Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003509

Physical Location & Seq

Genomic Coordinates Reverse (-)

4715751 .. 4721177

Gene Structure 5427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05470.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAGGACATCAGCTGAACTAGTTGAACTTGAACCTACTGGTGCGATTATTCTTTGGGAAGGAGTACCTGTATCATTGGAGCAAAGGAGATTTGATCACTTGCCAGAAAGGAAAAAGGCTCTGCGAGCCCGTTATGCATATGGCATAATCTTCTTAATTACAAATCTTTGTGCTTGGTTTGTTCGTGACTATGGGCAAAGGGTGTTACCTGAGCTCCACTATTTGAAATCTTGTGGACATGGTGGAAGTGATTGTTTCCATACACAAGGAGTTCTGCGTGTGAGTTTAGGATGCTTTATATTTTTCTTTCTAATGTTCCTGACAACATGTAAAACAAGAAAACTATATAAAGCTCGCAATGCATGGCATTCTGGGTGGTGGGGATCAAAGTTGTTCGTATGGCTTGTATCGATGATGATTCCGATATTCTGCCCTTCTGATTATATTCATATATATGGTGAATTTGCTCGTGTCGGTGCTGGGATTTTTCTTGTTCTCCAGCTTATGAGTGTGATCCAGTTTATTAGATGGTGGAATAAGTACTGGATGCCTGACGAGCAAAAGAAGCAGAGCTGCTCCCTTGGATTGTTCATGTCTACATTGTTCTACATCGGATCCCTGTGTGGAATTGCAGTTATGTACTCATCCTATGCGATGAAATCCTCCTGTTCTCTCAACATTTTTTTCATCATATGGACTGGAGTTCTACTTATCGTAATGATGTCTGTATCCCTACATTCTAAGGTAAACAGAGGCCTTTTATCTTCTGGAATCATGGCTTCATACATTGTTTTCCTATGTTGGTCTGCTATCAGAAGTGAACCTGCCAATGAGGAATGCAACCCACAAAAACAGGAGAATGTTAATGGTGACTGGACTACCATACTAGGCTTCCTGATCGCAATATGTGCTATTGTCATGGCAACTTTTTCCACTGGTGTTGATTCACAATCATTTCAGTTTCGCCATAGCGAAGTCCAGCATGAAGATGACATCCCTTACAAGTATGGGTTCTTTCACCTAGTATTTTCCTTGGGGGGCATGTATTTTGCAATGCTATTCATCAGTTGGAACCTCAATAACTCAGCTAAGAAGTGGAGCATTGATGTTGGCTGGGCTAGTACATGGGTAAAGATTGTCAATGAGTGGTTTGCAGCCTCGATATATATATGGACATTGTTTTCCCCAGTTCTCAGGCAGTCCAAAGTTATGGATCATGAAGAACCTATTCAGGAGCTTGATAGCTCAGATGTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Serinc

Protein Analysis

420

Amino Acids

48.18

Weight (kDa)

8.19

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	2 - 220	7.4e-44	Serine incorporator (Serinc)
Serinc	PF03348	222 - 295	4.9e-17	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205
fragaria_vesca	FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470
malus_domestica	MD13G1230200.v1.1
prunus_persica	Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396601 RchiOBHm_Chr4g0421091
rosa_laevigata	RLG00000009517
rosa_multiflora	Rmu_sc0006586.1_g000024 Rmu_sc0010969.1_g000002
rosa_roxburghii	Rroxscaffold_5G00341460
rosa_rugosa	Rorug03G0348500
rosa_samantha	Rh2CG182400 Rh4AG070700 Rh4BG068600 Rh4CG076400 Rh4DG065700
rosa_wichuraiana	Rw4G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	596
AclWI	GGATC	5 cut(s)	391, 508, 609, 622, 1221
AcsI	RAATTY	1 cut(s)	461
AfaI	GTAC	4 cut(s)	66, 542, 641, 1123
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	26, 32, 226
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	8 cut(s)	14, 214, 353, 502, 573, 1088, 1237, 1245
AluI	AGCT	8 cut(s)	14, 214, 353, 502, 573, 1088, 1237, 1245
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	5 cut(s)	391, 508, 609, 622, 1221
AoxI	GGCC	1 cut(s)	754
ApeKI	GCWGC	2 cut(s)	573, 1154
ApoI	RAATTY	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	1227
AsuHPI	GGTGA	3 cut(s)	470, 881, 1010
BamHI	GGATCC	1 cut(s)	614
BanII	GRGCYC	2 cut(s)	130, 216
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	560, 1166
BccI	CCATC	1 cut(s)	522
BciVI	GTATCC	1 cut(s)	739
BclI	TGATCA	1 cut(s)	94
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	4 cut(s)	20, 887, 1022, 1119
BfuAI	ACCTGC	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	739
BisI	GCNGC	2 cut(s)	574, 1155
BlsI	GCNGC	2 cut(s)	575, 1156
BmcAI	AGTACT	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	616, 1073
BmrI	ACTGGG	1 cut(s)	1181
BmsI	GCATC	2 cut(s)	281, 537
BmuI	ACTGGG	1 cut(s)	1181
BpmI	CTGGAG	2 cut(s)	482, 720
Bpu10I	CCTNAGC	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	580, 1032
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 198, 228
Bse1I	ACTGG	7 cut(s)	43, 517, 548, 703, 878, 940, 1187
Bse3DI	GCAATG	2 cut(s)	364, 1059
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	580, 1032
BseGI	GGATG	4 cut(s)	296, 552, 644, 993
BseMI	GCAATG	2 cut(s)	364, 1059
BseMII	CTCAG	4 cut(s)	201, 1098, 1207, 1260
BseNI	ACTGG	7 cut(s)	43, 517, 548, 703, 878, 940, 1187
BseXI	GCAGC	2 cut(s)	560, 1166
BseYI	CCCAGC	2 cut(s)	479, 1113
BshFI	GGCC	1 cut(s)	756
BshVI	ATCGAT	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	367, 842
BsnI	GGCC	1 cut(s)	756
Bsp1286I	GDGCHC	2 cut(s)	130, 216
Bsp143I	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	4 cut(s)	202, 1097, 1206, 1259
BspDI	ATCGAT	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	1216
BspLI	GGNNCC	2 cut(s)	616, 1073
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	5 cut(s)	391, 508, 609, 622, 1221
BsrDI	GCAATG	2 cut(s)	364, 1059
BsrI	ACTGG	7 cut(s)	43, 517, 548, 703, 878, 940, 1187
BssECI	CCNNGG	2 cut(s)	580, 1032
BssMI	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	580, 1032
Bst2BI	CACGAG	1 cut(s)	468
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstC8I	GCNNGC	2 cut(s)	126, 355
BstDEI	CTNAG	6 cut(s)	210, 741, 1084, 1089, 1193, 1246
BstF5I	GGATG	4 cut(s)	296, 552, 644, 993
BstKTI	GATC	6 cut(s)	97, 386, 516, 617, 900, 1216
BstMBI	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 134, 359, 556, 565, 908
BstNSI	RCATGY	2 cut(s)	330, 1045
BstV1I	GCAGC	2 cut(s)	560, 1166
BstX2I	RGATCY	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	756
BsuTUI	ATCGAT	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	668
BtsCI	GGATG	4 cut(s)	296, 552, 644, 993
BtsIMutI	CAGTG	1 cut(s)	933
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	126, 355
CciI	TCATGA	1 cut(s)	1216
ClaI	ATCGAT	1 cut(s)	410
Csp6I	GTAC	4 cut(s)	65, 541, 640, 1122
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviQI	GTAC	4 cut(s)	65, 541, 640, 1122
DdeI	CTNAG	6 cut(s)	210, 741, 1084, 1089, 1193, 1246
DpnI	GATC	6 cut(s)	96, 385, 515, 616, 899, 1215
DpnII	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	580, 1032
Eco147I	AGGCCT	1 cut(s)	756
Eco24I	GRGCYC	2 cut(s)	130, 216
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	580, 1032
EcoT22I	ATGCAT	2 cut(s)	139, 364
EcoT38I	GRGCYC	2 cut(s)	130, 216
ErhI	CCWWGG	2 cut(s)	580, 1032
FauNDI	CATATG	2 cut(s)	139, 692
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	596
Fnu4HI	GCNGC	2 cut(s)	574, 1155
FokI	GGATG	4 cut(s)	303, 559, 631, 980
FriOI	GRGCYC	2 cut(s)	130, 216
Fsp4HI	GCNGC	2 cut(s)	574, 1155
FspBI	CTAG	4 cut(s)	20, 887, 1022, 1119
GluI	GCNGC	2 cut(s)	574, 1155
GsaI	CCCAGC	2 cut(s)	483, 1117
GsuI	CTGGAG	2 cut(s)	482, 720
HaeIII	GGCC	1 cut(s)	756
HinfI	GANTC	3 cut(s)	418, 771, 944
HphI	GGTGA	3 cut(s)	470, 881, 1010
Hpy166II	GTNNAC	4 cut(s)	236, 597, 748, 821
Hpy188I	TCNGA	5 cut(s)	423, 439, 614, 815, 1249
Hpy188III	TCNNGA	6 cut(s)	185, 319, 768, 895, 1217, 1232
Hpy8I	GTNNAC	4 cut(s)	236, 597, 748, 821
HpyAV	CCTTC	2 cut(s)	53, 444
HpyCH4V	TGCA	6 cut(s)	137, 362, 632, 840, 1052, 1154
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 134, 359, 556, 565, 908
HpyF3I	CTNAG	6 cut(s)	210, 741, 1084, 1089, 1193, 1246
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
LmnI	GCTCC	5 cut(s)	79, 219, 581, 1098, 1234
Lsp1109I	GCAGC	2 cut(s)	560, 1166
LweI	GCATC	2 cut(s)	281, 537
MaeI	CTAG	4 cut(s)	20, 887, 1022, 1119
MaeIII	GTNAC	3 cut(s)	185, 204, 869
MalI	GATC	6 cut(s)	96, 385, 515, 616, 899, 1215
MboI	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
MboII	GAAGA	4 cut(s)	142, 756, 998, 1232
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	2 cut(s)	130, 216
MluCI	AATT	3 cut(s)	156, 461, 627
MmeI	TCCRAC	1 cut(s)	1049
MnlI	CCTC	5 cut(s)	673, 746, 826, 1085, 1168
Mph1103I	ATGCAT	2 cut(s)	139, 364
MroXI	GAANNNNTTC	1 cut(s)	1227
MseI	TTAA	2 cut(s)	155, 864
MslI	CAYNNNNRTG	2 cut(s)	453, 987
MspA1I	CMGCKG	1 cut(s)	14
Mva1269I	GAATGC	2 cut(s)	367, 842
MwoI	GCNNNNNNNGC	6 cut(s)	125, 134, 359, 556, 565, 908
NdeI	CATATG	2 cut(s)	139, 692
NdeII	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
NlaIV	GGNNCC	2 cut(s)	616, 1073
NmuCI	GTSAC	2 cut(s)	185, 869
NsiI	ATGCAT	2 cut(s)	139, 364
NspI	RCATGY	2 cut(s)	330, 1045
PagI	TCATGA	1 cut(s)	1216
PceI	AGGCCT	1 cut(s)	756
PciI	ACATGT	1 cut(s)	326
PctI	GAATGC	2 cut(s)	367, 842
PdmI	GAANNNNTTC	1 cut(s)	1227
PfeI	GAWTC	3 cut(s)	418, 771, 944
PkrI	GCNGC	2 cut(s)	575, 1156
PscI	ACATGT	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	216
PspFI	CCCAGC	2 cut(s)	479, 1113
PspN4I	GGNNCC	2 cut(s)	616, 1073
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	4 cut(s)	66, 542, 641, 1123
RsaNI	GTAC	4 cut(s)	65, 541, 640, 1122
RseI	CAYNNNNRTG	2 cut(s)	453, 987
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	155, 864
SatI	GCNGC	2 cut(s)	574, 1155
Sau3AI	GATC	6 cut(s)	94, 383, 513, 614, 897, 1213
ScaI	AGTACT	1 cut(s)	542
SduI	GDGCHC	2 cut(s)	130, 216
SfaNI	GCATC	2 cut(s)	281, 537
SmiMI	CAYNNNNRTG	2 cut(s)	453, 987
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	3 cut(s)	156, 461, 627
SseBI	AGGCCT	1 cut(s)	756
SspMI	CTAG	4 cut(s)	20, 887, 1022, 1119
SstI	GAGCTC	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	756
StyI	CCWWGG	2 cut(s)	580, 1032
TaqI	TCGA	2 cut(s)	410, 1160
TasI	AATT	3 cut(s)	156, 461, 627
TatI	WGTACW	3 cut(s)	540, 639, 1121
TfiI	GAWTC	3 cut(s)	418, 771, 944
Tru1I	TTAA	2 cut(s)	155, 864
Tru9I	TTAA	2 cut(s)	155, 864
TscAI	CASTG	1 cut(s)	940
TseFI	GTSAC	2 cut(s)	185, 869
TseI	GCWGC	2 cut(s)	573, 1154
Tsp45I	GTSAC	2 cut(s)	185, 869
TspDTI	ATGAA	8 cut(s)	437, 580, 671, 676, 771, 999, 1051, 1233
TspRI	CASTG	1 cut(s)	940
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	2 cut(s)	330, 1045
XmiI	GTMKAC	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	1227
XspI	CTAG	4 cut(s)	20, 887, 1022, 1119
ZrmI	AGTACT	1 cut(s)	542
Zsp2I	ATGCAT	2 cut(s)	139, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.