AT2G34620
ERF Family

Transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011360
Physical Location & Seq
Forward (+)
14577083 .. 14578382
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34620.1

Sequence Viewer

Length: 912 bp
ATGTCTGCAGCATTGAGCTCGTCTCTCTACATTTCCCCAAAGAAACCTTCATGTCCACAACAATCTCAATCCACATTCTTATCCACGAAACCAACCACCATCAAAACCAATCTCCATAGCCATCCTCTCTTCACTGTAGCTGATCAGACAGTAACCCTCCAGATGAAAGAGAAGATCCTCTGTCTCGAGCTAATGGGAATTGACTCAGGAAAAGCCCTTTCTCTCAACCCATGTCTCTGCTCAGCCCCCCTTGACTCCATCCAATCCGTCCTCCATTTCCTTCAATCAAAAGGAATCTACCCAAATGACCTCCCAAGAATCTTGGGGATGTGTCCTAAGATCCTCACTTCCGACGTCAGAACAGAACTGTACCCTGTTTTCATGTTCCTGTCGAATGATCTCCATGTCCCTGAGAATGCGTTCAGAAGAGTGATCAAGAAATGTCCAAGGCTCCTTATTAGCAGTGTAGAAGACCAGCTCAAACCTGCTCTCTTCTACTTGCAGAGACTTGGTCTCAAGGATCTTGAAGCTCTTGCTTACCAAGATCCTATCTTGTTGGTGTCTAGTGTTGAACACACTCTCATCCCAAAGCTTAGATTCTTGGAGAGTATAGGGTTCTCAAGACCAGAAGCGATTGGAATGATCCTAAGATGTCCAGCATTATTCACATTCAGCATAGAGAACAACTTCAAACCAAAACTGGATTACTTCATGAGTGAGATCAAAGGAAAACTAGAGAATCTAAAGGAGTTTCCACAGTATTTTGCCTTCAGTCTAGAGAAAAGGATAAAGCCAAGACACTTAGAATCAATGGAGAGAGGATTAGAGTTGCCACTGTCATTGATGCTTAAGAGCACTGATGAAGAGTTCGAGCAGTTGCTCACAAACCCCTCTTCAGTGGCAAACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

303

Amino Acids

34.25

Weight (kDa)

8.39

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 86 - 174 9.8e-11 mTERF
mTERF PF02536 133 - 291 2.5e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 493
AclWI GGATC 5 cut(s) 169, 334, 528, 539, 637
AcuI CTGAAG 2 cut(s) 754, 879
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 371
AflII CTTAAG 1 cut(s) 848
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 4 cut(s) 284, 527, 572, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 6 cut(s) 18, 140, 190, 478, 530, 592
AluI AGCT 6 cut(s) 18, 140, 190, 478, 530, 592
Alw21I GWGCWC 2 cut(s) 20, 857
Alw26I GTCTC 5 cut(s) 27, 188, 239, 499, 518
AlwI GGATC 5 cut(s) 169, 334, 528, 539, 637
Ama87I CYCGRG 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 8
Asp700I GAANNNNTTC 2 cut(s) 419, 686
AvaI CYCGRG 1 cut(s) 185
BanII GRGCYC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 2 cut(s) 20, 857
BbvI GCAGC 1 cut(s) 20
BccI CCATC 3 cut(s) 107, 129, 266
BcgI CGANNNNNNTGC 1 cut(s) 34
BclI TGATCA 2 cut(s) 142, 432
BcoDI GTCTC 5 cut(s) 27, 188, 239, 499, 518
BfaI CTAG 3 cut(s) 564, 734, 776
BfmI CTRYAG 2 cut(s) 6, 135
BfrI CTTAAG 1 cut(s) 848
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 1 cut(s) 9
BlpI GCTNAGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 452
BmsI GCATC 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 1 cut(s) 143
Bpu1102I GCTNAGC 1 cut(s) 241
BpuEI CTTGAG 2 cut(s) 500, 604
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 4 cut(s) 121, 258, 333, 582
BseMII CTCAG 3 cut(s) 219, 255, 402
BseNI ACTGG 1 cut(s) 705
BseXI GCAGC 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 20, 857
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 392
BsmAI GTCTC 5 cut(s) 27, 188, 239, 499, 518
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 20, 857
Bsp143I GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
Bsp1720I GCTNAGC 1 cut(s) 241
BspCNI CTCAG 3 cut(s) 218, 254, 403
BspHI TCATGA 1 cut(s) 711
BspLI GGNNCC 1 cut(s) 452
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 5 cut(s) 169, 334, 528, 539, 637
BspTI CTTAAG 1 cut(s) 848
BspTNI GGTCTC 1 cut(s) 518
BsrI ACTGG 1 cut(s) 705
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 446
Bst4CI ACNGT 5 cut(s) 136, 151, 369, 759, 837
Bst6I CTCTTC 5 cut(s) 134, 421, 497, 858, 898
BstACI GRCGYC 1 cut(s) 354
BstAFI CTTAAG 1 cut(s) 848
BstDEI CTNAG 7 cut(s) 205, 241, 336, 411, 593, 647, 802
BstF5I GGATG 4 cut(s) 121, 258, 333, 582
BstKTI GATC 9 cut(s) 145, 177, 342, 400, 435, 523, 547, 645, 723
BstMAI GTCTC 5 cut(s) 27, 188, 239, 499, 518
BstMBI GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
BstSFI CTRYAG 2 cut(s) 6, 135
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 4 cut(s) 174, 339, 520, 544
BstYI RGATCY 4 cut(s) 174, 339, 520, 544
BtsCI GGATG 4 cut(s) 121, 258, 333, 582
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 5 cut(s) 132, 469, 833, 855, 903
BveI ACCTGC 1 cut(s) 493
CciI TCATGA 1 cut(s) 711
Csp6I GTAC 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 5 cut(s) 51, 231, 382, 404, 712
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 7 cut(s) 205, 241, 336, 411, 593, 647, 802
DpnI GATC 9 cut(s) 144, 176, 341, 399, 434, 522, 546, 644, 722
DpnII GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
Eam1104I CTCTTC 5 cut(s) 134, 421, 497, 858, 898
EarI CTCTTC 5 cut(s) 134, 421, 497, 858, 898
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 518
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 754, 879
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 446
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 5 cut(s) 54, 234, 385, 407, 715
FaiI YATR 8 cut(s) 52, 117, 232, 383, 405, 611, 677, 713
FaqI GGGAC 1 cut(s) 392
FatI CATG 5 cut(s) 50, 230, 381, 403, 711
FbaI TGATCA 2 cut(s) 142, 432
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 4 cut(s) 108, 245, 340, 569
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 3 cut(s) 564, 734, 776
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 5 cut(s) 54, 234, 385, 407, 715
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 7 cut(s) 203, 254, 294, 318, 597, 739, 806
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 4 cut(s) 147, 352, 359, 425
Hpy188III TCNNGA 8 cut(s) 160, 185, 207, 436, 524, 621, 712, 776
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 57, 290, 778
HpyCH4III ACNGT 5 cut(s) 136, 151, 369, 759, 837
HpyCH4IV ACGT 2 cut(s) 354, 906
HpyCH4V TGCA 2 cut(s) 8, 502
HpyF3I CTNAG 7 cut(s) 205, 241, 336, 411, 593, 647, 802
HpySE526I ACGT 2 cut(s) 354, 906
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 5 cut(s) 54, 234, 385, 407, 715
Ksp22I TGATCA 2 cut(s) 142, 432
Kzo9I GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
LmnI GCTCC 1 cut(s) 456
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 834
MaeI CTAG 3 cut(s) 564, 734, 776
MaeII ACGT 2 cut(s) 354, 906
MaeIII GTNAC 1 cut(s) 151
MalI GATC 9 cut(s) 144, 176, 341, 399, 434, 522, 546, 644, 722
MboI GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
MboII GAAGA 7 cut(s) 121, 184, 438, 482, 484, 875, 885
MflI RGATCY 4 cut(s) 174, 339, 520, 544
MhlI GDGCHC 2 cut(s) 20, 857
MluCI AATT 1 cut(s) 198
MlyI GAGTC 2 cut(s) 197, 248
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 8 cut(s) 135, 167, 188, 281, 320, 353, 812, 901
MroXI GAANNNNTTC 2 cut(s) 419, 686
MseI TTAA 1 cut(s) 849
MspCI CTTAAG 1 cut(s) 848
Mva1269I GAATGC 1 cut(s) 421
NdeII GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
NlaIII CATG 5 cut(s) 54, 234, 385, 407, 715
NlaIV GGNNCC 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 185
PagI TCATGA 1 cut(s) 711
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 2 cut(s) 419, 686
PfeI GAWTC 5 cut(s) 294, 318, 597, 739, 806
PflFI GACNNNGTC 1 cut(s) 510
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 2 cut(s) 197, 248
PpsI GAGTC 2 cut(s) 197, 248
Psp124BI GAGCTC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 452
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 4 cut(s) 174, 339, 520, 544
PsyI GACNNNGTC 1 cut(s) 510
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 9 cut(s) 142, 174, 339, 397, 432, 520, 544, 642, 720
SchI GAGTC 2 cut(s) 197, 248
SduI GDGCHC 2 cut(s) 20, 857
SfaNI GCATC 1 cut(s) 834
SfcI CTRYAG 2 cut(s) 6, 135
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 4 cut(s) 185, 515, 619, 848
SmoI CTYRAG 4 cut(s) 185, 515, 619, 848
Sse9I AATT 1 cut(s) 198
SspMI CTAG 3 cut(s) 564, 734, 776
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 5 cut(s) 136, 151, 369, 759, 837
TaiI ACGT 2 cut(s) 357, 909
TaqI TCGA 3 cut(s) 186, 392, 870
TasI AATT 1 cut(s) 198
TfiI GAWTC 5 cut(s) 294, 318, 597, 739, 806
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 5 cut(s) 139, 469, 840, 862, 903
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 5 cut(s) 39, 179, 370, 700, 876
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 5 cut(s) 139, 469, 840, 862, 903
Tth111I GACNNNGTC 1 cut(s) 510
Vha464I CTTAAG 1 cut(s) 848
XbaI TCTAGA 1 cut(s) 775
XhoI CTCGAG 1 cut(s) 185
XmnI GAANNNNTTC 2 cut(s) 419, 686
XspI CTAG 3 cut(s) 564, 734, 776
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.