Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009333

Physical Location & Seq

Genomic Coordinates Reverse (-)

15446882 .. 15447917

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAGCAGCATCGGCAACGACCGCCGTGTTCTTCGGCACCACCCGAACTCCGTGCTTCCGCAGGGCCGACGCTTCCAAGCGATTCCCGCACCCTTTCAAGGCGGAGGCAGTTTCCGACGTCGGGTTCGTTACCAGTCAGCTGAGCGGCGTCAGAATCTCCTACGACATGTCGTCTCAGCTTCCCAGTATCTCCACTCCTTCCCTCCCCGCCCTTCAGCCCATCGTTGCCCGTAGAATTTGTCCTTTCACAGGGAAGAAAGCAAACAGGGCAAACAAGATTTCCTTCTCAGCCCACAAGACCAAGAAGTTGCAGTTTGTGAACCTACAGTACAAGAGGGTTTGGTGGGAAGCTGGGAAGCGCTTTCTTAAACTGCGTTTGTCGACTAAAGCATTGAAGACCATTGAGAAGAACGGGATTGATGCCGTTGCCAAGAAGGCCGGGATTGATCTTCGCAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28

Protein Analysis

155

Amino Acids

17.06

Weight (kDa)

10.94

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33450
fragaria_vesca	FvH4_4g04200
malus_domestica	MD13G1218400.v1.1 MD16G1223800.v1.1
prunus_persica	Prupe.1G045100_v2.0.a1
pyrus_communis	pycom13g19330 pycom16g18730
rosa_chinensis	RchiOBHm_Chr4g0394651 RchiOBHm_Chr4g0394691
rosa_laevigata	RLG00000009674
rosa_multiflora	Rmu_sc0005424.1_g000003 Rmu_sc0011148.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339690
rosa_rugosa	Rorug03G0362600.1 Rorug03G0362700.1 Rorug03G0363200.1
rosa_samantha	Rh4AG053900 Rh4AG054200 Rh4BG051900 Rh4CG058700 Rh4DG050400
rosa_wichuraiana	Rw4G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	6 cut(s)	24, 61, 89, 104, 147, 210
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	2 cut(s)	120, 150
AfaI	GTAC	1 cut(s)	332
AfeI	AGCGCT	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	100, 123, 251
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	100, 397
AhdI	GACNNNNNGTC	1 cut(s)	172
AluBI	AGCT	3 cut(s)	142, 181, 353
AluI	AGCT	3 cut(s)	142, 181, 353
Alw26I	GTCTC	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	362
AoxI	GGCC	2 cut(s)	66, 438
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	237
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	17, 20
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	11, 410
BcgI	CGANNNNNNTGC	3 cut(s)	28, 36, 70
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	3 cut(s)	6, 9, 148
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	3 cut(s)	7, 10, 149
Bme1390I	CCNGG	1 cut(s)	442
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	20, 412
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	442
BsaHI	GRCGYC	2 cut(s)	120, 150
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 123, 251
Bse1I	ACTGG	2 cut(s)	135, 186
BseLI	CCNNNNNNNGG	3 cut(s)	100, 123, 251
BseMII	CTCAG	3 cut(s)	134, 191, 303
BseNI	ACTGG	2 cut(s)	135, 186
BseXI	GCAGC	2 cut(s)	17, 20
BseYI	CCCAGC	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	68, 440
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	100, 123, 251
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	68, 440
Bsp143I	GATC	1 cut(s)	448
Bsp1720I	GCTNAGC	1 cut(s)	143
BspACI	CCGC	6 cut(s)	24, 61, 89, 104, 147, 210
BspANI	GGCC	2 cut(s)	68, 440
BspCNI	CTCAG	3 cut(s)	135, 190, 302
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	135, 186
BssMI	GATC	1 cut(s)	448
BssNI	GRCGYC	2 cut(s)	120, 150
Bst4CI	ACNGT	1 cut(s)	330
BstACI	GRCGYC	2 cut(s)	120, 150
BstDEI	CTNAG	3 cut(s)	143, 177, 289
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	448
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 23, 88, 269, 437
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	17, 20
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	68, 440
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	2 cut(s)	80, 139
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	7 cut(s)	68, 142, 181, 220, 293, 353, 440
CviKI_1	RGCY	7 cut(s)	68, 142, 181, 220, 293, 353, 440
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	143, 177, 289
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DriI	GACNNNNNGTC	1 cut(s)	172
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 463
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	1 cut(s)	168
FauI	CCCGC	2 cut(s)	96, 217
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	6, 9, 148
Fsp4HI	GCNGC	3 cut(s)	6, 9, 148
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	3 cut(s)	6, 9, 148
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	2 cut(s)	68, 440
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	2 cut(s)	80, 139
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	2 cut(s)	120, 150
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	2 cut(s)	84, 156
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	2 cut(s)	322, 384
Hpy188I	TCNGA	2 cut(s)	118, 155
Hpy8I	GTNNAC	2 cut(s)	322, 384
Hpy99I	CGWCG	3 cut(s)	74, 122, 125
HpyAV	CCTTC	4 cut(s)	210, 224, 295, 430
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 23, 88, 269, 437
HpyF3I	CTNAG	3 cut(s)	143, 177, 289
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	120, 150
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	49, 148, 199, 237, 253, 339, 454
Lsp1109I	GCAGC	2 cut(s)	17, 20
LweI	GCATC	2 cut(s)	20, 412
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	450
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	1 cut(s)	448
MboII	GAAGA	5 cut(s)	25, 268, 409, 421, 443
MluCI	AATT	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	100, 215, 330
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	5 cut(s)	14, 23, 88, 269, 437
NciI	CCSGG	1 cut(s)	442
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	172
PciI	ACATGT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	84, 156
PkrI	GCNGC	3 cut(s)	7, 10, 149
PscI	ACATGT	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	66
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SalI	GTCGAC	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	6, 9, 148
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	442
SetI	ASST	5 cut(s)	123, 144, 183, 327, 355
SfaNI	GCATC	2 cut(s)	20, 412
SfcI	CTRYAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	6 cut(s)	24, 61, 89, 104, 147, 210
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	383
TasI	AATT	1 cut(s)	237
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	84, 156
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	2 cut(s)	5, 8
TspGWI	ACGGA	1 cut(s)	42
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	383
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.