Rh5DG112900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011360
Physical Location & Seq
Forward (+)
10244404 .. 10244988
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG112900.1

Sequence Viewer

Length: 585 bp
ATGATGATATTTCCAAAAAGAGGCCTCTCTCTCTCTCTCTCCCTTTGTTCCTCAAAAACCATGCCAGTAACAACAGCAGCTCTGCAGTCTTCTCTATGCTTCTCTCCTCATAACCCATCATCATCATCATGTTCATCTTCTATTCCCTCCAATTTCCAGACCTCCAACACCACCACCCATTTGGCAGCAAAACCCCAAAGCATTCTCCAAAAGCACCCACTATACACCCCCACCCACACCAAACTCTCCCTCCAATTCAAAGAGAAAATCCTCTGCCTTGAAATCATGGGAGTTGATGCAGGCAAAGCACTCTCCCAAAACCCTAATCTCCACTCAGCAACTCTGGACTCAATCCAAGCCATAATCACCTTCCTTCAATCCAAAGGCATACAAGAGAAGGACTTGGCCAAGATCTTTGGGATGTGCCCCCATATCCTCACCTCCAACATCAAAACTGAGCTCACCCCAGTTTTCGACTTTCTCTCAGATTACCTCCAAGTCCCAGAACATAACTTCAGAAAGGTCATCAACAAATGCCCAAGATTGCTTGCTTCAAGTGTGAGTGACCAGCTCAAACCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

194

Amino Acids

21.23

Weight (kDa)

9.2

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 86 - 188 1.1e-10 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 4 cut(s) 259, 281, 377, 555
AluBI AGCT 4 cut(s) 80, 460, 571, 581
AluI AGCT 4 cut(s) 80, 460, 571, 581
Alw21I GWGCWC 1 cut(s) 462
AoxI GGCC 2 cut(s) 22, 405
ApeKI GCWGC 2 cut(s) 77, 185
AsuHPI GGTGA 3 cut(s) 358, 430, 454
BaeGI GKGCMC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 407
BanII GRGCYC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 89, 197
BccI CCATC 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 411
BisI GCNGC 2 cut(s) 78, 186
BlsI GCNGC 2 cut(s) 79, 187
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 65, 467
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 348, 447, 498
BseNI ACTGG 2 cut(s) 65, 467
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 2 cut(s) 89, 197
BshFI GGCC 2 cut(s) 24, 407
BsiHKAI GWGCWC 1 cut(s) 462
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 2 cut(s) 24, 407
Bsp1286I GDGCHC 2 cut(s) 428, 462
Bsp143I GATC 1 cut(s) 411
BspANI GGCC 2 cut(s) 24, 407
BspCNI CTCAG 3 cut(s) 347, 448, 497
BspMAI CTGCAG 1 cut(s) 87
BsrI ACTGG 2 cut(s) 65, 467
BssMI GATC 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 301, 549
BstDEI CTNAG 3 cut(s) 334, 456, 484
BstF5I GGATG 1 cut(s) 426
BstKTI GATC 1 cut(s) 414
BstMBI GATC 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 2 cut(s) 89, 197
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 1 cut(s) 411
BsuRI GGCC 2 cut(s) 24, 407
BtsCI GGATG 1 cut(s) 426
Cac8I GCNNGC 2 cut(s) 301, 549
CviAII CATG 3 cut(s) 61, 129, 286
CviJI RGCY 7 cut(s) 24, 80, 359, 407, 460, 571, 581
CviKI_1 RGCY 7 cut(s) 24, 80, 359, 407, 460, 571, 581
DdeI CTNAG 3 cut(s) 334, 456, 484
DpnI GATC 1 cut(s) 413
DpnII GATC 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 460
Eco147I AGGCCT 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 462
FaeI CATG 3 cut(s) 64, 132, 289
FaqI GGGAC 1 cut(s) 485
FatI CATG 3 cut(s) 60, 128, 285
Fnu4HI GCNGC 2 cut(s) 78, 186
FokI GGATG 1 cut(s) 433
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 2 cut(s) 78, 186
GluI GCNGC 2 cut(s) 78, 186
HaeIII GGCC 2 cut(s) 24, 407
Hin1II CATG 3 cut(s) 64, 132, 289
HinfI GANTC 1 cut(s) 347
HphI GGTGA 3 cut(s) 358, 430, 454
Hpy188I TCNGA 2 cut(s) 487, 518
Hpy188III TCNNGA 2 cut(s) 157, 344
HpyAV CCTTC 3 cut(s) 379, 383, 391
HpyCH4V TGCA 2 cut(s) 85, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 334, 456, 484
Hsp92II CATG 3 cut(s) 64, 132, 289
Kzo9I GATC 1 cut(s) 411
LpnPI CCDG 7 cut(s) 78, 170, 285, 329, 480, 516, 581
Lsp1109I GCAGC 2 cut(s) 89, 197
LweI GCATC 1 cut(s) 286
MaeIII GTNAC 2 cut(s) 67, 563
MalI GATC 1 cut(s) 413
MboI GATC 1 cut(s) 411
MboII GAAGA 2 cut(s) 81, 129
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 2 cut(s) 428, 462
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 2 cut(s) 151, 254
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 189, 468
Mox20I TGGCCA 1 cut(s) 407
MscI TGGCCA 1 cut(s) 407
MseI TTAA 1 cut(s) 583
MslI CAYNNNNRTG 1 cut(s) 127
Msp20I TGGCCA 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 411
NlaIII CATG 3 cut(s) 64, 132, 289
NmuCI GTSAC 1 cut(s) 563
PceI AGGCCT 1 cut(s) 24
PctI GAATGC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 79, 187
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 462
PstI CTGCAG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 411
RseI CAYNNNNRTG 1 cut(s) 127
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 1 cut(s) 583
SatI GCNGC 2 cut(s) 78, 186
Sau3AI GATC 1 cut(s) 411
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 2 cut(s) 428, 462
SetI ASST 9 cut(s) 82, 164, 371, 443, 462, 495, 525, 573, 583
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 2 cut(s) 151, 254
SseBI AGGCCT 1 cut(s) 24
SstI GAGCTC 1 cut(s) 462
StuI AGGCCT 1 cut(s) 24
TaqI TCGA 1 cut(s) 474
TasI AATT 2 cut(s) 151, 254
Tru1I TTAA 1 cut(s) 583
Tru9I TTAA 1 cut(s) 583
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 2 cut(s) 77, 185
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.