Rw5G010040
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011360
Physical Location & Seq
Forward (+)
11029025 .. 11029964
940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010040.1

Sequence Viewer

Length: 837 bp
ATGCCAGTAACAACAGCAGCTCTGCAGTCTTCTCTATGCTTCTCTCCTCATAACCCATCATCATCATCATCTTCATCTTCTATTCCCTCCAATTTCCAGACCTCCAACACCACCACCCATTTGGCAGCAAAACCCCAAAGCATTCTCCAAAAGCACCCACTATACACCCCCACCCACACCAAACTCTCCCTCCAATTCAAAGAGAAAATCCTCTGCCTTGAAATCATGGGAGTTGATGCAGGCAAAGCACTCTCCCAAAACCCTAATCTCCACTCAGCAACTCTCGACTCAATCCAAGCCATAATCACCTTCCTTCAATCCAAAGGCATACAAGAGAAGGACTTGGCCAAGATCTTTGGGATGTGCCCCCATATCCTCACCTCCAACATCAAAACTGAGCTCACCCCAGTTTTCGACTTTCTCTCAGATTACCTCCAAGTCCCAGAACATAACTTCAGAAAGGTCATCAACAAATGCCCAAGATTGCTTGCTTCAAGTAGACTTGGGTTCAAGGACTTGCATGCCTTAGCTTACCATGACTCTGTGCTCTTGGTTTCAAATGAGGCTGTGGGGTTGGTGCTGAGGTGTCCAGCATTGCTCACTTTCAGTATTGAGAATAACTACAAGCCAAAGTATGAGTACTTCTCTGTGGATATGGGGTTGAAATTGGAGGATTTGAAGGAGTTTCCTCAGTACTTTGCTTTTAGTTTGGAGAAGAGGATAAAGCCAAGGCATATGGAGGTTGTGCAAAGTGGAGTACACGTGCCATTGCCACTTATGCTCAAAAGCACGGATGAGGAGTTCAGGGAGTTGCTGAAGCAATTTGGGGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

278

Amino Acids

31.06

Weight (kDa)

8.5

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 61 - 268 3e-34 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 499
AcoI YGGCCR 1 cut(s) 345
AcuI CTGAAG 2 cut(s) 439, 836
AcvI CACGTG 1 cut(s) 763
AfaI GTAC 3 cut(s) 641, 695, 759
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 8 cut(s) 199, 221, 317, 495, 511, 558, 664, 679
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 3 cut(s) 20, 400, 530
AluI AGCT 3 cut(s) 20, 400, 530
Alw21I GWGCWC 2 cut(s) 402, 549
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 17, 125
AsuHPI GGTGA 3 cut(s) 298, 370, 394
BaeGI GKGCMC 1 cut(s) 368
BalI TGGCCA 1 cut(s) 347
BanII GRGCYC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbrPI CACGTG 1 cut(s) 763
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 402, 549
BbvCI CCTCAGC 1 cut(s) 581
BbvI GCAGC 2 cut(s) 29, 137
BccI CCATC 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 23
BglII AGATCT 1 cut(s) 351
BisI GCNGC 2 cut(s) 18, 126
BlsI GCNGC 2 cut(s) 19, 127
BmcAI AGTACT 2 cut(s) 641, 695
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 226
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 629, 661
Bpu10I CCTNAGC 2 cut(s) 526, 581
BsaAI YACGTR 1 cut(s) 763
BsaJI CCNNGG 1 cut(s) 728
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 747, 777
Bse1I ACTGG 2 cut(s) 5, 407
Bse3DI GCAATG 2 cut(s) 593, 767
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 2 cut(s) 366, 799
BseMI GCAATG 2 cut(s) 593, 767
BseMII CTCAG 5 cut(s) 288, 387, 438, 572, 704
BseNI ACTGG 2 cut(s) 5, 407
BseRI GAGGAG 2 cut(s) 36, 812
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 2 cut(s) 29, 137
BshFI GGCC 1 cut(s) 347
BsiHKAI GWGCWC 2 cut(s) 402, 549
BslFI GGGAC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 3 cut(s) 368, 402, 549
Bsp143I GATC 1 cut(s) 351
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 5 cut(s) 287, 388, 437, 573, 703
BspMAI CTGCAG 1 cut(s) 27
BsrDI GCAATG 2 cut(s) 593, 767
BsrI ACTGG 2 cut(s) 5, 407
BssECI CCNNGG 1 cut(s) 728
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 728
Bst6I CTCTTC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 3 cut(s) 241, 489, 522
BstDEI CTNAG 6 cut(s) 274, 396, 424, 526, 581, 690
BstF5I GGATG 2 cut(s) 366, 799
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 245, 778
BstNSI RCATGY 1 cut(s) 524
BstSFI CTRYAG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 29, 137
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 351
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 366, 799
Cac8I GCNNGC 3 cut(s) 241, 489, 522
Csp6I GTAC 3 cut(s) 640, 694, 758
CviAII CATG 3 cut(s) 226, 521, 536
CviJI RGCY 8 cut(s) 20, 299, 347, 400, 530, 566, 628, 727
CviKI_1 RGCY 8 cut(s) 20, 299, 347, 400, 530, 566, 628, 727
CviQI GTAC 3 cut(s) 640, 694, 758
DdeI CTNAG 6 cut(s) 274, 396, 424, 526, 581, 690
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 439, 836
Eco72I CACGTG 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 3 cut(s) 229, 524, 539
FaqI GGGAC 1 cut(s) 425
FatI CATG 3 cut(s) 225, 520, 535
FauNDI CATATG 1 cut(s) 735
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 18, 126
FokI GGATG 2 cut(s) 373, 806
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 2 cut(s) 18, 126
GluI GCNGC 2 cut(s) 18, 126
HaeIII GGCC 1 cut(s) 347
Hin1II CATG 3 cut(s) 229, 524, 539
HinfI GANTC 2 cut(s) 287, 539
HphI GGTGA 3 cut(s) 298, 370, 394
Hpy166II GTNNAC 2 cut(s) 500, 760
Hpy188I TCNGA 2 cut(s) 427, 458
Hpy188III TCNNGA 2 cut(s) 97, 284
Hpy8I GTNNAC 2 cut(s) 500, 760
HpyAV CCTTC 4 cut(s) 319, 323, 331, 673
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 4 cut(s) 25, 239, 520, 748
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 778
HpyF3I CTNAG 6 cut(s) 274, 396, 424, 526, 581, 690
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 3 cut(s) 229, 524, 539
Kzo9I GATC 1 cut(s) 351
LpnPI CCDG 7 cut(s) 18, 110, 225, 420, 456, 603, 790
Lsp1109I GCAGC 2 cut(s) 29, 137
LweI GCATC 1 cut(s) 226
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 4 cut(s) 21, 63, 69, 727
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 3 cut(s) 368, 402, 549
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 4 cut(s) 91, 194, 665, 821
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 2 cut(s) 281, 533
MmeI TCCRAC 2 cut(s) 129, 408
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
Msp20I TGGCCA 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 245, 778
NdeI CATATG 1 cut(s) 735
NdeII GATC 1 cut(s) 351
NlaIII CATG 3 cut(s) 229, 524, 539
NspI RCATGY 1 cut(s) 524
PaeI GCATGC 1 cut(s) 524
PctI GAATGC 1 cut(s) 141
PkrI GCNGC 2 cut(s) 19, 127
PleI GAGTC 2 cut(s) 281, 533
PmaCI CACGTG 1 cut(s) 763
PmlI CACGTG 1 cut(s) 763
PpsI GAGTC 2 cut(s) 281, 533
Ppu21I YACGTR 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 402
PspCI CACGTG 1 cut(s) 763
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 3 cut(s) 641, 695, 759
RsaNI GTAC 3 cut(s) 640, 694, 758
SacI GAGCTC 1 cut(s) 402
SatI GCNGC 2 cut(s) 18, 126
Sau3AI GATC 1 cut(s) 351
ScaI AGTACT 2 cut(s) 641, 695
SchI GAGTC 2 cut(s) 281, 533
SduI GDGCHC 3 cut(s) 368, 402, 549
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 23
SphI GCATGC 1 cut(s) 524
Sse9I AATT 4 cut(s) 91, 194, 665, 821
SstI GAGCTC 1 cut(s) 402
StyI CCWWGG 1 cut(s) 728
TaiI ACGT 1 cut(s) 765
TaqI TCGA 2 cut(s) 285, 414
TasI AATT 4 cut(s) 91, 194, 665, 821
TatI WGTACW 3 cut(s) 639, 693, 757
TseI GCWGC 2 cut(s) 17, 125
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 806
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 499
ZrmI AGTACT 2 cut(s) 641, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.