Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006586.1

Orthogroup ID

OG0003509

Physical Location & Seq

Genomic Coordinates Reverse (-)

81605 .. 84053

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006586.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgatgtctgtgtccctacattccaaggtaaacagaggtcttttatcttctggaatcatggcttcatacattgttttcctatgttggtctgctatcagaagtgaacctgccaatgaggaatgcaacccacaaagacaagggaatgcaaatggtgattggactaccatactaggcttcctgatcgcaatatgtgctattgttatggcaactttttccactggtattgattcacaatcatttcagtttcggcgtaatgaagttcaacatgaagatgacatcccttacaagtatggattcttccacctagtattttccttgggggccatgtattttgcaatgctattcatcagttggaacctcaataactcagctaagaagtggagcattgatgttggctgggctagtacatgggtgaagattgtcaatgagtggtttgcagcctcaatatatatatggacattgttttccccagttctgaggcagtccaaagttatggatcatgaagaacctgttcaggagattgacagctcagatgtgccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Serinc

Protein Analysis

180

Amino Acids

20.49

Weight (kDa)

5.27

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205 AT2G33205
fragaria_vesca	FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470 FvH4_4g05470
malus_domestica	MD13G1230200.v1.1
prunus_persica	Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1 Prupe.1G056600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396601 RchiOBHm_Chr4g0421091
rosa_laevigata	RLG00000009517
rosa_multiflora	Rmu_sc0006586.1_g000024 Rmu_sc0010969.1_g000002
rosa_roxburghii	Rroxscaffold_5G00341460
rosa_rugosa	Rorug03G0348500
rosa_samantha	Rh2CG182400 Rh4AG070700 Rh4BG068600 Rh4CG076400 Rh4DG065700
rosa_wichuraiana	Rw4G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	504
AfaI	GTAC	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	2 cut(s)	371, 528
AluI	AGCT	2 cut(s)	371, 528
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	164, 424
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbvI	GCAGC	1 cut(s)	449
BfaI	CTAG	3 cut(s)	170, 305, 402
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	322, 356
BmrI	ACTGGG	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	24, 315
Bse1I	ACTGG	2 cut(s)	223, 470
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	24, 315
BseGI	GGATG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	381, 467, 543
BseNI	ACTGG	2 cut(s)	223, 470
BseXI	GCAGC	1 cut(s)	449
BseYI	CCCAGC	1 cut(s)	396
BshFI	GGCC	1 cut(s)	323
BsmI	GAATGC	2 cut(s)	125, 148
BsnI	GGCC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	180, 496
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	3 cut(s)	380, 468, 542
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	322, 356
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	223, 470
BssECI	CCNNGG	2 cut(s)	24, 315
BssMI	GATC	2 cut(s)	180, 496
BssT1I	CCWWGG	2 cut(s)	24, 315
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstDEI	CTNAG	4 cut(s)	367, 372, 476, 529
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	2 cut(s)	183, 499
BstMBI	GATC	2 cut(s)	180, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	449
BstXI	CCANNNNNNTGG	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	405
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	6 cut(s)	58, 266, 325, 408, 500, 540
CviJI	RGCY	8 cut(s)	62, 174, 323, 371, 396, 401, 440, 528
CviKI_1	RGCY	8 cut(s)	62, 174, 323, 371, 396, 401, 440, 528
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	4 cut(s)	367, 372, 476, 529
DpnI	GATC	2 cut(s)	182, 498
DpnII	GATC	2 cut(s)	180, 496
Eco130I	CCWWGG	2 cut(s)	24, 315
EcoT14I	CCWWGG	2 cut(s)	24, 315
ErhI	CCWWGG	2 cut(s)	24, 315
FaeI	CATG	6 cut(s)	61, 269, 328, 411, 503, 543
FatI	CATG	6 cut(s)	57, 265, 324, 407, 499, 539
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	3 cut(s)	170, 305, 402
GluI	GCNGC	1 cut(s)	438
GsaI	CCCAGC	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	6 cut(s)	61, 269, 328, 411, 503, 543
HinfI	GANTC	3 cut(s)	54, 227, 294
HphI	GGTGA	2 cut(s)	164, 424
Hpy166II	GTNNAC	2 cut(s)	31, 104
Hpy188I	TCNGA	3 cut(s)	98, 477, 532
Hpy188III	TCNNGA	4 cut(s)	51, 178, 500, 515
Hpy8I	GTNNAC	2 cut(s)	31, 104
HpyCH4V	TGCA	4 cut(s)	123, 146, 335, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	367, 372, 476, 529
Hsp92II	CATG	6 cut(s)	61, 269, 328, 411, 503, 543
Kzo9I	GATC	2 cut(s)	180, 496
LmnI	GCTCC	1 cut(s)	381
LpnPI	CCDG	8 cut(s)	36, 120, 191, 204, 382, 483, 500, 522
Lsp1109I	GCAGC	1 cut(s)	449
MaeI	CTAG	3 cut(s)	170, 305, 402
MalI	GATC	2 cut(s)	182, 498
MboI	GATC	2 cut(s)	180, 496
MboII	GAAGA	5 cut(s)	39, 281, 289, 427, 515
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	5 cut(s)	29, 109, 368, 451, 471
MroXI	GAANNNNTTC	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	270
Mva1269I	GAATGC	2 cut(s)	125, 148
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	2 cut(s)	180, 496
NlaIII	CATG	6 cut(s)	61, 269, 328, 411, 503, 543
NlaIV	GGNNCC	2 cut(s)	322, 356
PagI	TCATGA	1 cut(s)	499
PctI	GAATGC	2 cut(s)	125, 148
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	54, 227, 294
PkrI	GCNGC	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	322, 356
PspPI	GGNCC	1 cut(s)	321
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	270
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	180, 496
Sau96I	GGNCC	1 cut(s)	321
SetI	ASST	8 cut(s)	30, 40, 109, 306, 360, 373, 511, 530
SmiMI	CAYNNNNRTG	1 cut(s)	270
SspMI	CTAG	3 cut(s)	170, 305, 402
StyI	CCWWGG	2 cut(s)	24, 315
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	3 cut(s)	54, 227, 294
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	5 cut(s)	54, 270, 282, 334, 516
TspRI	CASTG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	3 cut(s)	170, 305, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.