Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011360

Physical Location & Seq

Genomic Coordinates Reverse (-)

2949796 .. 2950725

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCCAGTAACAGCAGCAGCTCTGCAGTCTTCTCTATGCTTCACTCCTCATAATCCATCATCATCTTCATCTTCTGTTCCCTCTAATGTGCAGACCTCAAACACCACCGCCCAATTGGCAACAAAACCCCAAAGCCTTCTCCAAAAGCACCCACTCTACACCCCCACCCACACCAAACTCTCCCTCCAATTCAAAGAGAAAATCCTCTGCCTTGAAATCATGGGAGTCGATGCAGGCAAGGCACTCTCTCAAAACCCTAACCTCCACTCTGCAACTCTCGACTCAATCCAAGCCATAATAACCTTCCTTCAATCCAAAGGCATTCAAGAAAAGGACTTGGCCAAGATCTTTGGGATGTGCCCCCATATCCTCACCTCCAACATCAAAACTGAGCTCATTCCAGTTTTCAACTTCCTCTCAGATTACCTCCAAGTCCCAGAATACAACTTCAGAAAGGTCATCAACAAGTGCCCGAGATTGCTTGCTTCAAGTGTGAGTGACCAGCTCAAACCAGCTTTGTTTTATCTTCAGAGACTTGGGTTCAAGGATTTGCATGCCTTAGCTTACCATGATTCTGTGCTCTTGGTTTCAAGTGTGGAGAAGACCCTGATTCCCAAGTTAAACTTTTTGGTGGATTTGGGGATTCCAAGAGATGAGGCTGTGGGGTTGGTGCTGAGGTGTCCAGCATTACTCACTTTCAGCATTGAGAATAACTACAAGCCAAAGTTTGAGTACTTCTCTGTGGATATGGGATTGAAATTGGAGGACTTGAAGGAGTTTCCTCAATACTTTGCCTTTAGTTTGGAGAAGAGGATAAAGCCAAGGCATATGGAGGTTGTGCAAAGTGGAGTACATGTGCCTTTGCCGCTTATGCTGAAGAGCACTGCTGAGGAATTTAAGGAGTTGCTGAAGCAGTTTGGCGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

310

Amino Acids

34.49

Weight (kDa)

8.82

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	64 - 182	1.4e-11	mTERF
mTERF	PF02536	194 - 300	1.9e-24	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34620
fragaria_vesca	FvH4_3g05090
prunus_persica	Prupe.4G085200_v2.0.a1
pyrus_communis	pycom05g26050 pycom10g21500
rosa_chinensis	RchiOBHm_Chr5g0014781
rosa_laevigata	RLG00000032140
rosa_multiflora	Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii	Rroxscaffold_1G00061760
rosa_rugosa	Rorug05G0020800
rosa_samantha	Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana	Rw5G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	108, 866, 921
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	4 cut(s)	433, 512, 896, 929
AfaI	GTAC	2 cut(s)	734, 852
AflIII	ACRYGT	1 cut(s)	853
AluBI	AGCT	5 cut(s)	20, 394, 505, 515, 563
AluI	AGCT	5 cut(s)	20, 394, 505, 515, 563
Alw21I	GWGCWC	3 cut(s)	396, 582, 884
Alw26I	GTCTC	1 cut(s)	526
Ama87I	CYCGRG	1 cut(s)	472
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	14, 17
ApoI	RAATTY	1 cut(s)	893
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	472
BaeGI	GKGCMC	2 cut(s)	362, 473
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	21, 608
Bbv12I	GWGCWC	3 cut(s)	396, 582, 884
BbvCI	CCTCAGC	2 cut(s)	674, 888
BbvI	GCAGC	2 cut(s)	26, 29
BccI	CCATC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	526
BfmI	CTRYAG	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	3 cut(s)	15, 18, 866
BlsI	GCNGC	3 cut(s)	16, 19, 867
BmcAI	AGTACT	1 cut(s)	734
BmeT110I	CYCGRG	1 cut(s)	472
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	2 cut(s)	21, 608
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
Bpu10I	CCTNAGC	3 cut(s)	559, 674, 888
BsaJI	CCNNGG	1 cut(s)	821
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 840, 870
Bse1I	ACTGG	2 cut(s)	5, 401
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	1 cut(s)	360
BseMII	CTCAG	4 cut(s)	381, 432, 665, 879
BseNI	ACTGG	2 cut(s)	5, 401
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	2 cut(s)	362, 473
BseXI	GCAGC	2 cut(s)	26, 29
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	341
BsiHKAI	GWGCWC	3 cut(s)	396, 582, 884
BsiHKCI	CYCGRG	1 cut(s)	472
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	472
Bsp1286I	GDGCHC	5 cut(s)	362, 396, 473, 582, 884
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	3 cut(s)	108, 866, 921
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	4 cut(s)	382, 431, 666, 880
BspMAI	CTGCAG	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	872
BsrI	ACTGG	2 cut(s)	5, 401
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	821
Bst6I	CTCTTC	2 cut(s)	803, 872
BstC8I	GCNNGC	3 cut(s)	235, 483, 555
BstDEI	CTNAG	5 cut(s)	390, 418, 559, 674, 888
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 239, 865, 871
BstNSI	RCATGY	2 cut(s)	557, 857
BstSFI	CTRYAG	1 cut(s)	23
BstSLI	GKGCMC	2 cut(s)	362, 473
BstV1I	GCAGC	2 cut(s)	26, 29
BstV2I	GAAGAC	2 cut(s)	21, 608
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	360
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	882
Cac8I	GCNNGC	3 cut(s)	235, 483, 555
Csp6I	GTAC	2 cut(s)	733, 851
CviAII	CATG	4 cut(s)	220, 554, 569, 854
CviQI	GTAC	2 cut(s)	733, 851
DdeI	CTNAG	5 cut(s)	390, 418, 559, 674, 888
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	803, 872
EarI	CTCTTC	2 cut(s)	803, 872
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	821
Eco24I	GRGCYC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	4 cut(s)	433, 512, 896, 929
Eco88I	CYCGRG	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	821
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	821
FaeI	CATG	4 cut(s)	223, 557, 572, 857
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	219, 553, 568, 853
FauNDI	CATATG	1 cut(s)	828
Fnu4HI	GCNGC	3 cut(s)	15, 18, 866
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	3 cut(s)	15, 18, 866
GluI	GCNGC	3 cut(s)	15, 18, 866
HaeIII	GGCC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	223, 557, 572, 857
HinfI	GANTC	5 cut(s)	225, 281, 572, 610, 643
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	421, 452, 531
Hpy188III	TCNNGA	2 cut(s)	278, 326
HpyAV	CCTTC	4 cut(s)	146, 313, 317, 766
HpyCH4V	TGCA	6 cut(s)	25, 91, 233, 272, 553, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 239, 865, 871
HpyF3I	CTNAG	5 cut(s)	390, 418, 559, 674, 888
Hsp92II	CATG	4 cut(s)	223, 557, 572, 857
Kzo9I	GATC	1 cut(s)	345
LguI	GCTCTTC	1 cut(s)	872
LpnPI	CCDG	8 cut(s)	18, 219, 414, 450, 515, 525, 620, 696
Lsp1109I	GCAGC	2 cut(s)	26, 29
LweI	GCATC	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	7, 497
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	7 cut(s)	21, 57, 63, 518, 613, 820, 889
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	5 cut(s)	362, 396, 473, 582, 884
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	4 cut(s)	113, 188, 758, 893
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	234, 275
MmeI	TCCRAC	1 cut(s)	402
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	620, 897
Msp20I	TGGCCA	1 cut(s)	341
MunI	CAATTG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	116, 239, 865, 871
NdeI	CATATG	1 cut(s)	828
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	4 cut(s)	223, 557, 572, 857
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	2 cut(s)	557, 857
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	1 cut(s)	853
PciSI	GCTCTTC	1 cut(s)	872
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	572, 610, 643
PkrI	GCNGC	3 cut(s)	16, 19, 867
PleI	GAGTC	2 cut(s)	233, 275
PpsI	GAGTC	2 cut(s)	233, 275
PscI	ACATGT	1 cut(s)	853
Psp124BI	GAGCTC	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	2 cut(s)	734, 852
RsaNI	GTAC	2 cut(s)	733, 851
SacI	GAGCTC	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	872
SaqAI	TTAA	2 cut(s)	620, 897
SatI	GCNGC	3 cut(s)	15, 18, 866
Sau3AI	GATC	1 cut(s)	345
ScaI	AGTACT	1 cut(s)	734
SchI	GAGTC	2 cut(s)	234, 275
SduI	GDGCHC	5 cut(s)	362, 396, 473, 582, 884
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	4 cut(s)	113, 188, 758, 893
SsiI	CCGC	3 cut(s)	108, 866, 921
SstI	GAGCTC	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	821
TaqI	TCGA	2 cut(s)	228, 279
TasI	AATT	4 cut(s)	113, 188, 758, 893
TatI	WGTACW	2 cut(s)	732, 850
TauI	GCSGC	1 cut(s)	868
TfiI	GAWTC	3 cut(s)	572, 610, 643
Tru1I	TTAA	2 cut(s)	620, 897
Tru9I	TTAA	2 cut(s)	620, 897
TscAI	CASTG	1 cut(s)	889
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	14, 17
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	889
XapI	RAATTY	1 cut(s)	893
XceI	RCATGY	2 cut(s)	557, 857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.