Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009333

Physical Location & Seq

Genomic Coordinates Reverse (-)

3222304 .. 3223645

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAGCATCGGCAACAGCTGGAGTGTTTTTCGCTAACACCCGAAGTCTATGCTTTCGCAAAGCAGAGTCTTCCAAGAGATTGCTGCAGCCTTTTAAGGCCGAAGCAGTTTCGGATATTGGGTTCGTTACCAGTCAGCTGGGTGGCATCAAAATCTCTTACGACATGTCGTCTCAGCTGCCCAAGTCCATCTCCATTTTTTCCCCACCTGCCCTTCAGCCCATTGTTGCCCGTAGAATTTGTCCTTTCACTGGGAAGAAATCAAACAGGGCAAACAAGATTTCCTTCTCAGCTCACAAGACCAAAAAGTTGCAGTTTGTGAACCTACAATACAAGAGAGTTTGGTGGGAAGCTGGGAAGCGCTTTCTTAAACTGCGTTTGTCAACTAAAGCATTGAAAACCATAGAGAAAAACGGAATTGATGCCGTTGCCAAGAAGGCTGGGATAGATCTTCGCAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28

Protein Analysis

155

Amino Acids

17.11

Weight (kDa)

10.73

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33450
fragaria_vesca	FvH4_4g04200
malus_domestica	MD13G1218400.v1.1 MD16G1223800.v1.1
prunus_persica	Prupe.1G045100_v2.0.a1
pyrus_communis	pycom13g19330 pycom16g18730
rosa_chinensis	RchiOBHm_Chr4g0394651 RchiOBHm_Chr4g0394691
rosa_laevigata	RLG00000009674
rosa_multiflora	Rmu_sc0005424.1_g000003 Rmu_sc0011148.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339690
rosa_rugosa	Rorug03G0362600.1 Rorug03G0362700.1 Rorug03G0363200.1
rosa_samantha	Rh4AG053900 Rh4AG054200 Rh4BG051900 Rh4CG058700 Rh4DG050400
rosa_wichuraiana	Rw4G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	397
AhdI	GACNNNNNGTC	1 cut(s)	169
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	5 cut(s)	20, 139, 178, 293, 353
AluI	AGCT	5 cut(s)	20, 139, 178, 293, 353
Alw26I	GTCTC	1 cut(s)	177
Aor51HI	AGCGCT	1 cut(s)	362
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	4 cut(s)	5, 85, 88, 178
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	17, 72, 100, 165
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	410
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BcoDI	GTCTC	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	4 cut(s)	6, 86, 89, 179
BlsI	GCNGC	4 cut(s)	7, 87, 90, 180
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	3 cut(s)	17, 156, 412
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	132, 256
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	188, 303
BseNI	ACTGG	2 cut(s)	132, 256
BseXI	GCAGC	4 cut(s)	17, 72, 100, 165
BseYI	CCCAGC	3 cut(s)	139, 353, 440
BshFI	GGCC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	448
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	187, 302
BspMAI	CTGCAG	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	132, 256
BssMI	GATC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	174, 289
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 437
BstNSI	RCATGY	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	4 cut(s)	17, 72, 100, 165
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	363
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	9 cut(s)	20, 91, 101, 139, 178, 220, 293, 353, 440
CviKI_1	RGCY	9 cut(s)	20, 91, 101, 139, 178, 220, 293, 353, 440
DdeI	CTNAG	2 cut(s)	174, 289
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	169
FaiI	YATR	4 cut(s)	52, 167, 404, 463
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	6, 86, 89, 179
Fsp4HI	GCNGC	4 cut(s)	6, 86, 89, 179
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	4 cut(s)	6, 86, 89, 179
GsaI	CCCAGC	3 cut(s)	143, 357, 444
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	322, 384
Hpy188I	TCNGA	1 cut(s)	115
Hpy8I	GTNNAC	2 cut(s)	322, 384
HpyAV	CCTTC	3 cut(s)	224, 295, 430
HpyCH4V	TGCA	2 cut(s)	88, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 437
HpyF3I	CTNAG	2 cut(s)	174, 289
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	8 cut(s)	6, 125, 145, 222, 237, 253, 339, 426
Lsp1109I	GCAGC	4 cut(s)	17, 72, 100, 165
LweI	GCATC	3 cut(s)	17, 156, 412
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	3 cut(s)	63, 268, 443
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	2 cut(s)	237, 417
MlyI	GAGTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	96, 369
MspA1I	CMGCKG	3 cut(s)	20, 139, 178
MwoI	GCNNNNNNNGC	2 cut(s)	11, 437
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	169
NspI	RCATGY	1 cut(s)	169
PaqCI	CACCTGC	1 cut(s)	217
PciI	ACATGT	1 cut(s)	165
PkrI	GCNGC	4 cut(s)	7, 87, 90, 180
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	165
PspFI	CCCAGC	3 cut(s)	139, 353, 440
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	448
PvuII	CAGCTG	3 cut(s)	20, 139, 178
SaqAI	TTAA	2 cut(s)	96, 369
SatI	GCNGC	4 cut(s)	6, 86, 89, 179
Sau3AI	GATC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	77
SetI	ASST	7 cut(s)	22, 141, 180, 211, 295, 327, 355
SfaNI	GCATC	3 cut(s)	17, 156, 412
SfcI	CTRYAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	237, 417
TasI	AATT	2 cut(s)	237, 417
Tru1I	TTAA	2 cut(s)	96, 369
Tru9I	TTAA	2 cut(s)	96, 369
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	4 cut(s)	5, 85, 88, 178
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.