Rh5BG113100
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011360
Physical Location & Seq
Forward (+)
10606648 .. 10607586
939 bp
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UTR
Exon/CDS
Intron
Rh5BG113100.1

Sequence Viewer

Length: 939 bp
ATGCCAGTAACAACAGCAGCTCTGCAGTATTCTCTATGCTTCTCTCCTCATAACCCATCATCATCATCATCATCTTCATCTTCTATTCCCTCCAATTTGCAGACCTCAAACACCACCACCCATTTGGCAGCAAAACCCCAAAGCATTCTCCAAAAGCACCCACTATACACCCCCACCCACACCAAACTCTCCCTCCAATTCAAAGAGAAAATCCTCTGCCTTGAAATCATGGGAGTTGATGCAGGCAAAGCACTCTCCCAAAACCCTAATCTCCACTCAGCAACTCTCGACTCAATCCAAGCCATAATCACCTTCCTTCAATCCAAAGGCATACAAGAGAAGGACTTGGCCAAGATCTTTGGGATGTGCCCCCATATCCTCACCTCCAACATCAAAACTGAGCTCACCCCAGTTTTCGACTTTCTCTCAGATTACCTCCAAGTCCCAGAACATAACTTCAGAAAGGTCATCAACAAATGCCCAAGATTGCTTGCTTCAAGTGTGAGTGACCAGCTCAAACCAGCTTTGTTTTATCTTCAGAGACTTGGGTTCAAGGACTTGCATGCCTTAGCTTACCATGACTCTGTGCTCTTGGTTTCAAGTGTGGAGAAGACCCTGATTCCCAAGTTAAATTTTTTGGTGGGTTTGGGAATTCCAAGAGATGAGGCTGTGGCGTTGGTGCTGAGGTGTCCAGCATTGCTCACTTTCAGTATTGAGAATAACTACAAGCCAAAGTATGAGTACTTCTCTGTGGATATGGGGTTGAAATTGGAGGATTTGAAGGAGTTTCCTCAGTACTTTGCGTTTAGTTTGGAGAAGAGGATAAAGCCAAGGCATATGGAGGTTGTGCAAAGTGGAGTACACGTGCCTTTGCCACTTATGCTCAAGAGCACGGATGAGGAGTTCAGGGAGTTGCTGAAGCAATTTGGGGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

312

Amino Acids

34.89

Weight (kDa)

8.67

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 71 - 185 1.6e-12 mTERF
mTERF PF02536 197 - 302 8.7e-26 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 2 cut(s) 631, 651
AcuI CTGAAG 3 cut(s) 442, 521, 938
AcvI CACGTG 1 cut(s) 865
AfaI GTAC 3 cut(s) 743, 797, 861
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 8 cut(s) 202, 224, 320, 498, 553, 600, 766, 781
AloI GAACNNNNNNTCC 2 cut(s) 887, 919
AluBI AGCT 5 cut(s) 20, 403, 514, 524, 572
AluI AGCT 5 cut(s) 20, 403, 514, 524, 572
Alw21I GWGCWC 3 cut(s) 405, 591, 893
Alw26I GTCTC 1 cut(s) 535
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 17, 128
ApoI RAATTY 2 cut(s) 631, 651
AsuHPI GGTGA 3 cut(s) 301, 373, 397
BaeGI GKGCMC 1 cut(s) 371
BalI TGGCCA 1 cut(s) 350
BanII GRGCYC 1 cut(s) 405
BarI GAAGNNNNNNTAC 2 cut(s) 728, 760
BbrPI CACGTG 1 cut(s) 865
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 3 cut(s) 405, 591, 893
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 2 cut(s) 29, 140
BccI CCATC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 535
BfmI CTRYAG 1 cut(s) 23
BglII AGATCT 1 cut(s) 354
BisI GCNGC 2 cut(s) 18, 129
BlsI GCNGC 2 cut(s) 19, 130
BmcAI AGTACT 2 cut(s) 743, 797
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 731, 763
Bpu10I CCTNAGC 2 cut(s) 568, 683
BpuEI CTTGAG 1 cut(s) 869
BsaAI YACGTR 1 cut(s) 865
BsaJI CCNNGG 1 cut(s) 830
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 849, 879
Bse1I ACTGG 2 cut(s) 5, 410
Bse3DI GCAATG 1 cut(s) 695
BseDI CCNNGG 1 cut(s) 830
BseGI GGATG 2 cut(s) 369, 901
BseMI GCAATG 1 cut(s) 695
BseMII CTCAG 5 cut(s) 291, 390, 441, 674, 806
BseNI ACTGG 2 cut(s) 5, 410
BseRI GAGGAG 2 cut(s) 36, 914
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 2 cut(s) 29, 140
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 3 cut(s) 405, 591, 893
BslFI GGGAC 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 4 cut(s) 371, 405, 591, 893
Bsp143I GATC 1 cut(s) 354
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 5 cut(s) 290, 391, 440, 675, 805
BspMAI CTGCAG 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 695
BsrI ACTGG 2 cut(s) 5, 410
BssECI CCNNGG 1 cut(s) 830
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 830
Bst6I CTCTTC 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 865
BstC8I GCNNGC 3 cut(s) 244, 492, 564
BstDEI CTNAG 6 cut(s) 277, 399, 427, 568, 683, 792
BstF5I GGATG 2 cut(s) 369, 901
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 248, 880
BstNSI RCATGY 1 cut(s) 566
BstSFI CTRYAG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 29, 140
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 369, 901
Cac8I GCNNGC 3 cut(s) 244, 492, 564
Csp6I GTAC 3 cut(s) 742, 796, 860
CviAII CATG 3 cut(s) 229, 563, 578
CviQI GTAC 3 cut(s) 742, 796, 860
DdeI CTNAG 6 cut(s) 277, 399, 427, 568, 683, 792
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 830
Eco24I GRGCYC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 3 cut(s) 442, 521, 938
Eco72I CACGTG 1 cut(s) 865
EcoICRI GAGCTC 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 830
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 830
FaeI CATG 3 cut(s) 232, 566, 581
FaqI GGGAC 1 cut(s) 428
FatI CATG 3 cut(s) 228, 562, 577
FauNDI CATATG 1 cut(s) 837
Fnu4HI GCNGC 2 cut(s) 18, 129
FokI GGATG 2 cut(s) 376, 908
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 2 cut(s) 18, 129
GluI GCNGC 2 cut(s) 18, 129
HaeIII GGCC 1 cut(s) 350
Hin1II CATG 3 cut(s) 232, 566, 581
HinfI GANTC 3 cut(s) 290, 581, 619
HphI GGTGA 3 cut(s) 301, 373, 397
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 3 cut(s) 430, 461, 540
Hpy188III TCNNGA 2 cut(s) 287, 886
Hpy8I GTNNAC 1 cut(s) 862
HpyAV CCTTC 4 cut(s) 322, 326, 334, 775
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 5 cut(s) 25, 100, 242, 562, 850
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 880
HpyF3I CTNAG 6 cut(s) 277, 399, 427, 568, 683, 792
HpySE526I ACGT 1 cut(s) 864
Hsp92II CATG 3 cut(s) 232, 566, 581
Kzo9I GATC 1 cut(s) 354
LpnPI CCDG 9 cut(s) 18, 228, 423, 459, 524, 534, 629, 705, 892
Lsp1109I GCAGC 2 cut(s) 29, 140
LweI GCATC 1 cut(s) 229
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 2 cut(s) 7, 506
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 5 cut(s) 66, 72, 527, 622, 829
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 4 cut(s) 371, 405, 591, 893
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 6 cut(s) 94, 197, 631, 651, 767, 923
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 2 cut(s) 284, 575
MmeI TCCRAC 1 cut(s) 411
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 1 cut(s) 629
Msp20I TGGCCA 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 248, 880
NdeI CATATG 1 cut(s) 837
NdeII GATC 1 cut(s) 354
NlaIII CATG 3 cut(s) 232, 566, 581
NmuCI GTSAC 1 cut(s) 506
NspI RCATGY 1 cut(s) 566
PaeI GCATGC 1 cut(s) 566
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 619
PkrI GCNGC 2 cut(s) 19, 130
PleI GAGTC 2 cut(s) 284, 575
PmaCI CACGTG 1 cut(s) 865
PmlI CACGTG 1 cut(s) 865
PpsI GAGTC 2 cut(s) 284, 575
Ppu21I YACGTR 1 cut(s) 865
Psp124BI GAGCTC 1 cut(s) 405
PspCI CACGTG 1 cut(s) 865
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 3 cut(s) 743, 797, 861
RsaNI GTAC 3 cut(s) 742, 796, 860
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 2 cut(s) 18, 129
Sau3AI GATC 1 cut(s) 354
ScaI AGTACT 2 cut(s) 743, 797
SchI GAGTC 2 cut(s) 284, 575
SduI GDGCHC 4 cut(s) 371, 405, 591, 893
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
SphI GCATGC 1 cut(s) 566
Sse9I AATT 6 cut(s) 94, 197, 631, 651, 767, 923
SstI GAGCTC 1 cut(s) 405
StyI CCWWGG 1 cut(s) 830
TaiI ACGT 1 cut(s) 867
TaqI TCGA 2 cut(s) 288, 417
TasI AATT 6 cut(s) 94, 197, 631, 651, 767, 923
TatI WGTACW 3 cut(s) 741, 795, 859
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 2 cut(s) 17, 128
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 908
XapI RAATTY 2 cut(s) 631, 651
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
ZrmI AGTACT 2 cut(s) 743, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.