Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011148.1

Orthogroup ID

OG0009333

Physical Location & Seq

Genomic Coordinates Forward (+)

11183 .. 11836

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011148.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcagcttccgcaaccgcggctgtgttctccggtctatgcttccgccgaggagcagagtcctccaagagattgtcttccaagacccgagcagtttccgatattgggttcgtcaccagtcagctcagtggcctcaaaatctcctacgacgtgtcgtctcagctcccaactcccatcttcaccccttccctccctggccttcagcccattgttgctcgtagaatttgtccttttactgggaagaaagcaaacaaggcaaacaagatttccttctcggcccacaagaccaagaagttgcagtttgtgaacctgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28

Protein Analysis

105

Amino Acids

11.26

Weight (kDa)

10.85

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33450
fragaria_vesca	FvH4_4g04200
malus_domestica	MD13G1218400.v1.1 MD16G1223800.v1.1
prunus_persica	Prupe.1G045100_v2.0.a1
pyrus_communis	pycom13g19330 pycom16g18730
rosa_chinensis	RchiOBHm_Chr4g0394651 RchiOBHm_Chr4g0394691
rosa_laevigata	RLG00000009674
rosa_multiflora	Rmu_sc0005424.1_g000003 Rmu_sc0011148.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339690
rosa_rugosa	Rorug03G0362600.1 Rorug03G0362700.1 Rorug03G0363200.1
rosa_samantha	Rh4AG053900 Rh4AG054200 Rh4BG051900 Rh4CG058700 Rh4DG050400
rosa_wichuraiana	Rw4G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	12, 18, 20, 46
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	105, 236
AflIII	ACRYGT	1 cut(s)	150
AhdI	GACNNNNNGTC	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	8, 124, 163
AluI	AGCT	3 cut(s)	8, 124, 163
Alw26I	GTCTC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	3 cut(s)	130, 196, 276
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	106, 172
AvaI	CYCGRG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	6, 21
BlsI	GCNGC	2 cut(s)	7, 22
Bme1390I	CCNGG	1 cut(s)	195
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	18, 49, 193
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 236
Bse1I	ACTGG	2 cut(s)	117, 241
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	18, 49, 193
BseLI	CCNNNNNNNGG	2 cut(s)	105, 236
BseMII	CTCAG	2 cut(s)	139, 173
BseNI	ACTGG	2 cut(s)	117, 241
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	3 cut(s)	132, 198, 278
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	105, 236
BsmAI	GTCTC	1 cut(s)	162
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	132, 198, 278
BsoBI	CYCGRG	1 cut(s)	87
BspACI	CCGC	4 cut(s)	12, 18, 20, 46
BspANI	GGCC	3 cut(s)	132, 198, 278
BspCNI	CTCAG	2 cut(s)	138, 172
BspFNI	CGCG	1 cut(s)	20
BspMAI	CTGCAG	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	117, 241
BssECI	CCNNGG	3 cut(s)	18, 49, 193
Bst2UI	CCWGG	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	125, 159
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 254
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	132, 198, 278
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	21
CviJI	RGCY	8 cut(s)	8, 23, 124, 132, 163, 198, 205, 278
CviKI_1	RGCY	8 cut(s)	8, 23, 124, 132, 163, 198, 205, 278
DdeI	CTNAG	2 cut(s)	125, 159
DriI	GACNNNNNGTC	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	162
FaiI	YATR	1 cut(s)	40
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
Fnu4HI	GCNGC	2 cut(s)	6, 21
Fsp4HI	GCNGC	2 cut(s)	6, 21
GluI	GCNGC	2 cut(s)	6, 21
HaeIII	GGCC	3 cut(s)	132, 198, 278
HapII	CCGG	1 cut(s)	33
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	106, 172
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	195, 209, 280
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	298, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 254
HpyF3I	CTNAG	2 cut(s)	125, 159
HpySE526I	ACGT	1 cut(s)	150
KspI	CCGCGG	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	53, 168
LpnPI	CCDG	5 cut(s)	46, 130, 180, 207, 222
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	69, 169, 253
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	44, 73, 143, 200
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 254
NmeAIII	GCCGAG	2 cut(s)	74, 254
NmuCI	GTSAC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	7, 22
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	315
SacII	CCGCGG	1 cut(s)	21
SatI	GCNGC	2 cut(s)	6, 21
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	5 cut(s)	10, 126, 153, 165, 312
SfcI	CTRYAG	1 cut(s)	311
Sfr303I	CCGCGG	1 cut(s)	21
SgrBI	CCGCGG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	4 cut(s)	12, 18, 20, 46
StyD4I	CCNGG	1 cut(s)	193
TaiI	ACGT	1 cut(s)	153
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	112
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.