Rh4CG076400

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003509
Physical Location & Seq
Forward (+)
13894297 .. 13900118
5822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG076400.1

Sequence Viewer

Length: 975 bp
ATGAGTATGTCTGCTGAAGTAGTTAAACCTACGGGTGAGGTTATTCTTTGGGAAGTAGTACCTGTATCATTGGAGCAAAGGAGATTTGATCACTTGACAGAAAGGAAAAAGGCTTTACGAGCCCGTTATGTATATGGCATAATCTTCTTAATAACAAATCTTTGTGCTTGGTTTGTTCGTGATTATGGGCAAAGGGTGTTACCTGAGCTCCACTATTTGAAATCTTGTGGACATGGTGGAAGTGATTGTTTTCATACACAAGGAGTTCTCCGTGTGAGTTTAGGATGCTTTATATTTTTCTTCCTAATGTTCCTGACAACATGTAAAACAAGAAAACTATATAAAGCTCGCAATGCATGGCATTCTGGGTGGTGGGGATCAAAGCTGTGTGCATGGCTTGTATCAATGATGATTCCGCTCTTCTGTCCTTCCAATTACATTCAGTTATATGGTGAACTTGCTCGTGTCGGTGCAGGGATTTTTCTAGTTCTCCAGCTTATAAGTGTGATCCAGTTTATTAGATGGTGGAATAAGTACTGGATGCCCGATGAGCAAAAGAAGCAGAGCTGCTCCCTTGGATTGTTCATGTCTACATTGTTTTACATCGCGTCGATGTGTGGAATTGCAGTTATGTATTCATCATATGCGATGAAATCATCATGTGCTCTCAACATCTTTTTCATCATATGGACTGCAGTTCTACTTATCGTAATGATGTCTGTGTCCCTACATTCCAAGGTAAACAGAGGTCTTTTATCTTCTGGAATCATGGCTTCATACATTGTTTTCCTATGTTGGTCTGCTATCAGAAGTGAACCTGCCAATGAGGAATGCAACCCACAAAGACAAGGGAATGCAAATGGTGATTGGACTACCATACTAGGCTTCCTGATCGCAATATGTGCTATTGTCATGGCAACTTTTTCCACTGGTATTGATTCACAATCATTTCAGGCGAGTAATTTTATGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent Serinc

Protein Analysis

324

Amino Acids

36.9

Weight (kDa)

9.1

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 36 - 319 3.2e-57 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 590
AccII CGCG 1 cut(s) 608
AciI CCGC 1 cut(s) 416
AclWI GGATC 2 cut(s) 385, 502
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 60, 536
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 5 cut(s) 208, 347, 385, 496, 567
AluI AGCT 5 cut(s) 208, 347, 385, 496, 567
Alw21I GWGCWC 2 cut(s) 210, 667
AlwI GGATC 2 cut(s) 385, 502
ApeKI GCWGC 1 cut(s) 567
AsuHPI GGTGA 3 cut(s) 47, 464, 875
BanII GRGCYC 2 cut(s) 124, 210
BauI CACGAG 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 210, 667
BbvI GCAGC 1 cut(s) 554
BccI CCATC 1 cut(s) 516
BclI TGATCA 1 cut(s) 88
BfaI CTAG 2 cut(s) 485, 881
BfmI CTRYAG 1 cut(s) 693
BfuAI ACCTGC 1 cut(s) 826
BisI GCNGC 1 cut(s) 568
BlsI GCNGC 1 cut(s) 569
BmcAI AGTACT 1 cut(s) 536
BmsI GCATC 2 cut(s) 275, 531
BpmI CTGGAG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 574, 735
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse1I ACTGG 3 cut(s) 511, 542, 934
Bse3DI GCAATG 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 574, 735
BseGI GGATG 2 cut(s) 290, 546
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 3 cut(s) 511, 542, 934
BseXI GCAGC 1 cut(s) 554
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 608
BsiHKAI GWGCWC 2 cut(s) 210, 667
BslFI GGGAC 1 cut(s) 709
BsmFI GGGAC 1 cut(s) 709
BsmI GAATGC 3 cut(s) 361, 836, 859
Bsp1286I GDGCHC 3 cut(s) 124, 210, 667
Bsp143I GATC 4 cut(s) 88, 377, 507, 891
BspACI CCGC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 608
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 2 cut(s) 385, 502
BspQI GCTCTTC 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 3 cut(s) 511, 542, 934
BssECI CCNNGG 2 cut(s) 574, 735
BssMI GATC 4 cut(s) 88, 377, 507, 891
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 2 cut(s) 574, 735
Bst2BI CACGAG 1 cut(s) 462
Bst6I CTCTTC 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 290, 546
BstFNI CGCG 1 cut(s) 608
BstKTI GATC 4 cut(s) 91, 380, 510, 894
BstMBI GATC 4 cut(s) 88, 377, 507, 891
BstMWI GCNNNNNNNGC 5 cut(s) 119, 353, 550, 559, 902
BstNSI RCATGY 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 693
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 1 cut(s) 554
BtgZI GCGATG 2 cut(s) 589, 662
BtsCI GGATG 2 cut(s) 290, 546
BtsIMutI CAGTG 1 cut(s) 927
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 1 cut(s) 349
CseI GACGC 1 cut(s) 597
Csp6I GTAC 2 cut(s) 59, 535
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviAII CATG 8 cut(s) 233, 321, 357, 393, 586, 660, 769, 913
CviQI GTAC 2 cut(s) 59, 535
DdeI CTNAG 1 cut(s) 204
DpnI GATC 4 cut(s) 90, 379, 509, 893
DpnII GATC 4 cut(s) 88, 377, 507, 891
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 574, 735
Eco24I GRGCYC 2 cut(s) 124, 210
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 574, 735
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 2 cut(s) 124, 210
ErhI CCWWGG 2 cut(s) 574, 735
FaeI CATG 8 cut(s) 236, 324, 360, 396, 589, 663, 772, 916
FaqI GGGAC 1 cut(s) 709
FatI CATG 8 cut(s) 232, 320, 356, 392, 585, 659, 768, 912
FauNDI CATATG 2 cut(s) 643, 686
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 1 cut(s) 568
FokI GGATG 2 cut(s) 297, 553
FriOI GRGCYC 2 cut(s) 124, 210
Fsp4HI GCNGC 1 cut(s) 568
FspBI CTAG 2 cut(s) 485, 881
GluI GCNGC 1 cut(s) 568
GsuI CTGGAG 1 cut(s) 476
HgaI GACGC 1 cut(s) 597
Hin1II CATG 8 cut(s) 236, 324, 360, 396, 589, 663, 772, 916
HinfI GANTC 3 cut(s) 412, 765, 938
HphI GGTGA 3 cut(s) 47, 464, 875
Hpy166II GTNNAC 5 cut(s) 230, 455, 591, 742, 815
Hpy188I TCNGA 1 cut(s) 809
Hpy188III TCNNGA 4 cut(s) 179, 313, 762, 889
Hpy8I GTNNAC 5 cut(s) 230, 455, 591, 742, 815
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 1 cut(s) 438
HpyCH4V TGCA 7 cut(s) 356, 392, 473, 626, 695, 834, 857
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 353, 550, 559, 902
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 8 cut(s) 236, 324, 360, 396, 589, 663, 772, 916
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 4 cut(s) 88, 377, 507, 891
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 3 cut(s) 73, 213, 575
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 2 cut(s) 275, 531
MaeI CTAG 2 cut(s) 485, 881
MaeIII GTNAC 1 cut(s) 198
MalI GATC 4 cut(s) 90, 379, 509, 893
MbiI CCGCTC 1 cut(s) 418
MboI GATC 4 cut(s) 88, 377, 507, 891
MboII GAAGA 4 cut(s) 136, 292, 412, 750
MhlI GDGCHC 3 cut(s) 124, 210, 667
MluCI AATT 3 cut(s) 433, 621, 961
MnlI CCTC 3 cut(s) 31, 740, 820
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 2 cut(s) 24, 149
Mva1269I GAATGC 3 cut(s) 361, 836, 859
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 5 cut(s) 119, 353, 550, 559, 902
NdeI CATATG 2 cut(s) 643, 686
NdeII GATC 4 cut(s) 88, 377, 507, 891
NlaIII CATG 8 cut(s) 236, 324, 360, 396, 589, 663, 772, 916
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 324
PciI ACATGT 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 425
PctI GAATGC 3 cut(s) 361, 836, 859
PfeI GAWTC 3 cut(s) 412, 765, 938
PkrI GCNGC 1 cut(s) 569
PscI ACATGT 1 cut(s) 320
PsiI TTATAA 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 697
RsaI GTAC 2 cut(s) 60, 536
RsaNI GTAC 2 cut(s) 59, 535
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 24, 149
SatI GCNGC 1 cut(s) 568
Sau3AI GATC 4 cut(s) 88, 377, 507, 891
ScaI AGTACT 1 cut(s) 536
SduI GDGCHC 3 cut(s) 124, 210, 667
SfaNI GCATC 2 cut(s) 275, 531
SfcI CTRYAG 1 cut(s) 693
Sse9I AATT 3 cut(s) 433, 621, 961
SsiI CCGC 1 cut(s) 416
SspMI CTAG 2 cut(s) 485, 881
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 2 cut(s) 574, 735
TaqI TCGA 1 cut(s) 611
TasI AATT 3 cut(s) 433, 621, 961
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 3 cut(s) 412, 765, 938
Tru1I TTAA 2 cut(s) 24, 149
Tru9I TTAA 2 cut(s) 24, 149
TscAI CASTG 1 cut(s) 934
TseI GCWGC 1 cut(s) 567
TspDTI ATGAA 6 cut(s) 242, 574, 627, 665, 670, 765
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 934
XceI RCATGY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 590
XspI CTAG 2 cut(s) 485, 881
ZrmI AGTACT 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.