Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003509

Physical Location & Seq

Genomic Coordinates Forward (+)

12741331 .. 12746253

Gene Structure 4923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGTAAGTTGGCTGAAATGAAGCTAAATCTTAGTCTTTTAAATTGCAGAATGAGTATATCAGCTGAAGTAGTTGAACCTACGGGTGAGGTTATTCTTTGGGAAGTAGTGCCTGTATCATTGGAGCAAAGGAGATCTGATCACTTGACAGAAAGGAAAAAGGCTTTACGAGCCCGTTATGTATATGGCATAATCTTCTTAATAACAAATCTTTGTGCTTGGTTTGTTCGTGATTATGGGCAAAGGGTGTTACCTGAGCTCCACTATTTGAAATCTTGTGGACATGGTGGAAGTGATTGTTTTCATACACAAGGAGTTCTCCGTATATTTTTCCTTCTAATGTTCCTGACAACATGTAAAACAAGAAAACTATATAAAGCTCGCAATGCATGGCATTCTGGGTGGTGGGGATCAAAGCTGTTTGCATGGCTTGTATCAATGATGATTCCGCTCTTCTGCCCTTCCAATTACATTCATTTATATGGTGAACTTGCTCGTGTTGGTGCAGGGATTTTTCTCGTTCTCCAGCTTATAAGTGTGATCCAGTTTATTAGATGGTGGAATAAGTACTGGATGCCCGATGAGCAAAAGAAGCAGAGCTGCTCCCTTGGCTTGTTCATGTCTACATTGTTTTACATCGCGTCGATGTGTGGAATTGCAGTTATGTATTCATCATATGCGATGAAATCATCATGTGCTCTCAACATCTTTTTCATCATATGGACTGCAGTTCTACTTATCGTAATGATGTCTGTGTCCCTACATTCCAAGGTAAACAGAGGTCTTTTATCTTCTGGAATCATGGCTTCATACATTGTTTTCCTATGTTGGTCTGCTATCAGAAGTGAACCTGCCAATGAGGAATGCAACCCACAAAGACAAGGGAATGCAAATGGTGATTGGACTACCATACTATTTCGGCATAATGAAGTTCAACATGAAGATGACATCCCTTACAAATATGGATTCTTCCACCTAGTATTTTCCTTGGGGGCCATGTATTTTGCAATGCTATTCATCAGTTGGAACCTCAATAACTCAGCTAAGAAGTGGAGCATTGATGTTGGCTGGGCTAGTACATGGGTGAAGATTGTCAATGAGTGGTTTGCAGCCTCAATATATATATGGACATTGTTTTCCCCAGTTCTGAGGCAGTCCAAAGTTATGGATCATGAAGAACCTGTTCAGGAGATTGACAGCTCAGATGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Serinc

Protein Analysis

404

Amino Acids

46.68

Weight (kDa)

8.74

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	53 - 297	2.4e-47	Serine incorporator (Serinc)
Serinc	PF03348	311 - 384	2.6e-17	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205
fragaria_vesca	FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470
malus_domestica	MD13G1230200.v1.1
prunus_persica	Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396601 RchiOBHm_Chr4g0421091
rosa_laevigata	RLG00000009517
rosa_multiflora	Rmu_sc0006586.1_g000024 Rmu_sc0010969.1_g000002
rosa_roxburghii	Rroxscaffold_5G00341460
rosa_rugosa	Rorug03G0348500
rosa_samantha	Rh2CG182400 Rh4AG070700 Rh4BG068600 Rh4CG076400 Rh4DG065700
rosa_wichuraiana	Rw4G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	859
AccBSI	CCGCTC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	623
AccII	CGCG	1 cut(s)	641
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	3 cut(s)	418, 535, 1176
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	569, 1078
AflIII	ACRYGT	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	77, 271, 935
AluBI	AGCT	9 cut(s)	25, 65, 259, 380, 418, 529, 600, 1043, 1200
AluI	AGCT	9 cut(s)	25, 65, 259, 380, 418, 529, 600, 1043, 1200
Alw21I	GWGCWC	2 cut(s)	261, 700
AlwI	GGATC	3 cut(s)	418, 535, 1176
AoxI	GGCC	1 cut(s)	993
ApeKI	GCWGC	2 cut(s)	600, 1109
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspS9I	GGNCC	1 cut(s)	993
AsuHPI	GGTGA	4 cut(s)	98, 497, 908, 1096
BanII	GRGCYC	2 cut(s)	175, 261
BauI	CACGAG	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	261, 700
BbvI	GCAGC	2 cut(s)	587, 1121
BccI	CCATC	1 cut(s)	549
BclI	TGATCA	1 cut(s)	139
BfaI	CTAG	2 cut(s)	977, 1074
BfmI	CTRYAG	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	859
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	2 cut(s)	601, 1110
BlsI	GCNGC	2 cut(s)	602, 1111
BmcAI	AGTACT	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	993
BmiI	GGNNCC	2 cut(s)	994, 1028
BmrI	ACTGGG	1 cut(s)	1136
BmsI	GCATC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	1136
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	607, 768, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bse1I	ACTGG	3 cut(s)	544, 575, 1142
Bse3DI	GCAATG	2 cut(s)	391, 1014
BseDI	CCNNGG	3 cut(s)	607, 768, 987
BseGI	GGATG	2 cut(s)	579, 948
BseMI	GCAATG	2 cut(s)	391, 1014
BseMII	CTCAG	4 cut(s)	246, 1053, 1139, 1215
BseNI	ACTGG	3 cut(s)	544, 575, 1142
BseXI	GCAGC	2 cut(s)	587, 1121
BseYI	CCCAGC	1 cut(s)	1068
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	1 cut(s)	995
BsiHKAI	GWGCWC	2 cut(s)	261, 700
BslFI	GGGAC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	742
BsmI	GAATGC	3 cut(s)	394, 869, 892
BsnI	GGCC	1 cut(s)	995
Bsp1286I	GDGCHC	3 cut(s)	175, 261, 700
Bsp143I	GATC	5 cut(s)	134, 139, 410, 540, 1168
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	995
BspCNI	CTCAG	4 cut(s)	247, 1052, 1140, 1214
BspFNI	CGCG	1 cut(s)	641
BspHI	TCATGA	1 cut(s)	1171
BspLI	GGNNCC	2 cut(s)	994, 1028
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	3 cut(s)	418, 535, 1176
BspQI	GCTCTTC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	451
BsrDI	GCAATG	2 cut(s)	391, 1014
BsrI	ACTGG	3 cut(s)	544, 575, 1142
BssECI	CCNNGG	3 cut(s)	607, 768, 987
BssMI	GATC	5 cut(s)	134, 139, 410, 540, 1168
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	3 cut(s)	607, 768, 987
Bst2BI	CACGAG	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	6 cut(s)	32, 255, 1039, 1044, 1148, 1201
BstF5I	GGATG	2 cut(s)	579, 948
BstFNI	CGCG	1 cut(s)	641
BstKTI	GATC	5 cut(s)	137, 142, 413, 543, 1171
BstMBI	GATC	5 cut(s)	134, 139, 410, 540, 1168
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 386, 583, 592, 609
BstNSI	RCATGY	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	2 cut(s)	587, 1121
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	995
BtgZI	GCGATG	2 cut(s)	622, 695
BtsCI	GGATG	2 cut(s)	579, 948
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	1 cut(s)	382
CciI	TCATGA	1 cut(s)	1171
Cfr13I	GGNCC	1 cut(s)	993
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	568, 1077
CviQI	GTAC	2 cut(s)	568, 1077
DdeI	CTNAG	6 cut(s)	32, 255, 1039, 1044, 1148, 1201
DpnI	GATC	5 cut(s)	136, 141, 412, 542, 1170
DpnII	GATC	5 cut(s)	134, 139, 410, 540, 1168
DraI	TTTAAA	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	607, 768, 987
Eco24I	GRGCYC	2 cut(s)	175, 261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	259
EcoT14I	CCWWGG	3 cut(s)	607, 768, 987
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	2 cut(s)	175, 261
ErhI	CCWWGG	3 cut(s)	607, 768, 987
FaqI	GGGAC	1 cut(s)	742
FauNDI	CATATG	2 cut(s)	676, 719
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	2 cut(s)	601, 1110
FokI	GGATG	2 cut(s)	586, 935
FriOI	GRGCYC	2 cut(s)	175, 261
Fsp4HI	GCNGC	2 cut(s)	601, 1110
FspBI	CTAG	2 cut(s)	977, 1074
GluI	GCNGC	2 cut(s)	601, 1110
GsaI	CCCAGC	1 cut(s)	1072
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	995
HgaI	GACGC	1 cut(s)	630
HinfI	GANTC	3 cut(s)	445, 798, 966
HphI	GGTGA	4 cut(s)	98, 497, 908, 1096
Hpy166II	GTNNAC	5 cut(s)	281, 488, 624, 775, 848
Hpy188I	TCNGA	4 cut(s)	139, 842, 1149, 1204
Hpy188III	TCNNGA	5 cut(s)	230, 346, 795, 1172, 1187
Hpy8I	GTNNAC	5 cut(s)	281, 488, 624, 775, 848
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	2 cut(s)	344, 471
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 386, 583, 592, 609
HpyF3I	CTNAG	6 cut(s)	32, 255, 1039, 1044, 1148, 1201
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	134, 139, 410, 540, 1168
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	4 cut(s)	124, 264, 608, 1053
Lsp1109I	GCAGC	2 cut(s)	587, 1121
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	2 cut(s)	977, 1074
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	5 cut(s)	136, 141, 412, 542, 1170
MbiI	CCGCTC	1 cut(s)	451
MboI	GATC	5 cut(s)	134, 139, 410, 540, 1168
MboII	GAAGA	7 cut(s)	187, 445, 783, 953, 961, 1099, 1187
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	3 cut(s)	175, 261, 700
MluCI	AATT	3 cut(s)	43, 466, 654
MmeI	TCCRAC	1 cut(s)	1004
MnlI	CCTC	6 cut(s)	82, 773, 853, 1040, 1123, 1143
Mph1103I	ATGCAT	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	1182
MseI	TTAA	2 cut(s)	41, 200
MslI	CAYNNNNRTG	2 cut(s)	480, 942
MspA1I	CMGCKG	1 cut(s)	65
Mva1269I	GAATGC	3 cut(s)	394, 869, 892
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	5 cut(s)	170, 386, 583, 592, 609
NdeI	CATATG	2 cut(s)	676, 719
NdeII	GATC	5 cut(s)	134, 139, 410, 540, 1168
NlaIV	GGNNCC	2 cut(s)	994, 1028
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	357
PagI	TCATGA	1 cut(s)	1171
PciI	ACATGT	1 cut(s)	353
PciSI	GCTCTTC	1 cut(s)	458
PctI	GAATGC	3 cut(s)	394, 869, 892
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	3 cut(s)	445, 798, 966
PkrI	GCNGC	2 cut(s)	602, 1111
PscI	ACATGT	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	1068
PspN4I	GGNNCC	2 cut(s)	994, 1028
PspPI	GGNCC	1 cut(s)	993
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	569, 1078
RsaNI	GTAC	2 cut(s)	568, 1077
RseI	CAYNNNNRTG	2 cut(s)	480, 942
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	41, 200
SatI	GCNGC	2 cut(s)	601, 1110
Sau3AI	GATC	5 cut(s)	134, 139, 410, 540, 1168
Sau96I	GGNCC	1 cut(s)	993
ScaI	AGTACT	1 cut(s)	569
SduI	GDGCHC	3 cut(s)	175, 261, 700
SfaNI	GCATC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	2 cut(s)	480, 942
Sse9I	AATT	3 cut(s)	43, 466, 654
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	2 cut(s)	977, 1074
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	3 cut(s)	607, 768, 987
TaqI	TCGA	1 cut(s)	644
TasI	AATT	3 cut(s)	43, 466, 654
TatI	WGTACW	2 cut(s)	567, 1076
TfiI	GAWTC	3 cut(s)	445, 798, 966
Tru1I	TTAA	2 cut(s)	41, 200
Tru9I	TTAA	2 cut(s)	41, 200
TseI	GCWGC	2 cut(s)	600, 1109
TspGWI	ACGGA	1 cut(s)	311
XceI	RCATGY	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	2 cut(s)	977, 1074
ZrmI	AGTACT	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.