Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009333

Physical Location & Seq

Genomic Coordinates Forward (+)

14173579 .. 14174656

Gene Structure 1078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACGACAATGGCGACACAAGGCGCTTGGCTACGAATGACCTCATCAGCCAAGTCCATGACCAAGTCAACCGTGACTTCAAAGGAGCTTGGATTCCTCACCTCCCAGCTCAGCGGCTTAAGAATCTCATATACTCCCAGTGACGTCATCAACCGTATCTCCCTTCCTTCGTTCCCCGGGATTCAGCCAATCGTCGCACGTAGAATCTGCCCTTTTACTGGGAAGAAAGCAAACAGAGCAAACAAAGTTTCATTCTCTAACCACAAGACCAAGAAGTTGCAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCTGGCAAACGTTTTGTCAAACTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAGAACGGACTCGACGCTGTTGCCAAGAAAGCCGGCATTGATCTTCGCAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28

Protein Analysis

143

Amino Acids

16.03

Weight (kDa)

11.18

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28	PF00830	68 - 127	2.1e-20	Ribosomal L28 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33450
fragaria_vesca	FvH4_4g04200
malus_domestica	MD13G1218400.v1.1 MD16G1223800.v1.1
prunus_persica	Prupe.1G045100_v2.0.a1
pyrus_communis	pycom13g19330 pycom16g18730
rosa_chinensis	RchiOBHm_Chr4g0394651 RchiOBHm_Chr4g0394691
rosa_laevigata	RLG00000009674
rosa_multiflora	Rmu_sc0005424.1_g000003 Rmu_sc0011148.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339690
rosa_rugosa	Rorug03G0362600.1 Rorug03G0362700.1 Rorug03G0363200.1
rosa_samantha	Rh4AG053900 Rh4AG054200 Rh4BG051900 Rh4CG058700 Rh4DG050400
rosa_wichuraiana	Rw4G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AciI	CCGC	1 cut(s)	114
AclI	AACGTT	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	81, 364
AluBI	AGCT	3 cut(s)	88, 109, 320
AluI	AGCT	3 cut(s)	88, 109, 320
Ama87I	CYCGRG	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AspLEI	GCGC	1 cut(s)	26
AsuC2I	CCSGG	2 cut(s)	177, 178
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BcnI	CCSGG	2 cut(s)	177, 178
BfoI	RGCGCY	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	177, 178
BmeT110I	CYCGRG	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	177, 178
BmrI	ACTGGG	2 cut(s)	132, 228
BmuI	ACTGGG	2 cut(s)	132, 228
BpiI	GAAGAC	1 cut(s)	371
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	177, 178
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	175, 176
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	138, 223
BseDI	CCNNGG	2 cut(s)	175, 176
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	2 cut(s)	138, 223
BseYI	CCCAGC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	177, 408
BslI	CCNNNNNNNGG	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	415
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	138, 223
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	175, 176
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	73, 155
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	322, 409
BstDEI	CTNAG	2 cut(s)	110, 354
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 404
BstSCI	CCNGG	2 cut(s)	175, 176
BstV2I	GAAGAC	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	322, 409
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	407
Cfr9I	CCCGGG	1 cut(s)	176
CseI	GACGC	1 cut(s)	398
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	9 cut(s)	31, 50, 88, 109, 117, 187, 320, 359, 407
CviKI_1	RGCY	9 cut(s)	31, 50, 88, 109, 117, 187, 320, 359, 407
DdeI	CTNAG	2 cut(s)	110, 354
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	176
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 130, 132
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	115
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	115
GsaI	CCCAGC	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	27
HapII	CCGG	2 cut(s)	177, 408
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	2 cut(s)	69, 289
HindII	GTYRAC	2 cut(s)	69, 289
HinfI	GANTC	5 cut(s)	93, 123, 181, 204, 384
HpaII	CCGG	2 cut(s)	177, 408
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	69, 289
Hpy8I	GTNNAC	2 cut(s)	69, 289
Hpy99I	CGWCG	2 cut(s)	197, 392
HpyAV	CCTTC	2 cut(s)	173, 177
HpyCH4III	ACNGT	2 cut(s)	73, 155
HpyCH4IV	ACGT	3 cut(s)	144, 199, 328
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 404
HpyF3I	CTNAG	2 cut(s)	110, 354
HpySE526I	ACGT	3 cut(s)	144, 199, 328
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	24
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	6 cut(s)	119, 151, 190, 204, 306, 421
MaeII	ACGT	3 cut(s)	144, 199, 328
MaeIII	GTNAC	2 cut(s)	73, 140
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	4 cut(s)	235, 376, 388, 410
MluCI	AATT	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	52, 107, 112
MroNI	GCCGGC	1 cut(s)	407
MseI	TTAA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	114
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	2 cut(s)	177, 408
MspR9I	CCNGG	2 cut(s)	177, 178
MwoI	GCNNNNNNNGC	2 cut(s)	236, 404
NaeI	GCCGGC	1 cut(s)	409
NciI	CCSGG	2 cut(s)	177, 178
NdeII	GATC	1 cut(s)	415
NgoMIV	GCCGGC	1 cut(s)	407
NlaIII	CATG	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	73, 140
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	93, 123, 181, 204
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
Ppu21I	YACGTR	1 cut(s)	200
Psp1406I	AACGTT	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	105
PsyI	GACNNNGTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	177, 178
SetI	ASST	8 cut(s)	44, 90, 104, 111, 147, 202, 322, 331
SmaI	CCCGGG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	281
SsiI	CCGC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	175, 176
TaaI	ACNGT	2 cut(s)	73, 155
TaiI	ACGT	3 cut(s)	147, 202, 331
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	281
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	93, 123, 181, 204
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	2 cut(s)	73, 140
Tsp45I	GTSAC	2 cut(s)	73, 140
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	396
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	118
XmaI	CCCGGG	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.