 437
AcuI CTGAAG 2 cut(s) 36, 1119
AfaI GTAC 7 cut(s) 256, 518, 617, 861, 983, 1099, 1280
AfiI CCNNNNNNNGG 4 cut(s) 259, 1317, 1328, 1371
AgsI TTSAA 6 cut(s) 26, 364, 425, 476, 717, 909
AhlI ACTAGT 1 cut(s) 1094
AjnI CCWGG 1 cut(s) 1370
AluBI AGCT 6 cut(s) 29, 208, 329, 549, 1133, 1316
AluI AGCT 6 cut(s) 29, 208, 329, 549, 1133, 1316
Alw21I GWGCWC 1 cut(s) 649
AlwI GGATC 2 cut(s) 484, 1197
Aor13HI TCCGGA 1 cut(s) 743
AoxI GGCC 5 cut(s) 1255, 1262, 1319, 1354, 1373
ApeKI GCWGC 6 cut(s) 98, 115, 549, 1130, 1302, 1305
ApoI RAATTY 2 cut(s) 231, 437
ArsI GACNNNNNNTTYG 2 cut(s) 1141, 1173
AspS9I GGNCC 3 cut(s) 1262, 1320, 1374
AsuHPI GGTGA 3 cut(s) 446, 712, 1180
BaeGI GKGCMC 1 cut(s) 1365
BalI TGGCCA 2 cut(s) 1257, 1356
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 649
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 6 cut(s) 102, 110, 536, 1142, 1314, 1317
BccI CCATC 5 cut(s) 691, 794, 1083, 1180, 1331
BcgI CGANNNNNNTGC 4 cut(s) 1066, 1100, 1109, 1143
BciT130I CCWGG 1 cut(s) 1372
BcuI ACTAGT 1 cut(s) 1094
BfaI CTAG 4 cut(s) 863, 1095, 1241, 1317
BfmI CTRYAG 1 cut(s) 855
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 7 cut(s) 99, 116, 550, 1131, 1303, 1306, 1391
BlsI GCNGC 7 cut(s) 100, 117, 551, 1132, 1304, 1307, 1392
BmcAI AGTACT 2 cut(s) 518, 861
Bme1390I CCNGG 1 cut(s) 1372
BmgT120I GGNCC 3 cut(s) 1262, 1320, 1374
BmiI GGNNCC 2 cut(s) 396, 1049
BmrFI CCNGG 1 cut(s) 1372
BmsI GCATC 3 cut(s) 311, 513, 1086
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 1292
Bsa29I ATCGAT 1 cut(s) 1080
BsaJI CCNNGG 4 cut(s) 47, 556, 1008, 1258
BsaWI WCCGGW 1 cut(s) 743
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 1317, 1328, 1371
Bse118I RCCGGY 1 cut(s) 1162
Bse1I ACTGG 5 cut(s) 493, 524, 916, 1251, 1333
Bse3DI GCAATG 2 cut(s) 340, 585
BseAI TCCGGA 1 cut(s) 743
BseBI CCWGG 1 cut(s) 1372
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 4 cut(s) 47, 556, 1008, 1258
BseGI GGATG 6 cut(s) 405, 528, 636, 967, 969, 1094
BseLI CCNNNNNNNGG 4 cut(s) 259, 1317, 1328, 1371
BseMI GCAATG 2 cut(s) 340, 585
BseMII CTCAG 4 cut(s) 54, 218, 1066, 1236
BseNI ACTGG 5 cut(s) 493, 524, 916, 1251, 1333
BseSI GKGCMC 1 cut(s) 1365
BseXI GCAGC 6 cut(s) 102, 110, 536, 1142, 1314, 1317
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 2 cut(s) 474, 1226
Bsh1236I CGCG 3 cut(s) 180, 237, 878
BshFI GGCC 5 cut(s) 1257, 1264, 1321, 1356, 1375
BshVI ATCGAT 1 cut(s) 1080
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 2 cut(s) 744, 1163
BsiWI CGTACG 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 259, 1317, 1328, 1371
BsmI GAATGC 3 cut(s) 343, 608, 818
BsnI GGCC 5 cut(s) 1257, 1264, 1321, 1356, 1375
Bsp1286I GDGCHC 3 cut(s) 124, 649, 1365
Bsp13I TCCGGA 1 cut(s) 743
Bsp1407I TGTACA 1 cut(s) 1278
Bsp143I GATC 4 cut(s) 489, 873, 946, 1189
Bsp19I CCATGG 1 cut(s) 1258
Bsp68I TCGCGA 2 cut(s) 180, 878
BspACI CCGC 5 cut(s) 237, 1062, 1166, 1232, 1391
BspANI GGCC 5 cut(s) 1257, 1264, 1321, 1356, 1375
BspCNI CTCAG 4 cut(s) 55, 217, 1065, 1235
BspDI ATCGAT 1 cut(s) 1080
BspEI TCCGGA 1 cut(s) 743
BspFNI CGCG 3 cut(s) 180, 237, 878
BspLI GGNNCC 2 cut(s) 396, 1049
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 2 cut(s) 484, 1197
BsrDI GCAATG 2 cut(s) 340, 585
BsrFI RCCGGY 1 cut(s) 1162
BsrGI TGTACA 1 cut(s) 1278
BsrI ACTGG 5 cut(s) 493, 524, 916, 1251, 1333
BssAI RCCGGY 1 cut(s) 1162
BssECI CCNNGG 4 cut(s) 47, 556, 1008, 1258
BssMI GATC 4 cut(s) 489, 873, 946, 1189
BssSI CACGAG 1 cut(s) 444
BssT1I CCWWGG 4 cut(s) 47, 556, 1008, 1258
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 1372
Bst4CI ACNGT 6 cut(s) 434, 579, 676, 859, 927, 1352
Bst6I CTCTTC 2 cut(s) 407, 1191
BstAUI TGTACA 1 cut(s) 1278
BstC8I GCNNGC 3 cut(s) 120, 331, 1164
BstDEI CTNAG 6 cut(s) 63, 204, 320, 1052, 1065, 1222
BstDSI CCRYGG 1 cut(s) 1258
BstENI CCTNNNNNAGG 1 cut(s) 1369
BstF5I GGATG 6 cut(s) 405, 528, 636, 967, 969, 1094
BstFNI CGCG 3 cut(s) 180, 237, 878
BstKTI GATC 4 cut(s) 492, 876, 949, 1192
BstMBI GATC 4 cut(s) 489, 873, 946, 1189
BstMWI GCNNNNNNNGC 2 cut(s) 532, 541
BstNI CCWGG 1 cut(s) 1372
BstNSI RCATGY 2 cut(s) 1021, 1285
BstSCI CCNGG 1 cut(s) 1370
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 1 cut(s) 1365
BstUI CGCG 3 cut(s) 180, 237, 878
BstV1I GCAGC 6 cut(s) 102, 110, 536, 1142, 1314, 1317
BstXI CCANNNNNNTGG 1 cut(s) 1253
Bsu15I ATCGAT 1 cut(s) 1080
BsuRI GGCC 5 cut(s) 1257, 1264, 1321, 1356, 1375
BsuTUI ATCGAT 1 cut(s) 1080
BtgI CCRYGG 1 cut(s) 1258
BtgZI GCGATG 1 cut(s) 1043
BtsCI GGATG 6 cut(s) 405, 528, 636, 967, 969, 1094
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 4 cut(s) 297, 575, 1258, 1326
BtuMI TCGCGA 2 cut(s) 180, 878
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 3 cut(s) 120, 331, 1164
Cfr10I RCCGGY 1 cut(s) 1162
Cfr13I GGNCC 3 cut(s) 1262, 1320, 1374
ClaI ATCGAT 1 cut(s) 1080
Csp6I GTAC 7 cut(s) 255, 517, 616, 860, 982, 1098, 1279
CviQI GTAC 7 cut(s) 255, 517, 616, 860, 982, 1098, 1279
DdeI CTNAG 6 cut(s) 63, 204, 320, 1052, 1065, 1222
DpnI GATC 4 cut(s) 491, 875, 948, 1191
DpnII GATC 4 cut(s) 489, 873, 946, 1189
DraI TTTAAA 1 cut(s) 220
EaeI YGGCCR 2 cut(s) 1255, 1354
Eam1104I CTCTTC 2 cut(s) 407, 1191
EarI CTCTTC 2 cut(s) 407, 1191
Eco130I CCWWGG 4 cut(s) 47, 556, 1008, 1258
Eco24I GRGCYC 1 cut(s) 124
Eco32I GATATC 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 36, 1119
EcoNI CCTNNNNNAGG 1 cut(s) 1369
EcoRI GAATTC 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 1370
EcoRV GATATC 1 cut(s) 705
EcoT14I CCWWGG 4 cut(s) 47, 556, 1008, 1258
EcoT22I ATGCAT 1 cut(s) 1287
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 4 cut(s) 47, 556, 1008, 1258
FblI GTMKAC 2 cut(s) 572, 1333
Fnu4HI GCNGC 7 cut(s) 99, 116, 550, 1131, 1303, 1306, 1391
FokI GGATG 6 cut(s) 392, 535, 643, 956, 974, 1101
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 7 cut(s) 99, 116, 550, 1131, 1303, 1306, 1391
FspBI CTAG 4 cut(s) 863, 1095, 1241, 1317
GluI GCNGC 7 cut(s) 99, 116, 550, 1131, 1303, 1306, 1391
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 5 cut(s) 1257, 1264, 1321, 1356, 1375
HapII CCGG 2 cut(s) 744, 1163
HincII GTYRAC 2 cut(s) 1117, 1237
HindII GTYRAC 2 cut(s) 1117, 1237
HinfI GANTC 5 cut(s) 65, 360, 603, 679, 920
HpaII CCGG 2 cut(s) 744, 1163
HphI GGTGA 3 cut(s) 446, 712, 1180
Hpy166II GTNNAC 6 cut(s) 573, 724, 797, 1117, 1237, 1334
Hpy188I TCNGA 4 cut(s) 64, 791, 1088, 1225
Hpy188III TCNNGA 9 cut(s) 179, 348, 691, 744, 845, 871, 877, 956, 1193
Hpy8I GTNNAC 6 cut(s) 573, 724, 797, 1117, 1237, 1334
HpyAV CCTTC 2 cut(s) 11, 833
HpyCH4III ACNGT 6 cut(s) 434, 579, 676, 859, 927, 1352
HpyCH4IV ACGT 2 cut(s) 1151, 1227
HpyCH4V TGCA 9 cut(s) 302, 372, 455, 803, 816, 1017, 1130, 1207, 1285
HpyF10VI GCNNNNNNNGC 2 cut(s) 532, 541
HpyF3I CTNAG 6 cut(s) 63, 204, 320, 1052, 1065, 1222
HpySE526I ACGT 2 cut(s) 1151, 1227
Kpn2I TCCGGA 1 cut(s) 743
KroI GCCGGC 1 cut(s) 1162
KroNI GCCGGC 1 cut(s) 1164
Kzo9I GATC 4 cut(s) 489, 873, 946, 1189
LmnI GCTCC 4 cut(s) 73, 213, 557, 1074
Lsp1109I GCAGC 6 cut(s) 102, 110, 536, 1142, 1314, 1317
LweI GCATC 3 cut(s) 311, 513, 1086
MaeI CTAG 4 cut(s) 863, 1095, 1241, 1317
MaeII ACGT 2 cut(s) 1151, 1227
MaeIII GTNAC 2 cut(s) 842, 1055
MalI GATC 4 cut(s) 491, 875, 948, 1191
MboI GATC 4 cut(s) 489, 873, 946, 1189
MboII GAAGA 7 cut(s) 65, 136, 260, 394, 464, 732, 1208
MhlI GDGCHC 3 cut(s) 124, 649, 1365
MlsI TGGCCA 2 cut(s) 1257, 1356
MluCI AATT 5 cut(s) 231, 425, 437, 635, 747
MluNI TGGCCA 2 cut(s) 1257, 1356
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 2 cut(s) 1025, 1066
Mox20I TGGCCA 2 cut(s) 1257, 1356
Mph1103I ATGCAT 1 cut(s) 1287
MreI CGCCGGCG 1 cut(s) 1162
MroI TCCGGA 1 cut(s) 743
MroNI GCCGGC 1 cut(s) 1162
MscI TGGCCA 2 cut(s) 1257, 1356
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 2 cut(s) 1257, 1356
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 2 cut(s) 744, 1163
MspR9I CCNGG 1 cut(s) 1372
Mva1269I GAATGC 3 cut(s) 343, 608, 818
MvaI CCWGG 1 cut(s) 1372
MvnI CGCG 3 cut(s) 180, 237, 878
MwoI GCNNNNNNNGC 2 cut(s) 532, 541
NaeI GCCGGC 1 cut(s) 1164
NcoI CCATGG 1 cut(s) 1258
NdeII GATC 4 cut(s) 489, 873, 946, 1189
NgoMIV GCCGGC 1 cut(s) 1162
NlaIV GGNNCC 2 cut(s) 396, 1049
NmuCI GTSAC 1 cut(s) 842
NruI TCGCGA 2 cut(s) 180, 878
NsiI ATGCAT 1 cut(s) 1287
NspI RCATGY 2 cut(s) 1021, 1285
PctI GAATGC 3 cut(s) 343, 608, 818
PdiI GCCGGC 1 cut(s) 1164
PfeI GAWTC 4 cut(s) 360, 603, 679, 920
Pfl23II CGTACG 1 cut(s) 254
PflFI GACNNNGTC 1 cut(s) 1241
PkrI GCNGC 7 cut(s) 100, 117, 551, 1132, 1304, 1307, 1392
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 1370
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 1370
PspLI CGTACG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 396, 1049
PspPI GGNCC 3 cut(s) 1262, 1320, 1374
PsyI GACNNNGTC 1 cut(s) 1241
PvuII CAGCTG 1 cut(s) 549
RruI TCGCGA 2 cut(s) 180, 878
RsaI GTAC 7 cut(s) 256, 518, 617, 861, 983, 1099, 1280
RsaNI GTAC 7 cut(s) 255, 517, 616, 860, 982, 1098, 1279
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 7 cut(s) 99, 116, 550, 1131, 1303, 1306, 1391
Sau3AI GATC 4 cut(s) 489, 873, 946, 1189
Sau96I GGNCC 3 cut(s) 1262, 1320, 1374
ScaI AGTACT 2 cut(s) 518, 861
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 1372
SduI GDGCHC 3 cut(s) 124, 649, 1365
SfaNI GCATC 3 cut(s) 311, 513, 1086
SfcI CTRYAG 1 cut(s) 855
SgrAI CRCCGGYG 1 cut(s) 1162
SmlI CTYRAG 1 cut(s) 1271
SmoI CTYRAG 1 cut(s) 1271
SpeI ACTAGT 1 cut(s) 1094
Sse9I AATT 5 cut(s) 231, 425, 437, 635, 747
SsiI CCGC 5 cut(s) 237, 1062, 1166, 1232, 1391
SspMI CTAG 4 cut(s) 863, 1095, 1241, 1317
StyD4I CCNGG 1 cut(s) 1370
StyI CCWWGG 4 cut(s) 47, 556, 1008, 1258
TaaI ACNGT 6 cut(s) 434, 579, 676, 859, 927, 1352
TaiI ACGT 2 cut(s) 1154, 1230
TaqI TCGA 3 cut(s) 955, 1080, 1178
TasI AATT 5 cut(s) 231, 425, 437, 635, 747
TatI WGTACW 5 cut(s) 516, 615, 859, 1097, 1278
TauI GCSGC 1 cut(s) 1393
TfiI GAWTC 4 cut(s) 360, 603, 679, 920
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 4 cut(s) 304, 582, 1258, 1333
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 6 cut(s) 98, 115, 549, 1130, 1302, 1305
Tsp45I GTSAC 1 cut(s) 842
TspGWI ACGGA 4 cut(s) 242, 741, 924, 999
TspRI CASTG 4 cut(s) 304, 582, 1258, 1333
Tth111I GACNNNGTC 1 cut(s) 1241
XagI CCTNNNNNAGG 1 cut(s) 1369
XapI RAATTY 2 cut(s) 231, 437
XceI RCATGY 2 cut(s) 1021, 1285
XmiI GTMKAC 2 cut(s) 572, 1333
XspI CTAG 4 cut(s) 863, 1095, 1241, 1317
ZrmI AGTACT 2 cut(s) 518, 861
Zsp2I ATGCAT 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.