Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003509

Physical Location & Seq

Genomic Coordinates Forward (+)

9889158 .. 9894876

Gene Structure 5719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTCCTGACAACATGTAAAACAAGAAAACTATATGAAGCTCGCAATGCATGGCATTCTGGGTGGTGGGGATCAAAGCTGTTTGCATGGCTTGTATCAATGATGATTCCGCTCTTCTGCCCTTCCAATTACATTCATTTATATGGTGAACTTGCTCGTGTCGGTGCAGGGATTTTTCTCGTTCTCCAGCTTATAAGTGTGATCCAATTTATTAGATGGTGGAATAAGTACTGGATGCCCGATGAGCAAAAGAAGCAGAGCTGCTCCCTTGGATTGTTCACGTCTACATTGTTTTACATCGCGTCGATGTGTGGAATTGCAGTTATGTATTCATCATATGCAATGAAATCCTCATGTGCTCTCAACATCTTTTTCATCATATGGACTGCAGTTCTACTTATCGTAATGATGTCTGTATCCCTACATTCCAAGGTAAACAGAGGTCTTTTATCTTCTGGAATCATGGCTTCATACATTGTTTTCCTATGTTGGTCTGCTATCAGAAGTGAACCTACCAATGAGGAATGCAACCCACAAAGACAAGGGAATGCAAATGGTGATTGGACTACCATACTAGGCTTCCTGATCGCAATATGTGCTATTGTCATGGCAACTTTTTCCACTGGTGTTGATTCACAATCATTTCAGTTTCGGCATAATGAAGTTCAACATGAAGATGACATTCCTTACAAGTATGAATTCTTCCACCTAGTATTTTCCTTGGGGGCCATGTATTTTGCAATGCTATACATCAGTTGGAATCTCAATAACTCAGCTAAGAAGTGGAGCATTGATGTTGGCTGGGCTAGTACATGGGTAAAGATTGTCAATGAGTGGTTTGCAGTCTCAATATATATATGGACATTGTTTTCCCCAGTTCTGAGGCAGTCCAAAGTTATGGATCATGAAGAACCTGTTCAGGAGATTGATAGCTCAGATGTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Serinc

Protein Analysis

315

Amino Acids

36.27

Weight (kDa)

7.02

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	2 - 220	3.9e-44	Serine incorporator (Serinc)
Serinc	PF03348	221 - 295	8.3e-17	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205
fragaria_vesca	FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470
malus_domestica	MD13G1230200.v1.1
prunus_persica	Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396601 RchiOBHm_Chr4g0421091
rosa_laevigata	RLG00000009517
rosa_multiflora	Rmu_sc0006586.1_g000024 Rmu_sc0010969.1_g000002
rosa_roxburghii	Rroxscaffold_5G00341460
rosa_rugosa	Rorug03G0348500
rosa_samantha	Rh2CG182400 Rh4AG070700 Rh4BG068600 Rh4CG076400 Rh4DG065700
rosa_wichuraiana	Rw4G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	1 cut(s)	302
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	3 cut(s)	79, 196, 909
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	2 cut(s)	230, 811
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	668
AjiI	CACGTC	1 cut(s)	282
AluBI	AGCT	6 cut(s)	41, 79, 190, 261, 776, 933
AluI	AGCT	6 cut(s)	41, 79, 190, 261, 776, 933
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	850
AlwI	GGATC	3 cut(s)	79, 196, 909
AoxI	GGCC	1 cut(s)	726
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	698
Asp700I	GAANNNNTTC	1 cut(s)	915
AspS9I	GGNCC	1 cut(s)	726
AsuHPI	GGTGA	2 cut(s)	158, 569
BarI	GAAGNNNNNNTAC	4 cut(s)	496, 528, 686, 718
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	928
BciVI	GTATCC	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	850
BfaI	CTAG	3 cut(s)	575, 710, 807
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmcAI	AGTACT	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	726
BmiI	GGNNCC	1 cut(s)	727
BmrI	ACTGGG	1 cut(s)	869
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	268, 429, 720
Bse1I	ACTGG	3 cut(s)	236, 628, 875
Bse3DI	GCAATG	3 cut(s)	52, 348, 747
BseDI	CCNNGG	3 cut(s)	268, 429, 720
BseGI	GGATG	1 cut(s)	240
BseMI	GCAATG	3 cut(s)	52, 348, 747
BseMII	CTCAG	3 cut(s)	786, 872, 948
BseNI	ACTGG	3 cut(s)	236, 628, 875
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	801
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	850
BsmI	GAATGC	3 cut(s)	55, 530, 553
BsnI	GGCC	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	71, 201, 585, 901
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	728
BspCNI	CTCAG	3 cut(s)	785, 873, 947
BspFNI	CGCG	1 cut(s)	302
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	1 cut(s)	727
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	79, 196, 909
BspQI	GCTCTTC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	3 cut(s)	52, 348, 747
BsrI	ACTGG	3 cut(s)	236, 628, 875
BssECI	CCNNGG	3 cut(s)	268, 429, 720
BssMI	GATC	4 cut(s)	71, 201, 585, 901
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	3 cut(s)	268, 429, 720
Bst2BI	CACGAG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	4 cut(s)	772, 777, 881, 934
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	302
BstKTI	GATC	4 cut(s)	74, 204, 588, 904
BstMAI	GTCTC	1 cut(s)	850
BstMBI	GATC	4 cut(s)	71, 201, 585, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 244, 253, 596
BstNSI	RCATGY	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	898
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	728
BtgZI	GCGATG	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	904
Cfr13I	GGNCC	1 cut(s)	726
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	229, 810
CspCI	CAANNNNNGTGG	2 cut(s)	610, 645
CviQI	GTAC	2 cut(s)	229, 810
DdeI	CTNAG	4 cut(s)	772, 777, 881, 934
DpnI	GATC	4 cut(s)	73, 203, 587, 903
DpnII	GATC	4 cut(s)	71, 201, 585, 901
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	3 cut(s)	268, 429, 720
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	3 cut(s)	268, 429, 720
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	3 cut(s)	268, 429, 720
FauNDI	CATATG	2 cut(s)	337, 380
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	3 cut(s)	575, 710, 807
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	805
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	728
HgaI	GACGC	1 cut(s)	291
HinfI	GANTC	4 cut(s)	106, 459, 632, 760
HphI	GGTGA	2 cut(s)	158, 569
Hpy166II	GTNNAC	5 cut(s)	149, 279, 285, 436, 509
Hpy188I	TCNGA	3 cut(s)	503, 882, 937
Hpy188III	TCNNGA	5 cut(s)	7, 456, 583, 905, 920
Hpy8I	GTNNAC	5 cut(s)	149, 279, 285, 436, 509
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 244, 253, 596
HpyF3I	CTNAG	4 cut(s)	772, 777, 881, 934
HpySE526I	ACGT	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	71, 201, 585, 901
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	269, 786
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	3 cut(s)	575, 710, 807
MaeII	ACGT	1 cut(s)	281
MalI	GATC	4 cut(s)	73, 203, 587, 903
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	4 cut(s)	71, 201, 585, 901
MboII	GAAGA	5 cut(s)	106, 444, 686, 694, 920
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	4 cut(s)	127, 206, 315, 698
MmeI	TCCRAC	1 cut(s)	737
MnlI	CCTC	4 cut(s)	361, 434, 514, 876
Mph1103I	ATGCAT	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	915
MslI	CAYNNNNRTG	2 cut(s)	141, 675
Mva1269I	GAATGC	3 cut(s)	55, 530, 553
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	4 cut(s)	47, 244, 253, 596
NdeI	CATATG	2 cut(s)	337, 380
NdeII	GATC	4 cut(s)	71, 201, 585, 901
NlaIV	GGNNCC	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	52
NspI	RCATGY	1 cut(s)	18
PagI	TCATGA	1 cut(s)	904
PciI	ACATGT	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	119
PctI	GAATGC	3 cut(s)	55, 530, 553
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	4 cut(s)	106, 459, 632, 760
PkrI	GCNGC	1 cut(s)	263
PscI	ACATGT	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	801
PspN4I	GGNNCC	1 cut(s)	727
PspPI	GGNCC	1 cut(s)	726
PstI	CTGCAG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	230, 811
RsaNI	GTAC	2 cut(s)	229, 810
RseI	CAYNNNNRTG	2 cut(s)	141, 675
SapI	GCTCTTC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	4 cut(s)	71, 201, 585, 901
Sau96I	GGNCC	1 cut(s)	726
ScaI	AGTACT	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	2 cut(s)	141, 675
Sse9I	AATT	4 cut(s)	127, 206, 315, 698
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	3 cut(s)	575, 710, 807
StyI	CCWWGG	3 cut(s)	268, 429, 720
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	305
TasI	AATT	4 cut(s)	127, 206, 315, 698
TatI	WGTACW	2 cut(s)	228, 809
TfiI	GAWTC	4 cut(s)	106, 459, 632, 760
TscAI	CASTG	1 cut(s)	628
TseI	GCWGC	1 cut(s)	261
TspRI	CASTG	1 cut(s)	628
XapI	RAATTY	1 cut(s)	698
XceI	RCATGY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	3 cut(s)	575, 710, 807
ZrmI	AGTACT	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.