Rh5AG116600
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011360
Physical Location & Seq
Forward (+)
10825256 .. 10825555
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG116600.1

Sequence Viewer

Length: 300 bp
ATGGGAGTTGATGCAGGCAAAACACTCTCCCAAAACCCTAATCTCCACTCAGCAACTCTCGACTCAATCCAAGCCATAATCACCTTCCTTCAATCCAAAGGCATACAAGAGAAGGACTTGGCCAAGATCTTTGGGATGTGCCCCCATATCCTCACCTCCAACATCAAAACTGAGCTCACCCCAGTTTTCGACTTTCTCTCAGATTACCTCCAAGTCCCAGAACATAACTTCAGAAAGGTCATCAACAAATGCCCAAGATTGCTTGCTTCAAGTGTGAGTGACCAGCTCAAACCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

99

Amino Acids

10.94

Weight (kDa)

7.81

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 22 - 94 9e-11 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 92, 270
AluBI AGCT 3 cut(s) 175, 286, 296
AluI AGCT 3 cut(s) 175, 286, 296
Alw21I GWGCWC 1 cut(s) 177
AoxI GGCC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 73, 145, 169
BaeGI GKGCMC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BglII AGATCT 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 141
BseMII CTCAG 3 cut(s) 63, 162, 213
BseNI ACTGG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 143
BshFI GGCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 143, 177
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 3 cut(s) 62, 163, 212
BsrI ACTGG 1 cut(s) 182
BssMI GATC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 16, 264
BstDEI CTNAG 3 cut(s) 49, 171, 199
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 16, 264
CviJI RGCY 5 cut(s) 74, 122, 175, 286, 296
CviKI_1 RGCY 5 cut(s) 74, 122, 175, 286, 296
DdeI CTNAG 3 cut(s) 49, 171, 199
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 177
FaiI YATR 4 cut(s) 77, 104, 147, 225
FaqI GGGAC 1 cut(s) 200
FokI GGATG 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 122
HinfI GANTC 1 cut(s) 62
HphI GGTGA 3 cut(s) 73, 145, 169
Hpy188I TCNGA 2 cut(s) 202, 233
Hpy188III TCNNGA 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 94, 98, 106
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 49, 171, 199
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 3 cut(s) 195, 231, 296
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 143, 177
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 3 cut(s) 161, 166, 218
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 1 cut(s) 298
Msp20I TGGCCA 1 cut(s) 122
NdeII GATC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 278
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 126
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 298
Sau3AI GATC 1 cut(s) 126
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 2 cut(s) 143, 177
SetI ASST 7 cut(s) 86, 158, 177, 210, 240, 288, 298
SstI GAGCTC 1 cut(s) 177
TaqI TCGA 2 cut(s) 60, 189
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.