Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005424.1

Orthogroup ID

OG0009333

Physical Location & Seq

Genomic Coordinates Reverse (-)

18505 .. 19290

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005424.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcagcttccgcaaccgcggctgtgttctccggtctatgcttccgccgaggagcagagtcctacaagaggttgtcttccaagacccgagcagtttccgatattgggttcgtcaccagtcagctcagtggcctcaaaatctcctacgacgtgtcgtctcagctcccaactcccatcttcaccccttccctccctggccttcagcccattgttgctcgtagaatttgtccttttactgggaagaaagcaaacaaggcaaacaagatttccttctcggcccacaagaccaagaagttgcagtttgtgaacctgcagtacaagaggatttggtgggaaggtgggaagcgctttttgaagctgcgcttgtcaaccaaagcaatcaagaccatagagaagaatggactggaagccgttgccaagaaggccgggatagatcttcgtaagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28

Protein Analysis

149

Amino Acids

16.44

Weight (kDa)

10.61

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33450
fragaria_vesca	FvH4_4g04200
malus_domestica	MD13G1218400.v1.1 MD16G1223800.v1.1
prunus_persica	Prupe.1G045100_v2.0.a1
pyrus_communis	pycom13g19330 pycom16g18730
rosa_chinensis	RchiOBHm_Chr4g0394651 RchiOBHm_Chr4g0394691
rosa_laevigata	RLG00000009674
rosa_multiflora	Rmu_sc0005424.1_g000003 Rmu_sc0011148.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339690
rosa_rugosa	Rorug03G0362600.1 Rorug03G0362700.1 Rorug03G0363200.1
rosa_samantha	Rh4AG053900 Rh4AG054200 Rh4BG051900 Rh4CG058700 Rh4DG050400
rosa_wichuraiana	Rw4G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	318
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	12, 18, 20, 46
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	317
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	69, 105, 236
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	355
AhdI	GACNNNNNGTC	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	4 cut(s)	8, 124, 163, 358
AluI	AGCT	4 cut(s)	8, 124, 163, 358
Alw26I	GTCTC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	87
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	4 cut(s)	130, 196, 276, 423
ApeKI	GCWGC	2 cut(s)	5, 358
ApoI	RAATTY	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	348, 363
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	106, 172
AvaI	CYCGRG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	17, 345
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	6, 21, 359
BlsI	GCNGC	3 cut(s)	7, 22, 360
Bme1390I	CCNGG	2 cut(s)	195, 427
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	195, 427
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	427
BsaJI	CCNNGG	3 cut(s)	18, 49, 193
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 105, 236
Bse1I	ACTGG	3 cut(s)	117, 241, 408
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	18, 49, 193
BseLI	CCNNNNNNNGG	3 cut(s)	69, 105, 236
BseMII	CTCAG	2 cut(s)	139, 173
BseNI	ACTGG	3 cut(s)	117, 241, 408
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	17, 345
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	4 cut(s)	132, 198, 278, 425
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	33, 426
BslI	CCNNNNNNNGG	3 cut(s)	69, 105, 236
BsmAI	GTCTC	1 cut(s)	162
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	4 cut(s)	132, 198, 278, 425
BsoBI	CYCGRG	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	4 cut(s)	12, 18, 20, 46
BspANI	GGCC	4 cut(s)	132, 198, 278, 425
BspCNI	CTCAG	2 cut(s)	138, 172
BspFNI	CGCG	1 cut(s)	20
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	117, 241, 408
BssECI	CCNNGG	3 cut(s)	18, 49, 193
BssMI	GATC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	125, 159
BstDSI	CCRYGG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	348, 363
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 254, 422
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	193, 425
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	17, 345
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	4 cut(s)	132, 198, 278, 425
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	318
CfoI	GCGC	2 cut(s)	348, 363
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	316
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	125, 159
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DriI	GACNNNNNGTC	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	35
Eco47III	AGCGCT	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	162
FaiI	YATR	2 cut(s)	40, 389
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 347, 379
Fnu4HI	GCNGC	3 cut(s)	6, 21, 359
Fsp4HI	GCNGC	3 cut(s)	6, 21, 359
GlaI	GCGC	2 cut(s)	347, 362
GluI	GCNGC	3 cut(s)	6, 21, 359
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	4 cut(s)	132, 198, 278, 425
HapII	CCGG	2 cut(s)	33, 426
HhaI	GCGC	2 cut(s)	348, 363
Hin6I	GCGC	2 cut(s)	346, 361
HinP1I	GCGC	2 cut(s)	346, 361
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	2 cut(s)	33, 426
HphI	GGTGA	2 cut(s)	106, 172
Hpy166II	GTNNAC	2 cut(s)	307, 369
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	2 cut(s)	307, 369
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	195, 209, 280, 329, 415
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	298, 313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 254, 422
HpyF3I	CTNAG	2 cut(s)	125, 159
HpySE526I	ACGT	1 cut(s)	150
HspAI	GCGC	2 cut(s)	346, 361
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	53, 168
LpnPI	CCDG	8 cut(s)	46, 130, 180, 207, 222, 323, 389, 439
Lsp1109I	GCAGC	2 cut(s)	17, 345
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	5 cut(s)	69, 169, 253, 406, 428
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	5 cut(s)	44, 63, 143, 200, 315
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	33, 426
MspR9I	CCNGG	2 cut(s)	195, 427
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 254, 422
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	1 cut(s)	433
NmeAIII	GCCGAG	2 cut(s)	74, 254
NmuCI	GTSAC	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	7, 22, 360
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	277
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacII	CCGCGG	1 cut(s)	21
SatI	GCNGC	3 cut(s)	6, 21, 359
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	195, 427
SetI	ASST	8 cut(s)	10, 74, 126, 153, 165, 312, 340, 360
SfcI	CTRYAG	1 cut(s)	311
Sfr303I	CCGCGG	1 cut(s)	21
SgrBI	CCGCGG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	4 cut(s)	12, 18, 20, 46
StyD4I	CCNGG	2 cut(s)	193, 425
TaiI	ACGT	1 cut(s)	153
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	5, 358
Tsp45I	GTSAC	1 cut(s)	112
TspRI	CASTG	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.