Rh5DG113000
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011360
Physical Location & Seq
Forward (+)
10245042 .. 10245407
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG113000.1

Sequence Viewer

Length: 366 bp
ATGACTCTGTGCTCTTGGCCGGTTTCAAGTGTGGAGAAGACCCTGATTCCCAAATTAAATTTTTTGGTGGGTTTGGGAATTCCAAGAGTTGAGGCTGTGGGGTTGGTGCTGAGGTGTCCAGCATTGCTCACTTTCAGTATTGAGAATAACTACAAGCCAAAGTATGAGTACTTCTCTGTGGATATGGGGTTGAAATTGGAGGATTTGAAGGAGTTTCCTCAGTACTTTGCTTTTAGTTTGGAGAAGAGGATAAAGCCAAGGCATATGGAGGTTGTGCAAAGTGGAGTACACGTGCCATTGCCACTTATGCTCAAAAGCACGGATGAGGAGTTCAGGGAGTTGCTGAAGCAATTTGGGGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

7.76

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 10 - 111 4.9e-25 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 2 cut(s) 58, 78
AcuI CTGAAG 1 cut(s) 365
AcvI CACGTG 1 cut(s) 292
AfaI GTAC 3 cut(s) 170, 224, 288
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 3 cut(s) 27, 193, 208
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
Alw21I GWGCWC 1 cut(s) 14
AoxI GGCC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 58, 78
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbrPI CACGTG 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 110
BmcAI AGTACT 2 cut(s) 170, 224
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bpu10I CCTNAGC 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bse118I RCCGGY 1 cut(s) 19
Bse3DI GCAATG 2 cut(s) 122, 296
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 122, 296
BseMII CTCAG 2 cut(s) 101, 233
BseRI GAGGAG 1 cut(s) 341
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 14
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 2 cut(s) 102, 232
BsrDI GCAATG 2 cut(s) 122, 296
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 110, 219
BstF5I GGATG 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 19
Csp6I GTAC 3 cut(s) 169, 223, 287
CviJI RGCY 4 cut(s) 19, 95, 157, 256
CviKI_1 RGCY 4 cut(s) 19, 95, 157, 256
CviQI GTAC 3 cut(s) 169, 223, 287
DdeI CTNAG 2 cut(s) 110, 219
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 365
Eco72I CACGTG 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 257
FaiI YATR 5 cut(s) 165, 185, 264, 266, 308
FauNDI CATATG 1 cut(s) 264
FokI GGATG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 20
HinfI GANTC 2 cut(s) 4, 46
HpaII CCGG 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 2 cut(s) 110, 219
HpySE526I ACGT 1 cut(s) 291
LpnPI CCDG 4 cut(s) 33, 56, 132, 319
MaeII ACGT 1 cut(s) 291
MboII GAAGA 2 cut(s) 49, 256
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 53, 58, 78, 194, 350
MnlI CCTC 7 cut(s) 85, 105, 193, 228, 240, 262, 319
MseI TTAA 1 cut(s) 56
MspI CCGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeI CATATG 1 cut(s) 264
PfeI GAWTC 1 cut(s) 46
PmaCI CACGTG 1 cut(s) 292
PmlI CACGTG 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 292
PspCI CACGTG 1 cut(s) 292
RsaI GTAC 3 cut(s) 170, 224, 288
RsaNI GTAC 3 cut(s) 169, 223, 287
SaqAI TTAA 1 cut(s) 56
ScaI AGTACT 2 cut(s) 170, 224
SduI GDGCHC 1 cut(s) 14
SetI ASST 3 cut(s) 116, 273, 294
Sse9I AATT 5 cut(s) 53, 58, 78, 194, 350
StyI CCWWGG 1 cut(s) 257
TaiI ACGT 1 cut(s) 294
TasI AATT 5 cut(s) 53, 58, 78, 194, 350
TatI WGTACW 3 cut(s) 168, 222, 286
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 335
XapI RAATTY 2 cut(s) 58, 78
ZrmI AGTACT 2 cut(s) 170, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.