Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013610.1

Orthogroup ID

OG0011360

Physical Location & Seq

Genomic Coordinates Reverse (-)

49630 .. 50569

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013610.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgccagtaacaacagcagctctgcagtcttctctatgcttctctcctcataacccatcatcatcatcatcttcatcttctattccctccaatttgcagacctccaacaccaccacccatttgacagcaaaaccgcaaagcattctccaaaagcacccactatacacccccacccacaccaaactctccctccaattcaaagagaaaatcctctgccttgaaatcatgggagttgatgcaggcaaagcactctcccaaaaccctaatctccactcagcaactctcgactcaatccaagccataatcaccttccttcaatccaaaggcatacaagagaaggacttggccaagatctttgggatgtgcccccatatcctcacctccaacatcaaaactgagctcatcccagttttcaatttcctctcagattacctccaagtcccagaacataacttcagaaaggtcatcaacaaatgcccaagattgcttgcttcaagtagacttgggttcaaggacttgcatgccttagcttaccatgactctgtgctcttggtttcgagtgtggaaaagaccctgattcccaagttaaattttttggtcggtttggggattccaagagatgaggctgtggggttggtgctgaggtgtccagcattgctcactttcagtattgagaataactacaagccaaagtatgagtacttctctgtggatatggggttgaaattggaggatttgaaggagtttcctcagtactttgcttttagtttggagaagaggataaagccaaggcatatggaggttgtgcaaagtggggtacatgtgcctttgccacttatgctcaagagcactgatgaggagtttagggagttgctgaagcaatttgggggtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

298

Amino Acids

33.25

Weight (kDa)

8.85

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34620
fragaria_vesca	FvH4_3g05090
prunus_persica	Prupe.4G085200_v2.0.a1
pyrus_communis	pycom05g26050 pycom10g21500
rosa_chinensis	RchiOBHm_Chr5g0014781
rosa_laevigata	RLG00000032140
rosa_multiflora	Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii	Rroxscaffold_1G00061760
rosa_rugosa	Rorug05G0020800
rosa_samantha	Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana	Rw5G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	499
AciI	CCGC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	2 cut(s)	439, 896
AfaI	GTAC	3 cut(s)	701, 755, 819
AflIII	ACRYGT	1 cut(s)	820
AgsI	TTSAA	8 cut(s)	199, 221, 317, 415, 495, 511, 724, 739
AluBI	AGCT	3 cut(s)	20, 400, 530
AluI	AGCT	3 cut(s)	20, 400, 530
Alw21I	GWGCWC	3 cut(s)	402, 549, 851
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	589
AsuHPI	GGTGA	2 cut(s)	298, 370
BaeGI	GKGCMC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	402
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	3 cut(s)	402, 549, 851
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	64
BfmI	CTRYAG	1 cut(s)	23
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmcAI	AGTACT	2 cut(s)	701, 755
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	2 cut(s)	526, 641
BpuEI	CTTGAG	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	788
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	2 cut(s)	5, 407
Bse3DI	GCAATG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	2 cut(s)	366, 402
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	5 cut(s)	288, 387, 438, 632, 764
BseNI	ACTGG	2 cut(s)	5, 407
BseRI	GAGGAG	2 cut(s)	36, 872
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	3 cut(s)	402, 549, 851
BslFI	GGGAC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	4 cut(s)	368, 402, 549, 851
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	5 cut(s)	287, 388, 437, 633, 763
BspMAI	CTGCAG	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	5, 407
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	788
Bst6I	CTCTTC	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	241, 489, 522
BstDEI	CTNAG	6 cut(s)	274, 396, 424, 526, 641, 750
BstF5I	GGATG	2 cut(s)	366, 402
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 838
BstNSI	RCATGY	2 cut(s)	524, 824
BstSFI	CTRYAG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	366, 402
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	3 cut(s)	241, 489, 522
Csp6I	GTAC	3 cut(s)	700, 754, 818
CviAII	CATG	4 cut(s)	226, 521, 536, 821
CviJI	RGCY	8 cut(s)	20, 299, 347, 400, 530, 626, 688, 787
CviKI_1	RGCY	8 cut(s)	20, 299, 347, 400, 530, 626, 688, 787
CviQI	GTAC	3 cut(s)	700, 754, 818
DdeI	CTNAG	6 cut(s)	274, 396, 424, 526, 641, 750
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	788
Eco24I	GRGCYC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	439, 896
EcoICRI	GAGCTC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	788
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	4 cut(s)	229, 524, 539, 824
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	225, 520, 535, 820
FauNDI	CATATG	1 cut(s)	795
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	373, 389
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	229, 524, 539, 824
HinfI	GANTC	4 cut(s)	287, 539, 577, 610
HphI	GGTGA	2 cut(s)	298, 370
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	427, 458
Hpy188III	TCNNGA	2 cut(s)	284, 844
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	4 cut(s)	319, 323, 331, 733
HpyCH4V	TGCA	5 cut(s)	25, 97, 239, 520, 808
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 838
HpyF3I	CTNAG	6 cut(s)	274, 396, 424, 526, 641, 750
Hsp92II	CATG	4 cut(s)	229, 524, 539, 824
Kzo9I	GATC	1 cut(s)	351
LpnPI	CCDG	6 cut(s)	18, 225, 420, 456, 587, 663
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	4 cut(s)	21, 63, 69, 787
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	4 cut(s)	368, 402, 549, 851
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	6 cut(s)	91, 194, 415, 589, 725, 881
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	281, 533
MmeI	TCCRAC	2 cut(s)	129, 408
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	245, 838
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	4 cut(s)	229, 524, 539, 824
NspI	RCATGY	2 cut(s)	524, 824
PaeI	GCATGC	1 cut(s)	524
PciI	ACATGT	1 cut(s)	820
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	577, 610
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	2 cut(s)	281, 533
PpsI	GAGTC	2 cut(s)	281, 533
PscI	ACATGT	1 cut(s)	820
Psp124BI	GAGCTC	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	3 cut(s)	701, 755, 819
RsaNI	GTAC	3 cut(s)	700, 754, 818
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	351
ScaI	AGTACT	2 cut(s)	701, 755
SchI	GAGTC	2 cut(s)	281, 533
SduI	GDGCHC	4 cut(s)	368, 402, 549, 851
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	6 cut(s)	91, 194, 415, 589, 725, 881
SsiI	CCGC	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	788
TaqI	TCGA	2 cut(s)	285, 557
TasI	AATT	6 cut(s)	91, 194, 415, 589, 725, 881
TatI	WGTACW	2 cut(s)	699, 753
TfiI	GAWTC	2 cut(s)	577, 610
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	1 cut(s)	856
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	856
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	2 cut(s)	524, 824
XmiI	GTMKAC	1 cut(s)	499
ZrmI	AGTACT	2 cut(s)	701, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.